| Literature DB >> 21577523 |
Abstract
The structure of the title compound, C(6)H(5)I(2)N, shows a weak inter-molecular amine-amine N-H⋯N hydrogen-bonding inter-action, giving a helical chain which extends along the a axis. An intra-molecular N-H⋯I hydrogen bond is also observed.Entities:
Year: 2009 PMID: 21577523 PMCID: PMC2970149 DOI: 10.1107/S1600536809030438
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H5I2N | |
| Melting point = 368–369 K | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 5620 reflections |
| θ = 3.0–32.2° | |
| µ = 7.62 mm−1 | |
| Needle, colourless | |
| 0.30 × 0.18 × 0.18 mm | |
| Oxford Diffraction Gemini-S Ultra CCD-detector diffractometer | 1873 independent reflections |
| Radiation source: Enhance (Mo) X-ray tube | 1790 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 6739 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.003 | |
| 1873 reflections | Δρmax = 0.38 e Å−3 |
| 90 parameters | Δρmin = −0.47 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 737 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.03 (4) |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| I2 | 0.57888 (5) | 0.42657 (2) | 1.08868 (1) | 0.0293 (1) | |
| I4 | 0.48489 (5) | 0.28546 (2) | 0.75021 (1) | 0.0330 (1) | |
| N1 | 0.1721 (9) | 0.6552 (3) | 1.0212 (2) | 0.0291 (11) | |
| C1 | 0.2299 (7) | 0.5690 (3) | 0.9630 (2) | 0.0218 (9) | |
| C2 | 0.4096 (8) | 0.4658 (3) | 0.97570 (19) | 0.0221 (9) | |
| C3 | 0.4807 (8) | 0.3859 (3) | 0.9156 (2) | 0.0247 (9) | |
| C4 | 0.3689 (8) | 0.4074 (3) | 0.8407 (2) | 0.0235 (10) | |
| C5 | 0.1876 (8) | 0.5075 (3) | 0.8256 (2) | 0.0260 (11) | |
| C6 | 0.1216 (9) | 0.5877 (3) | 0.8865 (2) | 0.0278 (11) | |
| H3 | 0.60280 | 0.31820 | 0.92530 | 0.0300* | |
| H5 | 0.11070 | 0.52100 | 0.77530 | 0.0310* | |
| H6 | 0.00190 | 0.65580 | 0.87610 | 0.0330* | |
| H11 | 0.190 (8) | 0.626 (3) | 1.062 (2) | 0.038 (9)* | |
| H12 | 0.043 (8) | 0.704 (4) | 1.010 (2) | 0.040 (9)* |
| I2 | 0.0335 (1) | 0.0341 (1) | 0.0202 (1) | 0.0009 (1) | −0.0038 (1) | 0.0021 (1) |
| I4 | 0.0383 (1) | 0.0389 (1) | 0.0219 (1) | 0.0022 (1) | 0.0017 (1) | −0.0069 (1) |
| N1 | 0.037 (2) | 0.0222 (16) | 0.028 (2) | 0.0055 (15) | −0.0021 (16) | 0.0013 (15) |
| C1 | 0.0214 (15) | 0.0191 (16) | 0.0248 (18) | −0.0039 (15) | 0.0014 (14) | 0.0021 (14) |
| C2 | 0.0251 (16) | 0.0226 (16) | 0.0186 (17) | −0.0034 (15) | −0.0009 (14) | 0.0032 (11) |
| C3 | 0.0289 (18) | 0.0218 (14) | 0.0234 (17) | −0.0007 (11) | −0.0010 (16) | 0.0015 (12) |
| C4 | 0.0252 (17) | 0.0226 (18) | 0.0228 (18) | −0.0031 (13) | 0.0028 (14) | −0.0029 (13) |
| C5 | 0.027 (2) | 0.0313 (19) | 0.0197 (19) | −0.0028 (14) | −0.0018 (15) | 0.0044 (14) |
| C6 | 0.0323 (19) | 0.0236 (18) | 0.0276 (19) | 0.0028 (15) | 0.0007 (15) | 0.0051 (13) |
| I2—C2 | 2.101 (3) | C2—C3 | 1.381 (5) |
| I4—C4 | 2.099 (3) | C3—C4 | 1.383 (5) |
| N1—C1 | 1.391 (5) | C4—C5 | 1.379 (5) |
| N1—H12 | 0.80 (4) | C5—C6 | 1.388 (5) |
| N1—H11 | 0.77 (3) | C3—H3 | 0.9300 |
| C1—C6 | 1.398 (5) | C5—H5 | 0.9300 |
| C1—C2 | 1.396 (5) | C6—H6 | 0.9300 |
| H11—N1—H12 | 124 (4) | I4—C4—C3 | 118.6 (2) |
| C1—N1—H11 | 110 (3) | C3—C4—C5 | 120.7 (3) |
| C1—N1—H12 | 114 (3) | C4—C5—C6 | 119.1 (3) |
| N1—C1—C6 | 119.9 (3) | C1—C6—C5 | 121.9 (3) |
| N1—C1—C2 | 123.0 (3) | C2—C3—H3 | 120.00 |
| C2—C1—C6 | 117.0 (3) | C4—C3—H3 | 120.00 |
| I2—C2—C1 | 120.4 (2) | C4—C5—H5 | 120.00 |
| I2—C2—C3 | 117.7 (2) | C6—C5—H5 | 121.00 |
| C1—C2—C3 | 121.9 (3) | C1—C6—H6 | 119.00 |
| C2—C3—C4 | 119.4 (3) | C5—C6—H6 | 119.00 |
| I4—C4—C5 | 120.7 (2) | ||
| N1—C1—C2—I2 | 5.0 (5) | C1—C2—C3—C4 | −0.7 (5) |
| N1—C1—C2—C3 | −175.5 (3) | C2—C3—C4—I4 | 179.3 (3) |
| C6—C1—C2—I2 | −178.9 (2) | C2—C3—C4—C5 | 0.0 (5) |
| C6—C1—C2—C3 | 0.6 (5) | I4—C4—C5—C6 | −178.5 (3) |
| N1—C1—C6—C5 | 176.5 (3) | C3—C4—C5—C6 | 0.9 (5) |
| C2—C1—C6—C5 | 0.3 (5) | C4—C5—C6—C1 | −1.0 (5) |
| I2—C2—C3—C4 | 178.8 (3) |
| H··· | ||||
| N1—H11···I2 | 0.77 (3) | 2.81 (3) | 3.283 (4) | 122 (3) |
| N1—H12···N1i | 0.80 (4) | 2.30 (4) | 3.106 (5) | 180 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H11⋯I2 | 0.77 (3) | 2.81 (3) | 3.283 (4) | 122 (3) |
| N1—H12⋯N1i | 0.80 (4) | 2.30 (4) | 3.106 (5) | 180 (5) |
Symmetry code: (i) .