Literature DB >> 21577497

N-(2-Hydroxy-ethyl)-2-[2-(hydroxy-imino)propanamido]ethanaminium 2-(hydroxy-imino)propanoate.

Turganbay S Iskenderov, Valentina A Kalibabchuk, Irina A Golenya, Nikolay M Dudarenko, Natalia I Usenko.   

Abstract

The cation of the title salt, C(7)H(16)N(3)O(3) (+)·C(3)H(4)NO(3) (-), the oxime group is trans with respect to the amide-carbonyl group. The components of the structure are united into a three-dimensional network by an extensive system of O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577497      PMCID: PMC2970128          DOI: 10.1107/S1600536809029778

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to oximes in coordination chemistry, see: Kukushkin et al. (1996 ▶); Chaudhuri (2003 ▶). For polynuclear species arising from bridging and/or functionalized oximes, see: Cervera et al. (1997 ▶); Costes et al. (1998 ▶); Moroz et al. (2008 ▶); Onindo et al. (1995 ▶); Sliva et al. (1997a ▶,b ▶); Gumienna-Kontecka et al. (2000 ▶). For oximes stabilizing high oxidation states, see: Kanderal et al. (2005 ▶); Fritsky et al. (2006 ▶). For related structures, see: Duda et al. (1997 ▶); Fritsky et al. (1999 ▶); Fritsky (1999 ▶); Mokhir et al. (2002 ▶). For the synthesis, see: Lau & Gutsche (1978 ▶).

Experimental

Crystal data

C7H16N3O3 +·C3H4NO3 M = 292.30 Monoclinic, a = 9.355 (2) Å b = 6.996 (1) Å c = 20.606 (4) Å β = 96.99 (3)° V = 1338.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 120 K 0.30 × 0.24 × 0.20 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (North et al., 1968 ▶) T min = 0.957, T max = 0.979 8410 measured reflections 3090 independent reflections 1887 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.088 S = 0.92 3090 reflections 201 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.25 e Å−3 Data collection: COLLECT (Bruker, 2004 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029778/tk2512sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029778/tk2512Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H16N3O3+·C3H4NO3F(000) = 624
Mr = 292.30Dx = 1.450 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1078 reflections
a = 9.355 (2) Åθ = 3.2–27.5°
b = 6.996 (1) ŵ = 0.12 mm1
c = 20.606 (4) ÅT = 120 K
β = 96.99 (3)°Block, colourless
V = 1338.6 (4) Å30.30 × 0.24 × 0.20 mm
Z = 4
Nonius KappaCCD diffractometer3090 independent reflections
Radiation source: fine-focus sealed tube1887 reflections with I > 2σ(I)
horizontally mounted graphite crystalRint = 0.049
Detector resolution: 9 pixels mm-1θmax = 28.4°, θmin = 3.1°
φ scans and ω scans with κ offseth = −12→9
Absorption correction: multi-scan (North et al., 1968)k = −8→9
Tmin = 0.957, Tmax = 0.979l = −23→26
8410 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 0.92w = 1/[σ2(Fo2) + (0.0375P)2] where P = (Fo2 + 2Fc2)/3
3090 reflections(Δ/σ)max = 0.002
201 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.84446 (13)−0.16641 (17)0.98706 (6)0.0158 (3)
O2−0.60613 (13)−0.22237 (19)1.00166 (6)0.0180 (3)
O3−0.84727 (14)−0.3817 (2)0.80265 (6)0.0181 (3)
H3O−0.939 (2)−0.373 (3)0.7840 (10)0.027*
O40.55821 (13)0.0801 (2)0.88257 (6)0.0193 (3)
H4O0.583 (2)0.126 (3)0.9258 (10)0.029*
O50.12037 (13)0.11505 (19)0.75400 (6)0.0179 (3)
O6−0.27505 (15)−0.2615 (2)1.00518 (6)0.0211 (3)
H6O−0.369 (2)−0.261 (3)0.9960 (9)0.032*
N1−0.85445 (16)−0.3060 (2)0.86557 (7)0.0146 (4)
N20.41206 (16)0.1204 (2)0.87427 (7)0.0153 (4)
N30.13295 (17)0.1750 (2)0.86292 (8)0.0139 (4)
H3N0.189 (2)0.184 (3)0.8990 (9)0.021*
N4−0.10824 (17)−0.0767 (2)0.90998 (7)0.0121 (4)
H4N−0.008 (2)−0.108 (3)0.9240 (9)0.018*
H5N−0.139 (2)−0.009 (3)0.9426 (9)0.018*
C1−0.7283 (2)−0.2267 (3)0.96857 (9)0.0139 (4)
C2−0.73259 (19)−0.3166 (3)0.90150 (9)0.0125 (4)
C3−0.59762 (19)−0.4002 (3)0.88233 (9)0.0162 (4)
H3A−0.6191−0.47040.84230.024*
H3C−0.5558−0.48460.91620.024*
H3B−0.5309−0.29950.87620.024*
C40.4116 (2)−0.0067 (3)0.76127 (9)0.0203 (5)
H4A0.5142−0.01620.77190.030*
H4B0.38990.07280.72340.030*
H4C0.3720−0.13190.75230.030*
C50.3476 (2)0.0790 (3)0.81755 (9)0.0124 (4)
C60.1903 (2)0.1255 (3)0.80944 (9)0.0142 (4)
C7−0.01883 (19)0.2223 (3)0.86077 (9)0.0160 (4)
H7A−0.04500.31200.82540.019*
H7B−0.03450.28470.90130.019*
C8−0.1158 (2)0.0483 (3)0.85087 (9)0.0143 (4)
H8A−0.21450.09030.83940.017*
H8B−0.0887−0.02600.81450.017*
C9−0.19929 (19)−0.2503 (3)0.89620 (8)0.0143 (4)
H9A−0.1580−0.32930.86460.017*
H9B−0.2948−0.21180.87700.017*
C10−0.2118 (2)−0.3664 (3)0.95673 (9)0.0171 (4)
H10A−0.2698−0.47890.94490.021*
H10B−0.1167−0.40910.97500.021*
U11U22U33U12U13U23
O10.0160 (7)0.0177 (8)0.0139 (7)0.0013 (6)0.0025 (5)−0.0025 (6)
O20.0156 (8)0.0239 (8)0.0132 (7)0.0003 (6)−0.0028 (6)−0.0031 (6)
O30.0161 (8)0.0264 (8)0.0114 (7)0.0014 (7)−0.0003 (6)−0.0043 (6)
O40.0112 (7)0.0286 (9)0.0177 (8)0.0035 (6)−0.0002 (6)−0.0047 (6)
O50.0154 (7)0.0250 (8)0.0127 (7)0.0001 (6)−0.0003 (6)0.0020 (6)
O60.0173 (8)0.0311 (9)0.0157 (7)−0.0033 (7)0.0057 (6)−0.0020 (6)
N10.0193 (9)0.0160 (9)0.0089 (8)−0.0016 (7)0.0030 (7)−0.0017 (7)
N20.0095 (8)0.0173 (9)0.0193 (9)0.0018 (7)0.0022 (7)0.0012 (7)
N30.0117 (9)0.0180 (10)0.0116 (9)−0.0007 (7)−0.0001 (6)−0.0003 (7)
N40.0113 (9)0.0159 (9)0.0094 (8)0.0011 (7)0.0027 (7)−0.0001 (7)
C10.0160 (11)0.0116 (11)0.0141 (10)−0.0007 (8)0.0017 (8)0.0028 (8)
C20.0135 (10)0.0101 (10)0.0139 (10)−0.0010 (8)0.0022 (8)0.0014 (8)
C30.0142 (10)0.0197 (11)0.0146 (10)0.0003 (9)0.0010 (8)−0.0018 (9)
C40.0164 (11)0.0276 (12)0.0167 (11)0.0011 (9)0.0015 (9)−0.0019 (9)
C50.0152 (10)0.0096 (10)0.0126 (10)−0.0005 (8)0.0024 (8)0.0009 (8)
C60.0191 (11)0.0097 (10)0.0138 (10)−0.0026 (8)0.0023 (9)0.0030 (8)
C70.0151 (11)0.0161 (11)0.0175 (11)0.0009 (9)0.0042 (8)0.0016 (8)
C80.0123 (10)0.0192 (12)0.0115 (10)0.0014 (9)0.0017 (8)0.0015 (8)
C90.0131 (10)0.0150 (11)0.0150 (10)−0.0019 (8)0.0022 (8)−0.0019 (8)
C100.0174 (11)0.0174 (11)0.0172 (10)0.0015 (9)0.0047 (8)0.0023 (9)
O1—C11.266 (2)C2—C31.488 (2)
O2—C11.258 (2)C3—H3A0.9600
O3—N11.4095 (18)C3—H3C0.9600
O3—H3O0.90 (2)C3—H3B0.9600
O4—N21.3861 (19)C4—C51.494 (2)
O4—H4O0.95 (2)C4—H4A0.9600
O5—C61.248 (2)C4—H4B0.9600
O6—C101.424 (2)C4—H4C0.9600
O6—H6O0.87 (2)C5—C61.497 (2)
N1—C21.284 (2)C7—C81.518 (2)
N2—C51.281 (2)C7—H7A0.9700
N3—C61.329 (2)C7—H7B0.9700
N3—C71.453 (2)C8—H8A0.9700
N3—H3N0.86 (2)C8—H8B0.9700
N4—C91.491 (2)C9—C101.505 (2)
N4—C81.494 (2)C9—H9A0.9700
N4—H4N0.970 (19)C9—H9B0.9700
N4—H5N0.895 (18)C10—H10A0.9700
C1—C21.515 (2)C10—H10B0.9700
N1—O3—H3O102.4 (12)H4B—C4—H4C109.5
N2—O4—H4O99.8 (12)N2—C5—C4127.62 (17)
C10—O6—H6O110.1 (13)N2—C5—C6113.55 (15)
C2—N1—O3111.74 (14)C4—C5—C6118.83 (16)
C5—N2—O4114.45 (14)O5—C6—N3123.72 (18)
C6—N3—C7121.71 (16)O5—C6—C5119.22 (16)
C6—N3—H3N118.4 (13)N3—C6—C5117.05 (16)
C7—N3—H3N119.8 (13)N3—C7—C8112.78 (15)
C9—N4—C8110.61 (14)N3—C7—H7A109.0
C9—N4—H4N112.3 (11)C8—C7—H7A109.0
C8—N4—H4N108.9 (11)N3—C7—H7B109.0
C9—N4—H5N110.3 (12)C8—C7—H7B109.0
C8—N4—H5N108.5 (12)H7A—C7—H7B107.8
H4N—N4—H5N106.1 (16)N4—C8—C7113.05 (15)
O2—C1—O1125.82 (17)N4—C8—H8A109.0
O2—C1—C2115.20 (16)C7—C8—H8A109.0
O1—C1—C2118.98 (17)N4—C8—H8B109.0
N1—C2—C3126.33 (17)C7—C8—H8B109.0
N1—C2—C1115.17 (16)H8A—C8—H8B107.8
C3—C2—C1118.46 (16)N4—C9—C10112.47 (15)
C2—C3—H3A109.5N4—C9—H9A109.1
C2—C3—H3C109.5C10—C9—H9A109.1
H3A—C3—H3C109.5N4—C9—H9B109.1
C2—C3—H3B109.5C10—C9—H9B109.1
H3A—C3—H3B109.5H9A—C9—H9B107.8
H3C—C3—H3B109.5O6—C10—C9112.58 (15)
C5—C4—H4A109.5O6—C10—H10A109.1
C5—C4—H4B109.5C9—C10—H10A109.1
H4A—C4—H4B109.5O6—C10—H10B109.1
C5—C4—H4C109.5C9—C10—H10B109.1
H4A—C4—H4C109.5H10A—C10—H10B107.8
O3—N1—C2—C3−1.2 (3)N2—C5—C6—O5170.68 (17)
O3—N1—C2—C1176.22 (14)C4—C5—C6—O5−9.1 (3)
O2—C1—C2—N1−174.16 (17)N2—C5—C6—N3−9.8 (2)
O1—C1—C2—N17.0 (2)C4—C5—C6—N3170.42 (17)
O2—C1—C2—C33.4 (2)C6—N3—C7—C873.0 (2)
O1—C1—C2—C3−175.41 (17)C9—N4—C8—C7−176.88 (15)
O4—N2—C5—C40.4 (3)N3—C7—C8—N472.22 (18)
O4—N2—C5—C6−179.41 (14)C8—N4—C9—C10−171.87 (14)
C7—N3—C6—O5−0.2 (3)N4—C9—C10—O660.2 (2)
C7—N3—C6—C5−179.75 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O5i0.90 (2)1.78 (2)2.677 (2)173 (2)
O4—H4O···O2ii0.95 (2)1.63 (2)2.5733 (18)172.3 (19)
O6—H6O···O20.87 (2)2.25 (2)3.101 (2)163.4 (18)
N3—H3N···O6ii0.86 (2)2.11 (2)2.940 (2)162.6 (18)
N4—H4N···O1iii0.970 (19)1.93 (2)2.838 (2)155.1 (15)
N4—H5N···O1iv0.895 (18)1.921 (19)2.796 (2)165.1 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O5i0.90 (2)1.78 (2)2.677 (2)173 (2)
O4—H4O⋯O2ii0.95 (2)1.63 (2)2.5733 (18)172.3 (19)
O6—H6O⋯O20.87 (2)2.25 (2)3.101 (2)163.4 (18)
N3—H3N⋯O6ii0.86 (2)2.11 (2)2.940 (2)162.6 (18)
N4—H4N⋯O1iii0.970 (19)1.93 (2)2.838 (2)155.1 (15)
N4—H5N⋯O1iv0.895 (18)1.921 (19)2.796 (2)165.1 (17)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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