| Literature DB >> 21577475 |
Valentina A Kalibabchuk, Natalia I Usenko, Irina A Golenya, Turganbay S Iskenderov, Matti Haukka.
Abstract
In the title compound, [CaCu(2)(C(9)H(13)N(4)O(4))(2)(CH(3)OH)(2)](n), the Ca(II) atom lies on an inversion center and is situated in a moderately distorted octa-hedral environment. The Cu(II) atom is in a distorted square-pyramidal geometry, defined by four N atoms belonging to the amide and oxime groups of the triply deprotonated residue of N,N'-bis-(2-hydroxy-imino-propano-yl)propane-1,3-diamine (H(4)pap) and one oxime O atom from a neighboring Hpap ligand at the apical site, forming a dimeric [Cu(2)(Hpap)(2)](2-) unit. Each dimeric unit connects four Ca atoms and each Ca atom links four [Cu(2)(Hpap)(2)](2-) units through Ca-O(amide) bonds, leading to a three-dimensional framework. The crystal structure involves intra- and inter-molecular O-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21577475 PMCID: PMC2970044 DOI: 10.1107/S1600536809033467
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [CaCu2(C9H13N4O4)2(CH4O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3254 reflections |
| θ = 1.0–27.5° | |
| µ = 1.83 mm−1 | |
| β = 97.882 (2)° | Block, dark red |
| 0.28 × 0.24 × 0.13 mm | |
| Nonius KappaCCD diffractometer | 3074 independent reflections |
| Radiation source: fine-focus sealed tube | 2573 reflections with |
| horizontally mounted graphite crystal | |
| Detector resolution: 9 pixels mm-1 | θmax = 27.5°, θmin = 2.6° |
| φ and ω scans with κ offset | |
| Absorption correction: multi-scan ( | |
| 8392 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3074 reflections | (Δ/σ)max = 0.002 |
| 192 parameters | Δρmax = 1.11 e Å−3 |
| 0 restraints | Δρmin = −0.56 e Å−3 |
| Cu1 | 0.07005 (3) | 0.90813 (3) | 0.122024 (17) | 0.01389 (10) | |
| Ca1 | 0.0000 | 1.0000 | 0.5000 | 0.01418 (14) | |
| O1 | −0.02176 (17) | 1.23359 (18) | 0.11376 (10) | 0.0201 (4) | |
| H1O | 0.0287 | 1.2169 | 0.0643 | 0.030* | |
| O2 | 0.11916 (16) | 1.14306 (18) | −0.00651 (10) | 0.0171 (3) | |
| O3 | −0.05881 (17) | 0.92919 (19) | 0.35557 (10) | 0.0213 (4) | |
| O4 | 0.38614 (16) | 0.70750 (19) | 0.04006 (11) | 0.0210 (4) | |
| O5 | −0.21320 (16) | 1.12267 (19) | 0.48180 (11) | 0.0219 (4) | |
| H5O | −0.2529 | 1.2181 | 0.4868 | 0.033* | |
| N1 | −0.01214 (18) | 1.0977 (2) | 0.15866 (12) | 0.0146 (4) | |
| N2 | 0.01537 (19) | 0.8358 (2) | 0.23095 (12) | 0.0173 (4) | |
| N3 | 0.1956 (2) | 0.7474 (2) | 0.10597 (12) | 0.0180 (4) | |
| N4 | 0.15835 (18) | 1.0068 (2) | 0.03093 (12) | 0.0144 (4) | |
| C1 | −0.1226 (3) | 1.2240 (3) | 0.27158 (17) | 0.0288 (6) | |
| H1A | −0.0570 | 1.3063 | 0.2843 | 0.043* | |
| H1B | −0.1542 | 1.1913 | 0.3259 | 0.043* | |
| H1C | −0.1989 | 1.2607 | 0.2305 | 0.043* | |
| C2 | −0.0587 (2) | 1.0934 (3) | 0.23219 (15) | 0.0169 (5) | |
| C3 | −0.0343 (2) | 0.9408 (3) | 0.27836 (15) | 0.0168 (5) | |
| C4 | 0.0562 (3) | 0.6895 (3) | 0.27209 (15) | 0.0225 (5) | |
| H4A | −0.0109 | 0.6109 | 0.2505 | 0.027* | |
| H4B | 0.0575 | 0.6985 | 0.3361 | 0.027* | |
| C5 | 0.1924 (3) | 0.6394 (3) | 0.25333 (17) | 0.0294 (6) | |
| H5A | 0.2165 | 0.5452 | 0.2872 | 0.035* | |
| H5B | 0.2581 | 0.7185 | 0.2762 | 0.035* | |
| C6 | 0.2103 (3) | 0.6087 (3) | 0.15904 (17) | 0.0251 (5) | |
| H6A | 0.3006 | 0.5648 | 0.1570 | 0.030* | |
| H6B | 0.1429 | 0.5329 | 0.1340 | 0.030* | |
| C7 | 0.2839 (2) | 0.7824 (3) | 0.05361 (14) | 0.0163 (5) | |
| C8 | 0.2556 (2) | 0.9315 (3) | 0.00510 (14) | 0.0158 (4) | |
| C9 | 0.3318 (2) | 0.9800 (3) | −0.06579 (15) | 0.0219 (5) | |
| H9A | 0.2709 | 1.0303 | −0.1120 | 0.033* | |
| H9B | 0.3720 | 0.8905 | −0.0899 | 0.033* | |
| H9C | 0.4028 | 1.0511 | −0.0423 | 0.033* | |
| C10 | −0.3241 (2) | 1.0385 (3) | 0.43680 (17) | 0.0251 (5) | |
| H10A | −0.2903 | 0.9503 | 0.4076 | 0.038* | |
| H10B | −0.3758 | 1.1041 | 0.3931 | 0.038* | |
| H10C | −0.3821 | 1.0035 | 0.4789 | 0.038* |
| Cu1 | 0.01633 (15) | 0.01304 (15) | 0.01304 (14) | 0.00299 (10) | 0.00462 (10) | 0.00150 (10) |
| Ca1 | 0.0144 (3) | 0.0150 (3) | 0.0135 (3) | −0.0026 (2) | 0.0032 (2) | −0.0004 (2) |
| O1 | 0.0261 (9) | 0.0151 (8) | 0.0197 (8) | 0.0043 (7) | 0.0050 (7) | 0.0032 (7) |
| O2 | 0.0183 (8) | 0.0135 (7) | 0.0195 (8) | 0.0018 (6) | 0.0021 (6) | 0.0054 (6) |
| O3 | 0.0271 (9) | 0.0250 (9) | 0.0130 (8) | −0.0030 (7) | 0.0071 (7) | −0.0015 (7) |
| O4 | 0.0192 (8) | 0.0214 (8) | 0.0231 (8) | 0.0078 (7) | 0.0053 (7) | −0.0014 (7) |
| O5 | 0.0176 (9) | 0.0183 (8) | 0.0293 (9) | 0.0011 (6) | 0.0012 (7) | −0.0042 (7) |
| N1 | 0.0148 (9) | 0.0136 (9) | 0.0153 (9) | 0.0007 (7) | 0.0015 (7) | 0.0017 (7) |
| N2 | 0.0221 (10) | 0.0158 (9) | 0.0146 (9) | 0.0019 (8) | 0.0053 (8) | 0.0026 (8) |
| N3 | 0.0225 (10) | 0.0155 (9) | 0.0167 (9) | 0.0049 (8) | 0.0057 (8) | 0.0039 (8) |
| N4 | 0.0139 (9) | 0.0140 (9) | 0.0148 (9) | 0.0009 (7) | 0.0003 (7) | 0.0009 (7) |
| C1 | 0.0398 (16) | 0.0247 (13) | 0.0239 (13) | 0.0110 (11) | 0.0120 (11) | −0.0002 (11) |
| C2 | 0.0155 (11) | 0.0186 (11) | 0.0165 (11) | 0.0013 (9) | 0.0020 (9) | −0.0017 (9) |
| C3 | 0.0148 (11) | 0.0200 (11) | 0.0151 (10) | −0.0021 (9) | 0.0007 (8) | 0.0000 (9) |
| C4 | 0.0309 (14) | 0.0201 (12) | 0.0175 (11) | 0.0041 (10) | 0.0071 (10) | 0.0046 (10) |
| C5 | 0.0306 (14) | 0.0299 (14) | 0.0277 (14) | 0.0073 (11) | 0.0043 (11) | 0.0093 (12) |
| C6 | 0.0306 (14) | 0.0202 (12) | 0.0257 (13) | 0.0113 (10) | 0.0082 (11) | 0.0045 (10) |
| C7 | 0.0169 (11) | 0.0165 (11) | 0.0146 (10) | 0.0030 (9) | −0.0008 (8) | −0.0016 (9) |
| C8 | 0.0148 (11) | 0.0186 (11) | 0.0138 (10) | 0.0004 (9) | 0.0010 (8) | −0.0012 (9) |
| C9 | 0.0195 (12) | 0.0265 (13) | 0.0209 (12) | 0.0005 (10) | 0.0065 (9) | 0.0019 (10) |
| C10 | 0.0199 (12) | 0.0237 (12) | 0.0304 (13) | −0.0006 (10) | −0.0007 (10) | −0.0041 (11) |
| Cu1—N1 | 1.9751 (18) | C1—C2 | 1.486 (3) |
| Cu1—N2 | 1.9469 (18) | C1—H1A | 0.9800 |
| Cu1—N3 | 1.9320 (19) | C1—H1B | 0.9800 |
| Cu1—N4 | 1.9650 (18) | C1—H1C | 0.9800 |
| Cu1—O2i | 2.4646 (16) | C2—C3 | 1.522 (3) |
| Ca1—O3 | 2.3134 (16) | C4—C5 | 1.504 (4) |
| Ca1—O4ii | 2.2818 (16) | C4—H4A | 0.9900 |
| Ca1—O5 | 2.3811 (16) | C4—H4B | 0.9900 |
| O1—N1 | 1.377 (2) | C5—C6 | 1.516 (4) |
| O1—H1O | 0.9852 | C5—H5A | 0.9900 |
| O2—N4 | 1.363 (2) | C5—H5B | 0.9900 |
| O3—C3 | 1.255 (3) | C6—H6A | 0.9900 |
| O4—C7 | 1.262 (3) | C6—H6B | 0.9900 |
| O5—C10 | 1.436 (3) | C7—C8 | 1.516 (3) |
| O5—H5O | 0.9358 | C8—C9 | 1.482 (3) |
| N1—C2 | 1.287 (3) | C9—H9A | 0.9800 |
| N2—C3 | 1.317 (3) | C9—H9B | 0.9800 |
| N2—C4 | 1.466 (3) | C9—H9C | 0.9800 |
| N3—C7 | 1.316 (3) | C10—H10A | 0.9800 |
| N3—C6 | 1.464 (3) | C10—H10B | 0.9800 |
| N4—C8 | 1.288 (3) | C10—H10C | 0.9800 |
| N3—Cu1—N2 | 98.02 (8) | H1B—C1—H1C | 109.5 |
| N3—Cu1—N4 | 82.10 (8) | N1—C2—C1 | 124.7 (2) |
| N2—Cu1—N4 | 166.31 (8) | N1—C2—C3 | 112.64 (19) |
| N3—Cu1—N1 | 163.47 (8) | C1—C2—C3 | 122.6 (2) |
| N2—Cu1—N1 | 81.29 (8) | O3—C3—N2 | 127.6 (2) |
| N4—Cu1—N1 | 94.69 (8) | O3—C3—C2 | 118.5 (2) |
| N3—Cu1—O2i | 103.12 (7) | N2—C3—C2 | 113.87 (19) |
| N2—Cu1—O2i | 106.54 (7) | N2—C4—C5 | 112.4 (2) |
| N4—Cu1—O2i | 86.66 (6) | N2—C4—H4A | 109.1 |
| N1—Cu1—O2i | 92.83 (7) | C5—C4—H4A | 109.1 |
| O4iii—Ca1—O4ii | 180.00 (8) | N2—C4—H4B | 109.1 |
| O4iii—Ca1—O3iv | 91.40 (6) | C5—C4—H4B | 109.1 |
| O4ii—Ca1—O3iv | 88.60 (6) | H4A—C4—H4B | 107.9 |
| O4iii—Ca1—O3 | 88.60 (6) | C4—C5—C6 | 117.9 (2) |
| O4ii—Ca1—O3 | 91.40 (6) | C4—C5—H5A | 107.8 |
| O3iv—Ca1—O3 | 180.0 | C6—C5—H5A | 107.8 |
| O4iii—Ca1—O5 | 85.18 (6) | C4—C5—H5B | 107.8 |
| O4ii—Ca1—O5 | 94.82 (6) | C6—C5—H5B | 107.8 |
| O3iv—Ca1—O5 | 95.69 (6) | H5A—C5—H5B | 107.2 |
| O3—Ca1—O5 | 84.31 (6) | N3—C6—C5 | 112.0 (2) |
| O4iii—Ca1—O5iv | 94.82 (6) | N3—C6—H6A | 109.2 |
| O4ii—Ca1—O5iv | 85.18 (6) | C5—C6—H6A | 109.2 |
| O3iv—Ca1—O5iv | 84.31 (6) | N3—C6—H6B | 109.2 |
| O3—Ca1—O5iv | 95.69 (6) | C5—C6—H6B | 109.2 |
| O5—Ca1—O5iv | 180.0 | H6A—C6—H6B | 107.9 |
| N1—O1—H1O | 104.7 | O4—C7—N3 | 127.8 (2) |
| C10—O5—H5O | 100.9 | O4—C7—C8 | 118.0 (2) |
| C2—N1—O1 | 117.47 (18) | N3—C7—C8 | 114.15 (19) |
| C2—N1—Cu1 | 116.42 (15) | N4—C8—C9 | 124.9 (2) |
| O1—N1—Cu1 | 126.09 (14) | N4—C8—C7 | 112.86 (19) |
| C3—N2—C4 | 118.48 (19) | C9—C8—C7 | 122.2 (2) |
| C3—N2—Cu1 | 115.18 (15) | C8—C9—H9A | 109.5 |
| C4—N2—Cu1 | 124.40 (15) | C8—C9—H9B | 109.5 |
| C7—N3—C6 | 120.9 (2) | H9A—C9—H9B | 109.5 |
| C7—N3—Cu1 | 114.57 (15) | C8—C9—H9C | 109.5 |
| C6—N3—Cu1 | 123.60 (15) | H9A—C9—H9C | 109.5 |
| C8—N4—O2 | 120.42 (18) | H9B—C9—H9C | 109.5 |
| C8—N4—Cu1 | 115.63 (15) | O5—C10—H10A | 109.5 |
| O2—N4—Cu1 | 123.91 (13) | O5—C10—H10B | 109.5 |
| C2—C1—H1A | 109.5 | H10A—C10—H10B | 109.5 |
| C2—C1—H1B | 109.5 | O5—C10—H10C | 109.5 |
| H1A—C1—H1B | 109.5 | H10A—C10—H10C | 109.5 |
| C2—C1—H1C | 109.5 | H10B—C10—H10C | 109.5 |
| H1A—C1—H1C | 109.5 | ||
| N3—Cu1—N1—C2 | −87.3 (3) | N2—Cu1—N4—O2 | −93.4 (3) |
| N2—Cu1—N1—C2 | 1.52 (17) | N1—Cu1—N4—O2 | −21.15 (16) |
| N4—Cu1—N1—C2 | −165.30 (17) | O2i—Cu1—N4—O2 | 71.42 (16) |
| O2i—Cu1—N1—C2 | 107.82 (17) | Cu1i—Cu1—N4—O2 | 50.60 (13) |
| Cu1i—Cu1—N1—C2 | 150.40 (17) | O1—N1—C2—C1 | 0.4 (3) |
| N3—Cu1—N1—O1 | 91.4 (3) | Cu1—N1—C2—C1 | 179.3 (2) |
| N2—Cu1—N1—O1 | −179.78 (18) | O1—N1—C2—C3 | −176.28 (17) |
| N4—Cu1—N1—O1 | 13.41 (17) | Cu1—N1—C2—C3 | 2.5 (2) |
| O2i—Cu1—N1—O1 | −73.47 (17) | C4—N2—C3—O3 | −4.2 (4) |
| Cu1i—Cu1—N1—O1 | −30.90 (16) | Cu1—N2—C3—O3 | −169.08 (19) |
| N3—Cu1—N2—C3 | 157.38 (17) | C4—N2—C3—C2 | 173.6 (2) |
| N4—Cu1—N2—C3 | 67.8 (4) | Cu1—N2—C3—C2 | 8.8 (2) |
| N1—Cu1—N2—C3 | −5.93 (16) | N1—C2—C3—O3 | 170.6 (2) |
| O2i—Cu1—N2—C3 | −96.30 (17) | C1—C2—C3—O3 | −6.2 (3) |
| Cu1i—Cu1—N2—C3 | −65.8 (2) | N1—C2—C3—N2 | −7.4 (3) |
| N3—Cu1—N2—C4 | −6.4 (2) | C1—C2—C3—N2 | 175.8 (2) |
| N4—Cu1—N2—C4 | −96.0 (4) | C3—N2—C4—C5 | −133.0 (2) |
| N1—Cu1—N2—C4 | −169.8 (2) | Cu1—N2—C4—C5 | 30.3 (3) |
| O2i—Cu1—N2—C4 | 99.87 (19) | N2—C4—C5—C6 | −62.6 (3) |
| Cu1i—Cu1—N2—C4 | 130.39 (16) | C7—N3—C6—C5 | 132.3 (2) |
| N2—Cu1—N3—C7 | −159.43 (17) | Cu1—N3—C6—C5 | −35.9 (3) |
| N4—Cu1—N3—C7 | 6.74 (16) | C4—C5—C6—N3 | 65.8 (3) |
| N1—Cu1—N3—C7 | −73.0 (3) | Ca1v—O4—C7—N3 | 57.7 (5) |
| O2i—Cu1—N3—C7 | 91.42 (17) | Ca1v—O4—C7—C8 | −122.4 (3) |
| Cu1i—Cu1—N3—C7 | 45.67 (17) | C6—N3—C7—O4 | 1.4 (4) |
| N2—Cu1—N3—C6 | 9.4 (2) | Cu1—N3—C7—O4 | 170.55 (19) |
| N4—Cu1—N3—C6 | 175.6 (2) | C6—N3—C7—C8 | −178.6 (2) |
| N1—Cu1—N3—C6 | 95.8 (3) | Cu1—N3—C7—C8 | −9.4 (2) |
| O2i—Cu1—N3—C6 | −99.71 (19) | O2—N4—C8—C9 | −0.9 (3) |
| Cu1i—Cu1—N3—C6 | −145.46 (18) | Cu1—N4—C8—C9 | 176.75 (18) |
| N3—Cu1—N4—C8 | −2.44 (16) | O2—N4—C8—C7 | −179.45 (17) |
| N2—Cu1—N4—C8 | 89.0 (4) | Cu1—N4—C8—C7 | −1.8 (2) |
| N1—Cu1—N4—C8 | 161.24 (16) | O4—C7—C8—N4 | −172.59 (19) |
| O2i—Cu1—N4—C8 | −106.19 (16) | N3—C7—C8—N4 | 7.3 (3) |
| Cu1i—Cu1—N4—C8 | −127.01 (18) | O4—C7—C8—C9 | 8.9 (3) |
| N3—Cu1—N4—O2 | 175.17 (17) | N3—C7—C8—C9 | −171.2 (2) |
| H··· | ||||
| O1—H1O···O2 | 0.99 | 1.65 | 2.610 (2) | 165 |
| O5—H5O···O2vi | 0.94 | 1.79 | 2.681 (2) | 159 |
Selected bond lengths (Å)
| Cu1—N1 | 1.9751 (18) |
| Cu1—N2 | 1.9469 (18) |
| Cu1—N3 | 1.9320 (19) |
| Cu1—N4 | 1.9650 (18) |
| Cu1—O2i | 2.4646 (16) |
| Ca1—O3 | 2.3134 (16) |
| Ca1—O4ii | 2.2818 (16) |
| Ca1—O5 | 2.3811 (16) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.99 | 1.65 | 2.610 (2) | 165 |
| O5—H5 | 0.94 | 1.79 | 2.681 (2) | 159 |
Symmetry code: (iii) .