Literature DB >> 21577516

Ethyl 2-(2,6-difluoro-benz-yloxy)-4-(4,6-dimethoxy-pyrimidin-2-yl)quinoline-3-carboxyl-ate.

Yuan-Xiang Li1.   

Abstract

In the title compound, C(25)H(21)F(2)N(3)O(5), the pyrimidine and difluoro-benz-yloxy rings are twisted away from the central quinoline ring system, making dihedral angles of 54.6 (1) and 74.1 (1)°, respectively. A weak C-H⋯O inter-action links symmetry-related mol-ecules, forming a pseudo-dimer. π-π inter-actions between the quinoline rings of symmetry-related mol-ecules [centroid-centroid distance = 3.5479 (10) Å] link these dimers into chains parallel to [101]. Weak C-H⋯π inter-actions join adjacent chains, forming a two-dimensional layer parallel to (101).

Entities:  

Year:  2009        PMID: 21577516      PMCID: PMC2970014          DOI: 10.1107/S1600536809030499

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Pyrimidinylbenzoates are highly effective herbicides with acetohydr­oxy acid synthase (AHAS) as target, see: Duggleby & Pang (2000 ▶). For related structures, see: Li & Huang (2007 ▶); Li & Wang (2007 ▶); Li et al. (2006 ▶).

Experimental

Crystal data

C25H21F2N3O5 M = 481.45 Triclinic, a = 9.6623 (6) Å b = 10.7044 (6) Å c = 11.3856 (7) Å α = 84.466 (1)° β = 82.251 (2)° γ = 81.394 (1)° V = 1150.21 (12) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 297 K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.959, T max = 0.989 12431 measured reflections 4954 independent reflections 3541 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.170 S = 1.06 4954 reflections 319 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809030499/dn2477sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030499/dn2477Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H21F2N3O5Z = 2
Mr = 481.45F(000) = 500
Triclinic, P1Dx = 1.390 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.6623 (6) ÅCell parameters from 4454 reflections
b = 10.7044 (6) Åθ = 2.5–27.9°
c = 11.3856 (7) ŵ = 0.11 mm1
α = 84.466 (1)°T = 297 K
β = 82.251 (2)°Block, colourless
γ = 81.394 (1)°0.20 × 0.20 × 0.10 mm
V = 1150.21 (12) Å3
Bruker SMART APEX CCD area-detector diffractometer4954 independent reflections
Radiation source: fine focus sealed Siemens Mo tube3541 reflections with I > 2σ(I)
graphiteRint = 0.035
0.3° wide ω exposures scansθmax = 27.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −12→12
Tmin = 0.959, Tmax = 0.989k = −13→13
12431 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.170H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.1077P)2 + 0.004P] where P = (Fo2 + 2Fc2)/3
4954 reflections(Δ/σ)max < 0.001
319 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.11250 (16)1.02922 (15)0.13717 (14)0.0399 (4)
C2−0.20285 (19)1.12507 (18)0.08156 (17)0.0518 (4)
H2−0.19631.20960.08920.062*
C3−0.3002 (2)1.09504 (19)0.01640 (17)0.0559 (5)
H3−0.35961.1593−0.02000.067*
C4−0.31136 (19)0.96834 (19)0.00409 (17)0.0535 (5)
H4−0.37720.9490−0.04140.064*
C5−0.22682 (18)0.87332 (17)0.05793 (15)0.0467 (4)
H5−0.23580.78940.04960.056*
C6−0.12486 (16)0.90099 (15)0.12685 (13)0.0382 (4)
C7−0.02903 (16)0.80657 (15)0.18258 (14)0.0379 (4)
C80.07269 (16)0.84312 (14)0.23904 (14)0.0378 (4)
C90.07460 (16)0.97547 (15)0.24412 (14)0.0397 (4)
C10−0.03328 (16)0.66870 (15)0.17606 (13)0.0378 (4)
C11−0.15329 (17)0.50141 (15)0.20841 (15)0.0439 (4)
C12−0.03457 (18)0.42061 (16)0.17093 (16)0.0474 (4)
H12−0.03490.33390.17000.057*
C130.08520 (18)0.47704 (15)0.13469 (15)0.0428 (4)
C14−0.3984 (2)0.5352 (2)0.2799 (2)0.0682 (6)
H14A−0.38290.57970.34520.102*
H14B−0.47530.48740.30410.102*
H14C−0.42070.59510.21450.102*
C150.3280 (2)0.4621 (2)0.0603 (2)0.0650 (5)
H15A0.31160.5246−0.00440.097*
H15B0.40550.39930.03540.097*
H15C0.35010.50210.12610.097*
C160.17828 (19)0.75111 (15)0.29953 (15)0.0439 (4)
C170.1993 (3)0.5997 (2)0.4653 (2)0.0774 (7)
H17A0.16140.60360.54840.093*
H17B0.29410.62200.45590.093*
C180.2047 (3)0.4705 (2)0.4309 (2)0.0838 (7)
H18A0.11050.45070.43430.126*
H18B0.25550.41190.48450.126*
H18C0.25160.46430.35140.126*
C190.17799 (19)1.13573 (16)0.31615 (18)0.0514 (5)
H19A0.08871.17280.35670.062*
H19B0.19331.18070.23840.062*
C200.29534 (18)1.14504 (15)0.38676 (16)0.0445 (4)
C210.2822 (2)1.12069 (18)0.50781 (18)0.0598 (5)
C220.3845 (3)1.1322 (2)0.5770 (2)0.0815 (8)
H220.37011.11500.65900.098*
C230.5084 (3)1.1696 (2)0.5223 (3)0.0841 (8)
H230.57921.17810.56760.101*
C240.5287 (2)1.1944 (2)0.4020 (3)0.0767 (7)
H240.61291.21950.36480.092*
C250.4223 (2)1.18172 (18)0.33639 (19)0.0555 (5)
F10.16058 (16)1.08091 (16)0.55995 (13)0.0978 (5)
F20.44154 (15)1.20738 (14)0.21759 (13)0.0900 (5)
N1−0.01274 (14)1.06487 (12)0.19857 (12)0.0431 (3)
N20.08787 (14)0.60077 (13)0.13662 (12)0.0415 (3)
N3−0.15616 (14)0.62592 (13)0.21236 (12)0.0435 (3)
O1−0.27320 (13)0.45076 (12)0.24386 (13)0.0572 (4)
O20.20379 (13)0.40262 (12)0.09621 (12)0.0580 (4)
O30.30275 (14)0.73618 (13)0.27045 (13)0.0606 (4)
O40.11257 (15)0.68999 (12)0.39364 (12)0.0596 (4)
O50.17624 (12)1.00344 (10)0.30413 (11)0.0485 (3)
U11U22U33U12U13U23
C10.0371 (8)0.0391 (9)0.0455 (9)−0.0126 (7)−0.0069 (7)0.0001 (7)
C20.0490 (10)0.0417 (9)0.0676 (12)−0.0110 (8)−0.0175 (9)0.0032 (8)
C30.0509 (11)0.0558 (11)0.0623 (11)−0.0051 (9)−0.0198 (9)0.0044 (9)
C40.0453 (10)0.0634 (12)0.0571 (11)−0.0112 (9)−0.0203 (8)−0.0056 (9)
C50.0449 (9)0.0472 (10)0.0533 (10)−0.0138 (7)−0.0150 (7)−0.0063 (7)
C60.0352 (8)0.0413 (9)0.0410 (8)−0.0122 (7)−0.0073 (6)−0.0027 (6)
C70.0390 (8)0.0360 (8)0.0419 (8)−0.0137 (6)−0.0069 (6)−0.0029 (6)
C80.0378 (8)0.0329 (8)0.0464 (9)−0.0124 (6)−0.0108 (7)−0.0022 (6)
C90.0385 (8)0.0357 (8)0.0495 (9)−0.0154 (7)−0.0119 (7)−0.0020 (7)
C100.0402 (8)0.0360 (8)0.0422 (8)−0.0126 (6)−0.0144 (6)−0.0041 (6)
C110.0468 (10)0.0412 (9)0.0512 (9)−0.0201 (7)−0.0213 (7)0.0019 (7)
C120.0550 (10)0.0336 (8)0.0616 (11)−0.0168 (8)−0.0227 (8)−0.0049 (7)
C130.0476 (9)0.0376 (9)0.0492 (9)−0.0106 (7)−0.0182 (7)−0.0085 (7)
C140.0474 (11)0.0685 (14)0.0941 (16)−0.0252 (10)−0.0097 (10)−0.0055 (11)
C150.0515 (11)0.0654 (13)0.0776 (14)−0.0086 (10)−0.0020 (10)−0.0108 (11)
C160.0513 (10)0.0331 (8)0.0542 (10)−0.0139 (7)−0.0213 (8)−0.0048 (7)
C170.1054 (18)0.0602 (13)0.0727 (14)−0.0146 (12)−0.0449 (13)0.0172 (11)
C180.1047 (19)0.0519 (13)0.1008 (18)−0.0081 (12)−0.0420 (15)0.0019 (12)
C190.0514 (10)0.0326 (9)0.0774 (12)−0.0126 (7)−0.0247 (9)−0.0068 (8)
C200.0461 (9)0.0311 (8)0.0616 (11)−0.0103 (7)−0.0155 (8)−0.0101 (7)
C210.0686 (13)0.0479 (11)0.0653 (12)−0.0085 (9)−0.0097 (10)−0.0141 (9)
C220.120 (2)0.0638 (14)0.0692 (14)−0.0051 (14)−0.0414 (14)−0.0200 (11)
C230.1000 (19)0.0523 (13)0.119 (2)−0.0128 (13)−0.0703 (17)−0.0179 (13)
C240.0579 (13)0.0531 (12)0.131 (2)−0.0246 (10)−0.0378 (13)−0.0045 (13)
C250.0548 (11)0.0440 (10)0.0733 (13)−0.0174 (8)−0.0191 (9)−0.0007 (9)
F10.0910 (10)0.1135 (12)0.0842 (10)−0.0252 (9)0.0183 (8)−0.0065 (8)
F20.0820 (9)0.1069 (12)0.0810 (9)−0.0321 (8)−0.0064 (7)0.0174 (8)
N10.0414 (7)0.0344 (7)0.0575 (9)−0.0139 (6)−0.0137 (6)0.0002 (6)
N20.0443 (8)0.0374 (7)0.0475 (8)−0.0127 (6)−0.0122 (6)−0.0066 (6)
N30.0433 (8)0.0389 (8)0.0539 (8)−0.0171 (6)−0.0131 (6)−0.0040 (6)
O10.0496 (7)0.0471 (7)0.0822 (9)−0.0258 (6)−0.0164 (6)−0.0001 (6)
O20.0518 (8)0.0441 (7)0.0809 (9)−0.0077 (6)−0.0085 (6)−0.0169 (6)
O30.0431 (7)0.0551 (8)0.0882 (10)−0.0084 (6)−0.0251 (6)−0.0016 (7)
O40.0696 (9)0.0501 (8)0.0614 (8)−0.0137 (6)−0.0221 (7)0.0121 (6)
O50.0503 (7)0.0322 (6)0.0715 (8)−0.0135 (5)−0.0286 (6)−0.0050 (5)
C1—N11.381 (2)C14—H14C0.9600
C1—C21.404 (2)C15—O21.435 (2)
C1—C61.413 (2)C15—H15A0.9600
C2—C31.365 (2)C15—H15B0.9600
C2—H20.9300C15—H15C0.9600
C3—C41.398 (3)C16—O31.194 (2)
C3—H30.9300C16—O41.336 (2)
C4—C51.358 (3)C17—O41.446 (2)
C4—H40.9300C17—C181.465 (3)
C5—C61.419 (2)C17—H17A0.9700
C5—H50.9300C17—H17B0.9700
C6—C71.427 (2)C18—H18A0.9600
C7—C81.366 (2)C18—H18B0.9600
C7—C101.492 (2)C18—H18C0.9600
C8—C91.426 (2)C19—O51.4386 (18)
C8—C161.498 (2)C19—C201.496 (2)
C9—N11.295 (2)C19—H19A0.9700
C9—O51.3525 (18)C19—H19B0.9700
C10—N21.329 (2)C20—C211.370 (3)
C10—N31.336 (2)C20—C251.378 (3)
C11—N31.334 (2)C21—F11.352 (2)
C11—O11.3487 (19)C21—C221.370 (3)
C11—C121.374 (2)C22—C231.370 (4)
C12—C131.381 (2)C22—H220.9300
C12—H120.9300C23—C241.363 (4)
C13—N21.331 (2)C23—H230.9300
C13—O21.341 (2)C24—C251.380 (3)
C14—O11.435 (2)C24—H240.9300
C14—H14A0.9600C25—F21.347 (2)
C14—H14B0.9600
N1—C1—C2118.10 (14)H15A—C15—H15C109.5
N1—C1—C6122.54 (14)H15B—C15—H15C109.5
C2—C1—C6119.36 (14)O3—C16—O4124.76 (16)
C3—C2—C1120.49 (17)O3—C16—C8125.61 (16)
C3—C2—H2119.8O4—C16—C8109.61 (15)
C1—C2—H2119.8O4—C17—C18111.28 (18)
C2—C3—C4120.44 (17)O4—C17—H17A109.4
C2—C3—H3119.8C18—C17—H17A109.4
C4—C3—H3119.8O4—C17—H17B109.4
C5—C4—C3120.58 (16)C18—C17—H17B109.4
C5—C4—H4119.7H17A—C17—H17B108.0
C3—C4—H4119.7C17—C18—H18A109.5
C4—C5—C6120.53 (16)C17—C18—H18B109.5
C4—C5—H5119.7H18A—C18—H18B109.5
C6—C5—H5119.7C17—C18—H18C109.5
C1—C6—C5118.59 (14)H18A—C18—H18C109.5
C1—C6—C7117.55 (13)H18B—C18—H18C109.5
C5—C6—C7123.81 (14)O5—C19—C20107.44 (13)
C8—C7—C6119.30 (14)O5—C19—H19A110.2
C8—C7—C10119.15 (14)C20—C19—H19A110.2
C6—C7—C10121.50 (13)O5—C19—H19B110.2
C7—C8—C9118.12 (14)C20—C19—H19B110.2
C7—C8—C16123.18 (14)H19A—C19—H19B108.5
C9—C8—C16118.67 (13)C21—C20—C25115.06 (17)
N1—C9—O5120.62 (13)C21—C20—C19121.87 (17)
N1—C9—C8125.03 (14)C25—C20—C19123.05 (17)
O5—C9—C8114.34 (13)F1—C21—C20116.70 (18)
N2—C10—N3126.87 (14)F1—C21—C22119.1 (2)
N2—C10—C7115.84 (14)C20—C21—C22124.1 (2)
N3—C10—C7117.27 (14)C23—C22—C21118.3 (2)
N3—C11—O1118.56 (15)C23—C22—H22120.8
N3—C11—C12123.87 (15)C21—C22—H22120.8
O1—C11—C12117.57 (15)C24—C23—C22120.5 (2)
C11—C12—C13115.41 (15)C24—C23—H23119.8
C11—C12—H12122.3C22—C23—H23119.8
C13—C12—H12122.3C23—C24—C25118.9 (2)
N2—C13—O2119.06 (15)C23—C24—H24120.5
N2—C13—C12123.08 (16)C25—C24—H24120.5
O2—C13—C12117.86 (15)F2—C25—C20117.91 (16)
O1—C14—H14A109.5F2—C25—C24119.04 (19)
O1—C14—H14B109.5C20—C25—C24123.0 (2)
H14A—C14—H14B109.5C9—N1—C1117.38 (13)
O1—C14—H14C109.5C10—N2—C13115.82 (14)
H14A—C14—H14C109.5C11—N3—C10114.94 (14)
H14B—C14—H14C109.5C11—O1—C14117.78 (14)
O2—C15—H15A109.5C13—O2—C15117.34 (14)
O2—C15—H15B109.5C16—O4—C17117.21 (17)
H15A—C15—H15B109.5C9—O5—C19116.23 (12)
O2—C15—H15C109.5
N1—C1—C2—C3177.81 (17)C25—C20—C21—F1−178.15 (16)
C6—C1—C2—C3−1.1 (3)C19—C20—C21—F13.6 (3)
C1—C2—C3—C40.0 (3)C25—C20—C21—C220.7 (3)
C2—C3—C4—C50.8 (3)C19—C20—C21—C22−177.59 (18)
C3—C4—C5—C6−0.5 (3)F1—C21—C22—C23178.40 (19)
N1—C1—C6—C5−177.47 (15)C20—C21—C22—C23−0.4 (3)
C2—C1—C6—C51.4 (2)C21—C22—C23—C24−0.1 (3)
N1—C1—C6—C7−0.2 (2)C22—C23—C24—C250.2 (4)
C2—C1—C6—C7178.70 (15)C21—C20—C25—F2−179.82 (17)
C4—C5—C6—C1−0.6 (3)C19—C20—C25—F2−1.5 (3)
C4—C5—C6—C7−177.72 (16)C21—C20—C25—C24−0.5 (3)
C1—C6—C7—C8−2.4 (2)C19—C20—C25—C24177.74 (17)
C5—C6—C7—C8174.76 (15)C23—C24—C25—F2179.4 (2)
C1—C6—C7—C10−179.66 (14)C23—C24—C25—C200.1 (3)
C5—C6—C7—C10−2.5 (2)O5—C9—N1—C1179.15 (14)
C6—C7—C8—C92.7 (2)C8—C9—N1—C1−2.2 (2)
C10—C7—C8—C9180.00 (14)C2—C1—N1—C9−176.48 (15)
C6—C7—C8—C16−179.72 (15)C6—C1—N1—C92.4 (2)
C10—C7—C8—C16−2.4 (2)N3—C10—N2—C13−0.7 (2)
C7—C8—C9—N1−0.4 (2)C7—C10—N2—C13177.77 (13)
C16—C8—C9—N1−178.08 (16)O2—C13—N2—C10−179.84 (14)
C7—C8—C9—O5178.39 (14)C12—C13—N2—C100.0 (2)
C16—C8—C9—O50.7 (2)O1—C11—N3—C10179.87 (14)
C8—C7—C10—N2−50.7 (2)C12—C11—N3—C100.3 (2)
C6—C7—C10—N2126.58 (16)N2—C10—N3—C110.5 (2)
C8—C7—C10—N3127.95 (16)C7—C10—N3—C11−177.91 (13)
C6—C7—C10—N3−54.8 (2)N3—C11—O1—C142.2 (2)
N3—C11—C12—C13−0.9 (2)C12—C11—O1—C14−178.28 (16)
O1—C11—C12—C13179.53 (14)N2—C13—O2—C150.7 (2)
C11—C12—C13—N20.8 (2)C12—C13—O2—C15−179.17 (16)
C11—C12—C13—O2−179.41 (15)O3—C16—O4—C170.2 (3)
C7—C8—C16—O3115.1 (2)C8—C16—O4—C17−178.10 (15)
C9—C8—C16—O3−67.3 (2)C18—C17—O4—C16−96.3 (2)
C7—C8—C16—O4−66.5 (2)N1—C9—O5—C191.6 (2)
C9—C8—C16—O4111.05 (16)C8—C9—O5—C19−177.26 (14)
O5—C19—C20—C21−77.8 (2)C20—C19—O5—C9178.85 (14)
O5—C19—C20—C25104.00 (19)
D—H···AD—HH···AD···AD—H···A
C5—H5···N30.932.543.075 (2)117
C23—H23···O3i0.932.603.476 (2)158
C18—H18B···Cg3ii0.962.913.612 (2)131
Cg(I)–Cg(J)Cg–Cgα(CgI–CgJ)Perp(CgJ–CgI)PerpSlippage
Cg1–Cg2iii3.5479 (10)3.273.4823.4830.676
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C23—H23⋯O3i0.932.603.476 (2)158
C18—H18BCg3ii0.962.913.612 (2)131

Symmetry codes: (i) ; (ii) .

Table 2

Table 2. π-π stacking in the title compound (Å, °)

CgICgJCgCgα(CgCg)Perp(CgJCgI)PerpSlippage 
Cg1–Cg2iii3.5479 (10)3.273.4823.4830.676 

Cg1 and Cg2 are the centroids of the N1,C1,C6–C9 and C1–C6 rings, respectively, and α is the angle between the corresponding planes. Symmetry code: (iii)

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