Literature DB >> 21577477

(Benzoato-κO)chlorido[(-)-sparteine-κN,N']zinc(II).

José Luis Alcántara-Flores, Nayeli Arias-López, Sylvain Bernès, René Gutiérrez, Yasmi Reyes Ortega.   

Abstract

The title complex, [Zn(C(7)H(5)O(2))Cl(C(15)H(26)N(2))], used for the magnetic dilution of the analogous Cu(II) complex, was synthesized through a direct synthesis route. The coordination geometry around Zn(II) is best described as distorted tetra-hedral, the largest deviation arising from the (-)-sparteine ligand, as is invariably found in complexes containing this rather rigid mol-ecule. The benzoate anion behaves as a monodentate ligand, with a non-coordinating Zn⋯O separation of 2.969 (5) Å. Mol-ecules are packed in the crystal without significant inter-molecular inter-actions. The shortest ZnZn separation [6.8186 (7) Å] is observed between mol-ecules related through the 2(1) screw axis. This is an important feature for the magnetic behaviour of the Cu(II) analogue, which is intended for modeling isolated metal centers in the active site of type 1 blue copper proteins.

Entities:  

Year:  2009        PMID: 21577477      PMCID: PMC2969941          DOI: 10.1107/S1600536809033625

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related ZnII and CuII complexes bearing sparteine as ligand, see: Alcántara-Flores, Bernès et al. (2003 ▶); Alcántara-Flores, Vázquez-Bravo et al. (2003 ▶); Jasiewicz et al. (2005 ▶); Lee et al. (2002 ▶): Reyes-Ortega et al. (2006 ▶). For the κO-coord­ination mode of benzoate, see: Shanmuga Sundara Raj et al. (2000 ▶).

Experimental

Crystal data

[Zn(C7H5O2)Cl(C15H26N2)] M = 456.31 Monoclinic, a = 8.7784 (9) Å b = 11.8238 (13) Å c = 10.8438 (11) Å β = 109.671 (8)° V = 1059.84 (19) Å3 Z = 2 Mo Kα radiation μ = 1.31 mm−1 T = 296 K 0.34 × 0.26 × 0.04 mm

Data collection

Bruker P4 diffractometer Absorption correction: ψ scan (XSCANS; Siemens, 1996 ▶) T min = 0.760, T max = 0.951 3583 measured reflections 2166 independent reflections 1812 reflections with I > 2σ(I) R int = 0.033 2 standard reflections every 48 reflections intensity decay: 1.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.069 S = 1.01 2166 reflections 254 parameters 1 restraint H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.31 e Å−3 Absolute structure: Flack (1983 ▶), 199 Friedel pairs Flack parameter: −0.001 (16) Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033625/kj2131sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033625/kj2131Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H5O2)Cl(C15H26N2)]F(000) = 480
Mr = 456.31Dx = 1.430 Mg m3
Monoclinic, P21Melting point = 459–461 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 8.7784 (9) ÅCell parameters from 49 reflections
b = 11.8238 (13) Åθ = 3.7–10.8°
c = 10.8438 (11) ŵ = 1.31 mm1
β = 109.671 (8)°T = 296 K
V = 1059.84 (19) Å3Plate, colourless
Z = 20.34 × 0.26 × 0.04 mm
Bruker P4 diffractometer1812 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
graphiteθmax = 25.0°, θmin = 2.0°
ω scansh = −10→5
Absorption correction: ψ scan (XSCANS; Siemens, 1996)k = −14→1
Tmin = 0.760, Tmax = 0.951l = −12→12
3583 measured reflections2 standard reflections every 48 reflections
2166 independent reflections intensity decay: 1.5%
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033w = 1/[σ2(Fo2) + (0.0305P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.069(Δ/σ)max < 0.001
S = 1.00Δρmax = 0.36 e Å3
2166 reflectionsΔρmin = −0.30 e Å3
254 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0038 (9)
0 constraintsAbsolute structure: Flack (1983), 199 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.001 (16)
Secondary atom site location: difference Fourier map
xyzUiso*/Ueq
Zn10.35428 (6)0.83945 (5)0.07075 (4)0.03626 (17)
Cl10.59957 (15)0.88938 (12)0.07478 (13)0.0568 (4)
O10.1273 (6)0.8988 (4)−0.1933 (5)0.0736 (14)
O20.2371 (4)0.7472 (3)−0.0791 (3)0.0593 (10)
N10.2098 (5)0.9334 (3)0.1500 (4)0.0395 (10)
C20.1470 (6)1.0382 (5)0.0733 (5)0.0561 (15)
H2B0.07281.07570.10900.067*
H2C0.08741.0180−0.01680.067*
C30.2813 (8)1.1188 (5)0.0761 (7)0.0694 (18)
H3B0.23531.18650.02710.083*
H3C0.35111.08360.03430.083*
C40.3824 (8)1.1517 (5)0.2180 (7)0.0728 (19)
H4B0.47511.19640.21830.087*
H4C0.31731.19670.25620.087*
C50.4390 (6)1.0444 (5)0.2981 (6)0.0540 (14)
H5A0.51531.00510.26610.065*
H5B0.49491.06480.38880.065*
C60.2997 (6)0.9655 (4)0.2909 (5)0.0439 (12)
H6C0.22391.00880.32120.053*
C70.3460 (5)0.8603 (4)0.3779 (4)0.0414 (14)
H7B0.40030.88630.46790.050*
C80.1909 (6)0.8004 (5)0.3750 (5)0.0534 (14)
H8C0.21530.73820.43690.064*
H8D0.11930.85270.39770.064*
C90.1123 (6)0.7570 (4)0.2361 (5)0.0448 (12)
H9A0.01110.71950.23200.054*
C100.0684 (5)0.8584 (5)0.1438 (5)0.0473 (15)
H10A0.01960.83110.05480.057*
H10B−0.01210.90340.16470.057*
C110.2198 (5)0.6685 (4)0.2039 (5)0.0396 (12)
H11A0.16850.64910.11120.047*
C120.2309 (6)0.5589 (5)0.2815 (5)0.0481 (13)
H12A0.27170.57610.37440.058*
H12B0.12330.52720.26140.058*
C130.3404 (7)0.4711 (5)0.2515 (6)0.0583 (15)
H13A0.35030.40580.30780.070*
H13B0.29360.44630.16130.070*
C140.5068 (7)0.5220 (5)0.2737 (5)0.0523 (14)
H14A0.57440.46770.24920.063*
H14B0.55800.53990.36580.063*
C150.4904 (6)0.6294 (4)0.1917 (4)0.0389 (11)
H15A0.59710.66160.20860.047*
H15B0.44810.60900.09970.047*
N160.3824 (4)0.7178 (3)0.2180 (3)0.0312 (8)
C170.4586 (5)0.7755 (4)0.3460 (4)0.0400 (11)
H17A0.55510.81470.34470.048*
H17B0.49150.71900.41480.048*
C180.0832 (5)0.7189 (4)−0.2985 (4)0.0352 (11)
C190.1471 (6)0.6117 (4)−0.2996 (5)0.0427 (12)
H19A0.23130.5866−0.22690.051*
C200.0874 (6)0.5418 (5)−0.4072 (5)0.0517 (14)
H20A0.13220.4705−0.40670.062*
C21−0.0384 (6)0.5774 (6)−0.5152 (6)0.0551 (16)
H21C−0.07830.5305−0.58780.066*
C22−0.1042 (6)0.6824 (6)−0.5147 (5)0.0584 (16)
H22C−0.19060.7056−0.58710.070*
C23−0.0445 (5)0.7555 (5)−0.4080 (4)0.0475 (13)
H23C−0.08880.8271−0.40970.057*
C240.1522 (7)0.7978 (6)−0.1842 (6)0.0446 (14)
U11U22U33U12U13U23
Zn10.0429 (3)0.0340 (3)0.0326 (2)0.0013 (3)0.01358 (19)0.0000 (3)
Cl10.0589 (8)0.0505 (7)0.0747 (8)−0.0089 (7)0.0404 (7)−0.0045 (7)
O10.100 (4)0.049 (3)0.059 (3)0.014 (3)0.010 (2)−0.010 (2)
O20.078 (2)0.055 (2)0.0324 (18)0.005 (2)0.0018 (17)−0.0018 (18)
N10.044 (2)0.032 (2)0.041 (2)0.006 (2)0.0127 (19)−0.0016 (19)
C20.066 (4)0.046 (3)0.059 (3)0.022 (3)0.024 (3)0.005 (3)
C30.097 (5)0.035 (3)0.089 (5)0.016 (3)0.048 (4)0.016 (3)
C40.091 (5)0.037 (4)0.102 (5)−0.004 (4)0.048 (4)−0.009 (4)
C50.065 (4)0.042 (3)0.057 (3)−0.008 (3)0.022 (3)−0.017 (3)
C60.055 (3)0.035 (3)0.044 (3)0.002 (3)0.021 (3)−0.009 (2)
C70.057 (3)0.041 (4)0.028 (2)−0.004 (2)0.0160 (19)−0.010 (2)
C80.073 (3)0.044 (3)0.057 (3)−0.002 (3)0.039 (3)−0.004 (2)
C90.038 (3)0.043 (3)0.057 (3)−0.006 (2)0.021 (2)−0.008 (3)
C100.037 (2)0.045 (4)0.060 (3)0.003 (2)0.018 (2)0.002 (3)
C110.036 (3)0.044 (3)0.037 (3)−0.010 (2)0.011 (2)−0.006 (2)
C120.052 (3)0.039 (3)0.054 (3)−0.015 (3)0.019 (3)0.001 (2)
C130.082 (4)0.036 (3)0.058 (3)−0.010 (3)0.025 (3)0.002 (3)
C140.066 (4)0.041 (3)0.050 (3)0.013 (3)0.019 (3)0.010 (3)
C150.047 (3)0.036 (3)0.036 (2)0.004 (2)0.018 (2)−0.001 (2)
N160.035 (2)0.030 (2)0.0298 (18)−0.0029 (18)0.0128 (16)−0.0057 (16)
C170.047 (3)0.041 (3)0.026 (2)−0.005 (2)0.004 (2)−0.005 (2)
C180.031 (3)0.049 (3)0.025 (2)−0.005 (2)0.008 (2)0.000 (2)
C190.043 (3)0.043 (3)0.040 (3)0.003 (2)0.012 (2)0.003 (2)
C200.055 (3)0.049 (3)0.057 (3)−0.005 (3)0.027 (3)−0.009 (3)
C210.047 (4)0.073 (5)0.047 (4)−0.018 (4)0.019 (3)−0.019 (3)
C220.039 (3)0.091 (5)0.037 (3)−0.003 (3)0.003 (2)−0.001 (3)
C230.041 (3)0.057 (3)0.043 (3)0.008 (3)0.012 (2)0.006 (3)
C240.049 (3)0.046 (3)0.039 (3)0.003 (3)0.015 (3)0.000 (3)
Zn1—O21.940 (3)C10—H10A0.9700
Zn1—N12.077 (4)C10—H10B0.9700
Zn1—N162.101 (4)C11—N161.501 (6)
Zn1—Cl12.2189 (13)C11—C121.530 (7)
O1—C241.213 (6)C11—H11A0.9800
O2—C241.280 (7)C12—C131.523 (7)
N1—C21.491 (6)C12—H12A0.9700
N1—C101.509 (6)C12—H12B0.9700
N1—C61.514 (6)C13—C141.522 (7)
C2—C31.508 (8)C13—H13A0.9700
C2—H2B0.9700C13—H13B0.9700
C2—H2C0.9700C14—C151.529 (7)
C3—C41.545 (9)C14—H14A0.9700
C3—H3B0.9700C14—H14B0.9700
C3—H3C0.9700C15—N161.502 (6)
C4—C51.522 (9)C15—H15A0.9700
C4—H4B0.9700C15—H15B0.9700
C4—H4C0.9700N16—C171.488 (5)
C5—C61.519 (7)C17—H17A0.9700
C5—H5A0.9700C17—H17B0.9700
C5—H5B0.9700C18—C191.387 (7)
C6—C71.532 (7)C18—C231.399 (6)
C6—H6C0.9800C18—C241.506 (8)
C7—C81.526 (7)C19—C201.381 (7)
C7—C171.527 (6)C19—H19A0.9300
C7—H7B0.9800C20—C211.377 (8)
C8—C91.520 (7)C20—H20A0.9300
C8—H8C0.9700C21—C221.370 (9)
C8—H8D0.9700C21—H21C0.9300
C9—C101.526 (7)C22—C231.397 (8)
C9—C111.527 (7)C22—H22C0.9300
C9—H9A0.9800C23—H23C0.9300
O2—Zn1—N1114.94 (15)C9—C10—H10B108.7
O2—Zn1—N1698.37 (14)H10A—C10—H10B107.6
N1—Zn1—N1689.06 (14)N16—C11—C9110.5 (4)
O2—Zn1—Cl1113.80 (12)N16—C11—C12113.0 (4)
N1—Zn1—Cl1124.97 (12)C9—C11—C12112.6 (4)
N16—Zn1—Cl1107.58 (10)N16—C11—H11A106.8
C24—O2—Zn1118.0 (4)C9—C11—H11A106.8
C2—N1—C10108.6 (4)C12—C11—H11A106.8
C2—N1—C6108.9 (4)C13—C12—C11112.8 (4)
C10—N1—C6109.5 (4)C13—C12—H12A109.0
C2—N1—Zn1112.1 (3)C11—C12—H12A109.0
C10—N1—Zn1106.0 (3)C13—C12—H12B109.0
C6—N1—Zn1111.6 (3)C11—C12—H12B109.0
N1—C2—C3112.0 (4)H12A—C12—H12B107.8
N1—C2—H2B109.2C14—C13—C12109.7 (4)
C3—C2—H2B109.2C14—C13—H13A109.7
N1—C2—H2C109.2C12—C13—H13A109.7
C3—C2—H2C109.2C14—C13—H13B109.7
H2B—C2—H2C107.9C12—C13—H13B109.7
C2—C3—C4111.2 (5)H13A—C13—H13B108.2
C2—C3—H3B109.4C13—C14—C15109.8 (4)
C4—C3—H3B109.4C13—C14—H14A109.7
C2—C3—H3C109.4C15—C14—H14A109.7
C4—C3—H3C109.4C13—C14—H14B109.7
H3B—C3—H3C108.0C15—C14—H14B109.7
C5—C4—C3109.1 (5)H14A—C14—H14B108.2
C5—C4—H4B109.9N16—C15—C14114.2 (4)
C3—C4—H4B109.9N16—C15—H15A108.7
C5—C4—H4C109.9C14—C15—H15A108.7
C3—C4—H4C109.9N16—C15—H15B108.7
H4B—C4—H4C108.3C14—C15—H15B108.7
C6—C5—C4112.3 (5)H15A—C15—H15B107.6
C6—C5—H5A109.1C17—N16—C11112.8 (3)
C4—C5—H5A109.1C17—N16—C15112.5 (3)
C6—C5—H5B109.1C11—N16—C15110.4 (3)
C4—C5—H5B109.1C17—N16—Zn1107.2 (3)
H5A—C5—H5B107.9C11—N16—Zn1108.9 (3)
N1—C6—C5110.0 (4)C15—N16—Zn1104.6 (3)
N1—C6—C7111.0 (4)N16—C17—C7113.0 (4)
C5—C6—C7115.2 (4)N16—C17—H17A109.0
N1—C6—H6C106.7C7—C17—H17A109.0
C5—C6—H6C106.7N16—C17—H17B109.0
C7—C6—H6C106.7C7—C17—H17B109.0
C8—C7—C17109.4 (4)H17A—C17—H17B107.8
C8—C7—C6108.3 (4)C19—C18—C23119.1 (4)
C17—C7—C6116.8 (4)C19—C18—C24121.4 (4)
C8—C7—H7B107.3C23—C18—C24119.5 (5)
C17—C7—H7B107.3C20—C19—C18120.9 (5)
C6—C7—H7B107.3C20—C19—H19A119.5
C9—C8—C7106.4 (4)C18—C19—H19A119.5
C9—C8—H8C110.5C21—C20—C19120.2 (6)
C7—C8—H8C110.5C21—C20—H20A119.9
C9—C8—H8D110.5C19—C20—H20A119.9
C7—C8—H8D110.5C22—C21—C20119.5 (5)
H8C—C8—H8D108.6C22—C21—H21C120.3
C8—C9—C10108.3 (4)C20—C21—H21C120.3
C8—C9—C11110.4 (4)C21—C22—C23121.5 (5)
C10—C9—C11115.3 (4)C21—C22—H22C119.3
C8—C9—H9A107.5C23—C22—H22C119.3
C10—C9—H9A107.5C22—C23—C18118.8 (5)
C11—C9—H9A107.5C22—C23—H23C120.6
N1—C10—C9114.2 (4)C18—C23—H23C120.6
N1—C10—H10A108.7O1—C24—O2124.5 (6)
C9—C10—H10A108.7O1—C24—C18122.2 (6)
N1—C10—H10B108.7O2—C24—C18113.3 (5)
N1—Zn1—O2—C2465.5 (4)N16—C11—C12—C13−52.9 (5)
N16—Zn1—O2—C24158.3 (4)C9—C11—C12—C13−179.0 (4)
Cl1—Zn1—O2—C24−88.2 (4)C11—C12—C13—C1454.9 (6)
O2—Zn1—N1—C2−79.6 (3)C12—C13—C14—C15−55.7 (6)
N16—Zn1—N1—C2−178.4 (3)C13—C14—C15—N1657.1 (5)
Cl1—Zn1—N1—C270.6 (3)C9—C11—N16—C1750.9 (5)
O2—Zn1—N1—C1038.7 (3)C12—C11—N16—C17−76.3 (5)
N16—Zn1—N1—C10−60.1 (3)C9—C11—N16—C15177.7 (4)
Cl1—Zn1—N1—C10−171.0 (2)C12—C11—N16—C1550.5 (5)
O2—Zn1—N1—C6157.9 (3)C9—C11—N16—Zn1−68.0 (4)
N16—Zn1—N1—C659.1 (3)C12—C11—N16—Zn1164.8 (3)
Cl1—Zn1—N1—C6−51.9 (3)C14—C15—N16—C1773.2 (5)
C10—N1—C2—C3179.2 (4)C14—C15—N16—C11−53.7 (5)
C6—N1—C2—C360.0 (5)C14—C15—N16—Zn1−170.7 (3)
Zn1—N1—C2—C3−64.0 (5)O2—Zn1—N16—C17−174.8 (3)
N1—C2—C3—C4−57.7 (6)N1—Zn1—N16—C17−59.8 (3)
C2—C3—C4—C553.0 (7)Cl1—Zn1—N16—C1766.8 (3)
C3—C4—C5—C6−54.2 (7)O2—Zn1—N16—C11−52.6 (3)
C2—N1—C6—C5−59.4 (5)N1—Zn1—N16—C1162.5 (3)
C10—N1—C6—C5−178.0 (4)Cl1—Zn1—N16—C11−170.9 (2)
Zn1—N1—C6—C564.9 (4)O2—Zn1—N16—C1565.5 (3)
C2—N1—C6—C7172.0 (4)N1—Zn1—N16—C15−179.4 (3)
C10—N1—C6—C753.3 (5)Cl1—Zn1—N16—C15−52.8 (3)
Zn1—N1—C6—C7−63.7 (4)C11—N16—C17—C7−50.6 (5)
C4—C5—C6—N158.4 (6)C15—N16—C17—C7−176.3 (4)
C4—C5—C6—C7−175.3 (4)Zn1—N16—C17—C769.2 (4)
N1—C6—C7—C8−62.6 (5)C8—C7—C17—N1656.5 (5)
C5—C6—C7—C8171.5 (4)C6—C7—C17—N16−67.0 (5)
N1—C6—C7—C1761.4 (5)C23—C18—C19—C200.6 (7)
C5—C6—C7—C17−64.4 (5)C24—C18—C19—C20−177.3 (5)
C17—C7—C8—C9−61.8 (5)C18—C19—C20—C21−0.6 (8)
C6—C7—C8—C966.6 (5)C19—C20—C21—C22−0.3 (8)
C7—C8—C9—C10−63.1 (5)C20—C21—C22—C231.3 (9)
C7—C8—C9—C1164.1 (5)C21—C22—C23—C18−1.4 (8)
C2—N1—C10—C9−170.5 (4)C19—C18—C23—C220.4 (7)
C6—N1—C10—C9−51.7 (5)C24—C18—C23—C22178.3 (5)
Zn1—N1—C10—C968.8 (4)Zn1—O2—C24—O1−7.4 (9)
C8—C9—C10—N157.6 (5)Zn1—O2—C24—C18173.0 (3)
C11—C9—C10—N1−66.7 (5)C19—C18—C24—O1161.3 (6)
C8—C9—C11—N16−58.9 (5)C23—C18—C24—O1−16.6 (9)
C10—C9—C11—N1664.3 (5)C19—C18—C24—O2−19.1 (7)
C8—C9—C11—C1268.5 (5)C23—C18—C24—O2163.1 (5)
C10—C9—C11—C12−168.3 (4)
Zn1—O21.940 (3)
Zn1—N12.077 (4)
Zn1—N162.101 (4)
Zn1—Cl12.2189 (13)
O2—Zn1—N1114.94 (15)
O2—Zn1—N1698.37 (14)
N1—Zn1—N1689.06 (14)
O2—Zn1—Cl1113.80 (12)
N1—Zn1—Cl1124.97 (12)
N16—Zn1—Cl1107.58 (10)
  4 in total

1.  Bis(2-aminopyridine-N)bis(benzoato-O)zinc.

Authors:  S S Raj; H K Fun; P S Zhao; F F Jian; L D Lu; X J Yang; X Wang
Journal:  Acta Crystallogr C       Date:  2000-07       Impact factor: 1.172

2.  The triclinic polymorph of dibromo[(-)-sparteine-kappa2N,N']zinc(II).

Authors:  José Luis Alcántara-Flores; Sylvain Bernès; Yasmi Reyes-Ortega; Rafael Zamorano-Ulloa
Journal:  Acta Crystallogr C       Date:  2003-02-11       Impact factor: 1.172

3.  Dibromo[(-)-sparteine-kappa2N,N']zinc(II).

Authors:  Yong-Min Lee; Sung Kwon Kang; Young-Inn Kim; Sung-Nak Choi
Journal:  Acta Crystallogr C       Date:  2002-07-31       Impact factor: 1.172

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  4 in total

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