Literature DB >> 21577498

4-[(4-Fluoro-benzyl-idene)amino]-3-[1-(4-isobutyl-phen-yl)eth-yl]-1H-1,2,4-triazole-5(4H)-thione.

Hoong-Kun Fun, Wan-Sin Loh, A C Vinayaka, B Kalluraya.   

Abstract

In the title compound, C(21)H(23)FN(4)S, the benzene rings of the isobutyl-phenyl and fluoro-benzene units form dihedral angles of 75.89 (7) and 13.26 (7)°, respectively, with the triazole ring. An intra-molecular C-H⋯S hydrogen-bonding contact generates an S(6) ring motif. In the crystal packing, pairs of N-H⋯S hydrogen bonds link neighbouring mol-ecules into inversion dimers, forming R(2) (2)(8) ring motifs. The crystal structure is further stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21577498      PMCID: PMC2969932          DOI: 10.1107/S160053680903030X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological activity of triazoles, see: Göknur et al. (2005 ▶). For the anti-tumor activity of triazole derivatives, see: Demirbas et al. (2002 ▶, 2004 ▶). For the synthesis of related heterocyclic compounds, see: Fun et al. (2008 ▶, 2009a ▶). For a related structure, see: Fun et al. (2009b ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H23FN4S M = 382.49 Triclinic, a = 5.7883 (1) Å b = 9.9001 (1) Å c = 18.4972 (3) Å α = 98.132 (1)° β = 97.087 (1)° γ = 105.997 (1)° V = 993.90 (3) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 100 K 0.46 × 0.20 × 0.07 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.919, T max = 0.987 31031 measured reflections 7460 independent reflections 5798 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.135 S = 1.06 7460 reflections 336 parameters All H-atom parameters refined Δρmax = 0.63 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680903030X/tk2518sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903030X/tk2518Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H23FN4SZ = 2
Mr = 382.49F(000) = 404
Triclinic, P1Dx = 1.278 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7883 (1) ÅCell parameters from 8265 reflections
b = 9.9001 (1) Åθ = 2.3–32.9°
c = 18.4972 (3) ŵ = 0.19 mm1
α = 98.132 (1)°T = 100 K
β = 97.087 (1)°Plate, colourless
γ = 105.997 (1)°0.46 × 0.20 × 0.07 mm
V = 993.90 (3) Å3
Bruker SMART APEXII CCD area-detector diffractometer7460 independent reflections
Radiation source: fine-focus sealed tube5798 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 33.1°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.919, Tmax = 0.987k = −13→15
31031 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135All H-atom parameters refined
S = 1.06w = 1/[σ2(Fo2) + (0.0657P)2 + 0.2752P] where P = (Fo2 + 2Fc2)/3
7460 reflections(Δ/σ)max = 0.001
336 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.29 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.23157 (6)0.40057 (3)0.062645 (17)0.02273 (9)
F11.07698 (17)0.46076 (11)0.34727 (5)0.0384 (2)
N20.09265 (19)0.67553 (11)0.11123 (6)0.0200 (2)
N3−0.2432 (2)0.66569 (12)0.04603 (6)0.0240 (2)
N4−0.1117 (2)0.80841 (12)0.06196 (6)0.0262 (2)
C10.7243 (2)0.63478 (14)0.23907 (7)0.0230 (2)
C20.9179 (2)0.61374 (15)0.28295 (8)0.0265 (3)
C30.8872 (3)0.48191 (16)0.30420 (8)0.0275 (3)
C40.6725 (3)0.37142 (15)0.28390 (8)0.0291 (3)
C50.4798 (3)0.39514 (15)0.24054 (8)0.0270 (3)
C60.5020 (2)0.52512 (13)0.21738 (7)0.0220 (2)
C70.2896 (2)0.54128 (14)0.17189 (7)0.0239 (2)
N10.29999 (19)0.65984 (12)0.15103 (6)0.0219 (2)
C8−0.1269 (2)0.57973 (13)0.07367 (6)0.0207 (2)
C90.0928 (2)0.81133 (13)0.10125 (7)0.0227 (2)
C100.3012 (3)0.94216 (14)0.13560 (7)0.0248 (3)
C110.2842 (2)0.98403 (13)0.21717 (7)0.0210 (2)
C120.4468 (2)0.96157 (14)0.27274 (7)0.0226 (2)
C130.4346 (2)1.00047 (13)0.34731 (7)0.0215 (2)
C140.2607 (2)1.06384 (13)0.36891 (7)0.0198 (2)
C150.0957 (2)1.08449 (14)0.31282 (7)0.0230 (2)
C160.1051 (2)1.04396 (14)0.23829 (7)0.0239 (2)
C170.2509 (2)1.11216 (14)0.44918 (7)0.0232 (2)
C180.3959 (2)1.26943 (14)0.48054 (7)0.0231 (2)
C190.3044 (3)1.06203 (16)0.09161 (9)0.0338 (3)
C200.6693 (3)1.29519 (17)0.48410 (9)0.0302 (3)
C210.3413 (3)1.31418 (18)0.55751 (8)0.0324 (3)
H1A0.739 (3)0.725 (2)0.2216 (10)0.031 (4)*
H2A1.074 (4)0.684 (2)0.2993 (11)0.042 (5)*
H4A0.661 (4)0.277 (2)0.3010 (11)0.042 (5)*
H5A0.325 (4)0.318 (2)0.2259 (11)0.038 (5)*
H7A0.142 (4)0.462 (2)0.1596 (11)0.037 (5)*
H10A0.470 (4)0.922 (2)0.1304 (11)0.035 (5)*
H12A0.570 (3)0.9154 (18)0.2584 (9)0.023 (4)*
H13A0.545 (3)0.985 (2)0.3849 (11)0.035 (5)*
H15A−0.026 (3)1.1270 (19)0.3265 (10)0.030 (4)*
H16A−0.007 (4)1.058 (2)0.2033 (11)0.040 (5)*
H17A0.314 (3)1.0534 (19)0.4791 (10)0.028 (4)*
H17B0.078 (3)1.0959 (18)0.4546 (9)0.024 (4)*
H18A0.347 (3)1.331 (2)0.4477 (11)0.035 (5)*
H19A0.140 (4)1.092 (2)0.0910 (11)0.044 (5)*
H19B0.452 (4)1.149 (2)0.1147 (12)0.047 (6)*
H19C0.323 (4)1.027 (2)0.0392 (11)0.040 (5)*
H20A0.761 (4)1.396 (2)0.5032 (12)0.047 (6)*
H20B0.714 (4)1.268 (2)0.4370 (12)0.041 (5)*
H20C0.723 (4)1.237 (2)0.5162 (12)0.043 (5)*
H21A0.164 (4)1.299 (2)0.5562 (12)0.048 (6)*
H21B0.421 (4)1.416 (2)0.5753 (12)0.042 (5)*
H21C0.394 (4)1.258 (2)0.5923 (11)0.036 (5)*
H1N3−0.384 (4)0.641 (2)0.0196 (11)0.038 (5)*
U11U22U33U12U13U23
S10.02380 (15)0.01846 (14)0.01925 (15)−0.00197 (10)0.00281 (11)−0.00094 (10)
F10.0338 (5)0.0443 (5)0.0371 (5)0.0151 (4)−0.0013 (4)0.0066 (4)
N20.0209 (5)0.0188 (5)0.0150 (4)−0.0010 (4)0.0017 (3)0.0006 (3)
N30.0234 (5)0.0201 (5)0.0210 (5)−0.0009 (4)−0.0016 (4)−0.0004 (4)
N40.0311 (6)0.0190 (5)0.0210 (5)−0.0011 (4)−0.0011 (4)0.0012 (4)
C10.0241 (6)0.0198 (5)0.0216 (6)0.0017 (4)0.0074 (4)−0.0004 (4)
C20.0224 (6)0.0273 (6)0.0250 (6)0.0024 (5)0.0057 (5)−0.0021 (5)
C30.0287 (6)0.0307 (7)0.0225 (6)0.0101 (5)0.0038 (5)0.0011 (5)
C40.0341 (7)0.0237 (6)0.0285 (7)0.0065 (5)0.0055 (5)0.0056 (5)
C50.0279 (6)0.0217 (6)0.0265 (6)0.0007 (5)0.0039 (5)0.0027 (5)
C60.0235 (6)0.0202 (5)0.0192 (5)0.0023 (4)0.0054 (4)0.0002 (4)
C70.0236 (6)0.0216 (6)0.0217 (6)−0.0002 (4)0.0041 (5)0.0017 (4)
N10.0207 (5)0.0236 (5)0.0171 (5)0.0009 (4)0.0028 (4)0.0015 (4)
C80.0211 (5)0.0209 (5)0.0143 (5)−0.0014 (4)0.0039 (4)−0.0006 (4)
C90.0273 (6)0.0192 (5)0.0159 (5)−0.0012 (4)0.0024 (4)0.0020 (4)
C100.0281 (6)0.0208 (6)0.0174 (5)−0.0035 (5)0.0018 (5)0.0013 (4)
C110.0227 (5)0.0161 (5)0.0178 (5)−0.0029 (4)0.0007 (4)0.0018 (4)
C120.0233 (6)0.0199 (5)0.0211 (6)0.0033 (4)0.0020 (4)0.0005 (4)
C130.0232 (6)0.0198 (5)0.0189 (5)0.0049 (4)−0.0007 (4)0.0024 (4)
C140.0198 (5)0.0175 (5)0.0182 (5)0.0004 (4)0.0015 (4)0.0020 (4)
C150.0183 (5)0.0237 (6)0.0246 (6)0.0038 (4)0.0007 (4)0.0036 (5)
C160.0209 (6)0.0245 (6)0.0215 (6)0.0016 (4)−0.0035 (4)0.0052 (5)
C170.0230 (6)0.0245 (6)0.0199 (6)0.0039 (5)0.0038 (4)0.0029 (5)
C180.0235 (6)0.0239 (6)0.0198 (6)0.0073 (4)0.0004 (4)0.0000 (4)
C190.0446 (9)0.0252 (7)0.0250 (7)−0.0006 (6)0.0034 (6)0.0071 (5)
C200.0236 (6)0.0323 (7)0.0277 (7)0.0019 (5)0.0037 (5)−0.0040 (6)
C210.0293 (7)0.0391 (8)0.0261 (7)0.0126 (6)0.0033 (5)−0.0062 (6)
S1—C81.6821 (13)C11—C121.3904 (18)
F1—C31.3577 (16)C11—C161.3976 (19)
N2—C91.3824 (16)C12—C131.3945 (18)
N2—N11.3870 (15)C12—H12A0.989 (16)
N2—C81.3888 (15)C13—C141.3935 (17)
N3—C81.3389 (17)C13—H13A0.941 (19)
N3—N41.3772 (15)C14—C151.3980 (17)
N3—H1N30.85 (2)C14—C171.5071 (17)
N4—C91.3011 (17)C15—C161.3923 (19)
C1—C21.382 (2)C15—H15A0.958 (18)
C1—C61.4055 (18)C16—H16A0.91 (2)
C1—H1A0.977 (18)C17—C181.5392 (19)
C2—C31.387 (2)C17—H17A0.968 (18)
C2—H2A0.96 (2)C17—H17B0.988 (17)
C3—C41.379 (2)C18—C201.524 (2)
C4—C51.385 (2)C18—C211.5272 (19)
C4—H4A1.01 (2)C18—H18A0.989 (19)
C5—C61.3908 (19)C19—H19A1.07 (2)
C5—H5A0.98 (2)C19—H19B1.03 (2)
C6—C71.4618 (19)C19—H19C1.01 (2)
C7—N11.2747 (17)C20—H20A0.98 (2)
C7—H7A0.97 (2)C20—H20B0.96 (2)
C9—C101.5013 (17)C20—H20C0.97 (2)
C10—C191.528 (2)C21—H21A0.99 (2)
C10—C111.5299 (18)C21—H21B0.97 (2)
C10—H10A1.059 (19)C21—H21C0.98 (2)
C9—N2—N1118.18 (10)C11—C12—H12A118.7 (10)
C9—N2—C8108.16 (11)C13—C12—H12A120.3 (10)
N1—N2—C8133.59 (11)C14—C13—C12121.45 (11)
C8—N3—N4114.43 (11)C14—C13—H13A117.7 (12)
C8—N3—H1N3127.2 (13)C12—C13—H13A120.9 (12)
N4—N3—H1N3118.4 (13)C13—C14—C15117.37 (11)
C9—N4—N3103.92 (11)C13—C14—C17122.28 (11)
C2—C1—C6120.41 (13)C15—C14—C17120.33 (11)
C2—C1—H1A121.3 (11)C16—C15—C14121.37 (12)
C6—C1—H1A118.2 (11)C16—C15—H15A120.0 (11)
C1—C2—C3118.32 (13)C14—C15—H15A118.7 (11)
C1—C2—H2A124.2 (12)C15—C16—C11120.84 (12)
C3—C2—H2A117.5 (12)C15—C16—H16A119.0 (13)
F1—C3—C4118.41 (13)C11—C16—H16A120.2 (13)
F1—C3—C2118.51 (13)C14—C17—C18114.35 (11)
C4—C3—C2123.08 (13)C14—C17—H17A109.5 (10)
C3—C4—C5117.71 (13)C18—C17—H17A107.9 (11)
C3—C4—H4A119.6 (12)C14—C17—H17B108.3 (10)
C5—C4—H4A122.6 (12)C18—C17—H17B109.7 (10)
C4—C5—C6121.40 (13)H17A—C17—H17B106.9 (14)
C4—C5—H5A119.0 (11)C20—C18—C21109.98 (11)
C6—C5—H5A119.6 (11)C20—C18—C17111.77 (11)
C5—C6—C1119.08 (13)C21—C18—C17110.13 (12)
C5—C6—C7117.86 (12)C20—C18—H18A107.0 (11)
C1—C6—C7123.06 (12)C21—C18—H18A108.4 (11)
N1—C7—C6119.92 (12)C17—C18—H18A109.4 (12)
N1—C7—H7A121.5 (11)C10—C19—H19A111.1 (11)
C6—C7—H7A118.5 (11)C10—C19—H19B109.4 (12)
C7—N1—N2119.06 (11)H19A—C19—H19B109.8 (16)
N3—C8—N2102.50 (10)C10—C19—H19C107.9 (11)
N3—C8—S1126.62 (10)H19A—C19—H19C109.8 (15)
N2—C8—S1130.88 (10)H19B—C19—H19C108.7 (17)
N4—C9—N2110.96 (11)C18—C20—H20A111.5 (12)
N4—C9—C10126.38 (12)C18—C20—H20B113.4 (12)
N2—C9—C10122.59 (12)H20A—C20—H20B108.1 (18)
C9—C10—C19110.48 (11)C18—C20—H20C109.1 (13)
C9—C10—C11108.88 (10)H20A—C20—H20C109.1 (17)
C19—C10—C11113.34 (11)H20B—C20—H20C105.5 (17)
C9—C10—H10A110.3 (11)C18—C21—H21A111.1 (13)
C19—C10—H10A103.0 (11)C18—C21—H21B110.1 (13)
C11—C10—H10A110.7 (11)H21A—C21—H21B106.5 (17)
C12—C11—C16117.98 (12)C18—C21—H21C110.7 (11)
C12—C11—C10120.42 (12)H21A—C21—H21C107.5 (17)
C16—C11—C10121.60 (11)H21B—C21—H21C110.9 (17)
C11—C12—C13120.95 (12)
C8—N3—N4—C9−0.39 (15)C8—N2—C9—N41.56 (14)
C6—C1—C2—C30.56 (19)N1—N2—C9—C10−3.85 (17)
C1—C2—C3—F1179.96 (12)C8—N2—C9—C10178.80 (11)
C1—C2—C3—C4−0.3 (2)N4—C9—C10—C19−26.92 (19)
F1—C3—C4—C5179.39 (12)N2—C9—C10—C19156.28 (13)
C2—C3—C4—C5−0.3 (2)N4—C9—C10—C1198.16 (15)
C3—C4—C5—C60.8 (2)N2—C9—C10—C11−78.64 (15)
C4—C5—C6—C1−0.5 (2)C9—C10—C11—C12107.13 (14)
C4—C5—C6—C7−179.87 (13)C19—C10—C11—C12−129.48 (14)
C2—C1—C6—C5−0.16 (19)C9—C10—C11—C16−72.11 (15)
C2—C1—C6—C7179.16 (12)C19—C10—C11—C1651.28 (17)
C5—C6—C7—N1178.23 (12)C16—C11—C12—C13−1.31 (18)
C1—C6—C7—N1−1.1 (2)C10—C11—C12—C13179.42 (11)
C6—C7—N1—N2−176.62 (11)C11—C12—C13—C14−0.41 (19)
C9—N2—N1—C7167.93 (12)C12—C13—C14—C151.20 (18)
C8—N2—N1—C7−15.5 (2)C12—C13—C14—C17−177.44 (12)
N4—N3—C8—N21.29 (14)C13—C14—C15—C16−0.28 (18)
N4—N3—C8—S1−178.22 (9)C17—C14—C15—C16178.39 (12)
C9—N2—C8—N3−1.65 (13)C14—C15—C16—C11−1.5 (2)
N1—N2—C8—N3−178.43 (12)C12—C11—C16—C152.23 (18)
C9—N2—C8—S1177.83 (10)C10—C11—C16—C15−178.51 (11)
N1—N2—C8—S11.1 (2)C13—C14—C17—C1892.42 (15)
N3—N4—C9—N2−0.73 (14)C15—C14—C17—C18−86.18 (14)
N3—N4—C9—C10−177.84 (12)C14—C17—C18—C20−66.53 (15)
N1—N2—C9—N4178.91 (11)C14—C17—C18—C21170.91 (11)
D—H···AD—HH···AD···AD—H···A
N3—H1N3···S1i0.85 (2)2.43 (2)3.2763 (12)172.3 (18)
C7—H7A···S10.96 (2)2.50 (2)3.2415 (13)133.2 (16)
C4—H4A···Cg1ii1.01 (2)2.85 (2)3.6276 (16)133.8 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1N3⋯S1i0.85 (2)2.43 (2)3.2763 (12)172.3 (18)
C7—H7A⋯S10.96 (2)2.50 (2)3.2415 (13)133.2 (16)
C4—H4ACg1ii1.01 (2)2.85 (2)3.6276 (16)133.8 (17)

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C11–C16 ring.

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Authors:  Göknur Aktay; Birsen Tozkoparan; Mevlüt Ertan
Journal:  Arch Pharm Res       Date:  2005-04       Impact factor: 4.946

4.  Synthesis and antimicrobial activities of some new 1-(5-phenylamino-[1,3,4]thiadiazol-2-yl)methyl-5-oxo-[1,2,4]triazole and 1-(4-phenyl-5-thioxo-[1,2,4]triazol-3-yl)methyl-5-oxo- [1,2,4]triazole derivatives.

Authors:  Neslihan Demirbas; Sengül Alpay Karaoglu; Ahmet Demirbas; Kemal Sancak
Journal:  Eur J Med Chem       Date:  2004-09       Impact factor: 6.514

5.  3-[1-(4-Isobutyl-phen-yl)eth-yl]-6-(4-methyl-phen-yl)-1,2,4-triazolo[3,4-b][1,3,4]thia-diazole.

Authors:  Hoong-Kun Fun; Samuel Robinson Jebas; Ibrahim Abdul Razak; K V Sujith; P S Patil; B Kalluraya; S M Dharmaprakash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-14

6.  4-{[(E)-(4-Chloro-phen-yl)methyl-idene]amino}-3-{2-[4-(2-methyl-prop-yl)phen-yl]eth-yl}-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Hoong-Kun Fun; Samuel Robinson Jebas; K V Sujith; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14

7.  4-[(E)-4-Methoxy-benzyl-ideneamino]-3-{1-[4-(2-methyl-prop-yl)phen-yl]eth-yl}-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Hoong-Kun Fun; Samuel Robinson Jebas; K V Sujith; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  (E)-4-(4-Hydr-oxy-3-methoxy-benzyl-idene-amino)-3-[1-(4-isobutyl-phen-yl)eth-yl]-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Jia Hao Goh; Hoong-Kun Fun; A C Vinayaka; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-09
  1 in total

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