Literature DB >> 21577475

Poly[bis-[μ(4)-N-(2-hydroxy-imino-propion-yl)-N'-(2-oxidoimino-propion-yl)propane-1,3-diaminato]dimethano-lcalciumdicopper(II)].

Valentina A Kalibabchuk, Natalia I Usenko, Irina A Golenya, Turganbay S Iskenderov, Matti Haukka.   

Abstract

In the title compound, [CaCu(2)(C(9)H(13)N(4)O(4))(2)(CH(3)OH)(2)](n), the Ca(II) atom lies on an inversion center and is situated in a moderately distorted octa-hedral environment. The Cu(II) atom is in a distorted square-pyramidal geometry, defined by four N atoms belonging to the amide and oxime groups of the triply deprotonated residue of N,N'-bis-(2-hydroxy-imino-propano-yl)propane-1,3-diamine (H(4)pap) and one oxime O atom from a neighboring Hpap ligand at the apical site, forming a dimeric [Cu(2)(Hpap)(2)](2-) unit. Each dimeric unit connects four Ca atoms and each Ca atom links four [Cu(2)(Hpap)(2)](2-) units through Ca-O(amide) bonds, leading to a three-dimensional framework. The crystal structure involves intra- and inter-molecular O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577475      PMCID: PMC2970044          DOI: 10.1107/S1600536809033467

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination chemistry of tetra­dentate oxime-and-amide open-chain ligands, see: Duda et al. (1997 ▶); Fritsky et al. (1999 ▶). For oximes as efficient metal chelators, see: Gumienna-Kontecka et al. (2000 ▶); Onindo et al. (1995 ▶); Sliva et al. (1997a ▶,b ▶). For the use of oximes in stabilizing high oxidation states of metal ions, see: Fritsky et al. (1998 ▶, 2006 ▶). For related structures, see: Kanderal et al. (2005 ▶); Fritsky (1999 ▶); Fritsky et al. (2000 ▶); Mokhir et al. (2002 ▶); Moroz et al. (2008 ▶); Wörl et al. (2005 ▶).

Experimental

Crystal data

[CaCu2(C9H13N4O4)2(CH4O)2] M = 713.71 Monoclinic, a = 10.0554 (4) Å b = 8.7794 (3) Å c = 15.4465 (7) Å β = 97.882 (2)° V = 1350.74 (9) Å3 Z = 2 Mo Kα radiation μ = 1.83 mm−1 T = 120 K 0.28 × 0.24 × 0.13 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.622, T max = 0.796 8392 measured reflections 3074 independent reflections 2573 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.079 S = 1.04 3074 reflections 192 parameters H-atom parameters constrained Δρmax = 1.11 e Å−3 Δρmin = −0.56 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809033467/hy2216sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033467/hy2216Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CaCu2(C9H13N4O4)2(CH4O)2]F(000) = 736
Mr = 713.71Dx = 1.755 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3254 reflections
a = 10.0554 (4) Åθ = 1.0–27.5°
b = 8.7794 (3) ŵ = 1.83 mm1
c = 15.4465 (7) ÅT = 120 K
β = 97.882 (2)°Block, dark red
V = 1350.74 (9) Å30.28 × 0.24 × 0.13 mm
Z = 2
Nonius KappaCCD diffractometer3074 independent reflections
Radiation source: fine-focus sealed tube2573 reflections with I > 2σ(I)
horizontally mounted graphite crystalRint = 0.035
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 2.6°
φ and ω scans with κ offseth = −11→13
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −11→10
Tmin = 0.622, Tmax = 0.796l = −20→19
8392 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0351P)2 + 1.0009P] where P = (Fo2 + 2Fc2)/3
3074 reflections(Δ/σ)max = 0.002
192 parametersΔρmax = 1.11 e Å3
0 restraintsΔρmin = −0.56 e Å3
xyzUiso*/Ueq
Cu10.07005 (3)0.90813 (3)0.122024 (17)0.01389 (10)
Ca10.00001.00000.50000.01418 (14)
O1−0.02176 (17)1.23359 (18)0.11376 (10)0.0201 (4)
H1O0.02871.21690.06430.030*
O20.11916 (16)1.14306 (18)−0.00651 (10)0.0171 (3)
O3−0.05881 (17)0.92919 (19)0.35557 (10)0.0213 (4)
O40.38614 (16)0.70750 (19)0.04006 (11)0.0210 (4)
O5−0.21320 (16)1.12267 (19)0.48180 (11)0.0219 (4)
H5O−0.25291.21810.48680.033*
N1−0.01214 (18)1.0977 (2)0.15866 (12)0.0146 (4)
N20.01537 (19)0.8358 (2)0.23095 (12)0.0173 (4)
N30.1956 (2)0.7474 (2)0.10597 (12)0.0180 (4)
N40.15835 (18)1.0068 (2)0.03093 (12)0.0144 (4)
C1−0.1226 (3)1.2240 (3)0.27158 (17)0.0288 (6)
H1A−0.05701.30630.28430.043*
H1B−0.15421.19130.32590.043*
H1C−0.19891.26070.23050.043*
C2−0.0587 (2)1.0934 (3)0.23219 (15)0.0169 (5)
C3−0.0343 (2)0.9408 (3)0.27836 (15)0.0168 (5)
C40.0562 (3)0.6895 (3)0.27209 (15)0.0225 (5)
H4A−0.01090.61090.25050.027*
H4B0.05750.69850.33610.027*
C50.1924 (3)0.6394 (3)0.25333 (17)0.0294 (6)
H5A0.21650.54520.28720.035*
H5B0.25810.71850.27620.035*
C60.2103 (3)0.6087 (3)0.15904 (17)0.0251 (5)
H6A0.30060.56480.15700.030*
H6B0.14290.53290.13400.030*
C70.2839 (2)0.7824 (3)0.05361 (14)0.0163 (5)
C80.2556 (2)0.9315 (3)0.00510 (14)0.0158 (4)
C90.3318 (2)0.9800 (3)−0.06579 (15)0.0219 (5)
H9A0.27091.0303−0.11200.033*
H9B0.37200.8905−0.08990.033*
H9C0.40281.0511−0.04230.033*
C10−0.3241 (2)1.0385 (3)0.43680 (17)0.0251 (5)
H10A−0.29030.95030.40760.038*
H10B−0.37581.10410.39310.038*
H10C−0.38211.00350.47890.038*
U11U22U33U12U13U23
Cu10.01633 (15)0.01304 (15)0.01304 (14)0.00299 (10)0.00462 (10)0.00150 (10)
Ca10.0144 (3)0.0150 (3)0.0135 (3)−0.0026 (2)0.0032 (2)−0.0004 (2)
O10.0261 (9)0.0151 (8)0.0197 (8)0.0043 (7)0.0050 (7)0.0032 (7)
O20.0183 (8)0.0135 (7)0.0195 (8)0.0018 (6)0.0021 (6)0.0054 (6)
O30.0271 (9)0.0250 (9)0.0130 (8)−0.0030 (7)0.0071 (7)−0.0015 (7)
O40.0192 (8)0.0214 (8)0.0231 (8)0.0078 (7)0.0053 (7)−0.0014 (7)
O50.0176 (9)0.0183 (8)0.0293 (9)0.0011 (6)0.0012 (7)−0.0042 (7)
N10.0148 (9)0.0136 (9)0.0153 (9)0.0007 (7)0.0015 (7)0.0017 (7)
N20.0221 (10)0.0158 (9)0.0146 (9)0.0019 (8)0.0053 (8)0.0026 (8)
N30.0225 (10)0.0155 (9)0.0167 (9)0.0049 (8)0.0057 (8)0.0039 (8)
N40.0139 (9)0.0140 (9)0.0148 (9)0.0009 (7)0.0003 (7)0.0009 (7)
C10.0398 (16)0.0247 (13)0.0239 (13)0.0110 (11)0.0120 (11)−0.0002 (11)
C20.0155 (11)0.0186 (11)0.0165 (11)0.0013 (9)0.0020 (9)−0.0017 (9)
C30.0148 (11)0.0200 (11)0.0151 (10)−0.0021 (9)0.0007 (8)0.0000 (9)
C40.0309 (14)0.0201 (12)0.0175 (11)0.0041 (10)0.0071 (10)0.0046 (10)
C50.0306 (14)0.0299 (14)0.0277 (14)0.0073 (11)0.0043 (11)0.0093 (12)
C60.0306 (14)0.0202 (12)0.0257 (13)0.0113 (10)0.0082 (11)0.0045 (10)
C70.0169 (11)0.0165 (11)0.0146 (10)0.0030 (9)−0.0008 (8)−0.0016 (9)
C80.0148 (11)0.0186 (11)0.0138 (10)0.0004 (9)0.0010 (8)−0.0012 (9)
C90.0195 (12)0.0265 (13)0.0209 (12)0.0005 (10)0.0065 (9)0.0019 (10)
C100.0199 (12)0.0237 (12)0.0304 (13)−0.0006 (10)−0.0007 (10)−0.0041 (11)
Cu1—N11.9751 (18)C1—C21.486 (3)
Cu1—N21.9469 (18)C1—H1A0.9800
Cu1—N31.9320 (19)C1—H1B0.9800
Cu1—N41.9650 (18)C1—H1C0.9800
Cu1—O2i2.4646 (16)C2—C31.522 (3)
Ca1—O32.3134 (16)C4—C51.504 (4)
Ca1—O4ii2.2818 (16)C4—H4A0.9900
Ca1—O52.3811 (16)C4—H4B0.9900
O1—N11.377 (2)C5—C61.516 (4)
O1—H1O0.9852C5—H5A0.9900
O2—N41.363 (2)C5—H5B0.9900
O3—C31.255 (3)C6—H6A0.9900
O4—C71.262 (3)C6—H6B0.9900
O5—C101.436 (3)C7—C81.516 (3)
O5—H5O0.9358C8—C91.482 (3)
N1—C21.287 (3)C9—H9A0.9800
N2—C31.317 (3)C9—H9B0.9800
N2—C41.466 (3)C9—H9C0.9800
N3—C71.316 (3)C10—H10A0.9800
N3—C61.464 (3)C10—H10B0.9800
N4—C81.288 (3)C10—H10C0.9800
N3—Cu1—N298.02 (8)H1B—C1—H1C109.5
N3—Cu1—N482.10 (8)N1—C2—C1124.7 (2)
N2—Cu1—N4166.31 (8)N1—C2—C3112.64 (19)
N3—Cu1—N1163.47 (8)C1—C2—C3122.6 (2)
N2—Cu1—N181.29 (8)O3—C3—N2127.6 (2)
N4—Cu1—N194.69 (8)O3—C3—C2118.5 (2)
N3—Cu1—O2i103.12 (7)N2—C3—C2113.87 (19)
N2—Cu1—O2i106.54 (7)N2—C4—C5112.4 (2)
N4—Cu1—O2i86.66 (6)N2—C4—H4A109.1
N1—Cu1—O2i92.83 (7)C5—C4—H4A109.1
O4iii—Ca1—O4ii180.00 (8)N2—C4—H4B109.1
O4iii—Ca1—O3iv91.40 (6)C5—C4—H4B109.1
O4ii—Ca1—O3iv88.60 (6)H4A—C4—H4B107.9
O4iii—Ca1—O388.60 (6)C4—C5—C6117.9 (2)
O4ii—Ca1—O391.40 (6)C4—C5—H5A107.8
O3iv—Ca1—O3180.0C6—C5—H5A107.8
O4iii—Ca1—O585.18 (6)C4—C5—H5B107.8
O4ii—Ca1—O594.82 (6)C6—C5—H5B107.8
O3iv—Ca1—O595.69 (6)H5A—C5—H5B107.2
O3—Ca1—O584.31 (6)N3—C6—C5112.0 (2)
O4iii—Ca1—O5iv94.82 (6)N3—C6—H6A109.2
O4ii—Ca1—O5iv85.18 (6)C5—C6—H6A109.2
O3iv—Ca1—O5iv84.31 (6)N3—C6—H6B109.2
O3—Ca1—O5iv95.69 (6)C5—C6—H6B109.2
O5—Ca1—O5iv180.0H6A—C6—H6B107.9
N1—O1—H1O104.7O4—C7—N3127.8 (2)
C10—O5—H5O100.9O4—C7—C8118.0 (2)
C2—N1—O1117.47 (18)N3—C7—C8114.15 (19)
C2—N1—Cu1116.42 (15)N4—C8—C9124.9 (2)
O1—N1—Cu1126.09 (14)N4—C8—C7112.86 (19)
C3—N2—C4118.48 (19)C9—C8—C7122.2 (2)
C3—N2—Cu1115.18 (15)C8—C9—H9A109.5
C4—N2—Cu1124.40 (15)C8—C9—H9B109.5
C7—N3—C6120.9 (2)H9A—C9—H9B109.5
C7—N3—Cu1114.57 (15)C8—C9—H9C109.5
C6—N3—Cu1123.60 (15)H9A—C9—H9C109.5
C8—N4—O2120.42 (18)H9B—C9—H9C109.5
C8—N4—Cu1115.63 (15)O5—C10—H10A109.5
O2—N4—Cu1123.91 (13)O5—C10—H10B109.5
C2—C1—H1A109.5H10A—C10—H10B109.5
C2—C1—H1B109.5O5—C10—H10C109.5
H1A—C1—H1B109.5H10A—C10—H10C109.5
C2—C1—H1C109.5H10B—C10—H10C109.5
H1A—C1—H1C109.5
N3—Cu1—N1—C2−87.3 (3)N2—Cu1—N4—O2−93.4 (3)
N2—Cu1—N1—C21.52 (17)N1—Cu1—N4—O2−21.15 (16)
N4—Cu1—N1—C2−165.30 (17)O2i—Cu1—N4—O271.42 (16)
O2i—Cu1—N1—C2107.82 (17)Cu1i—Cu1—N4—O250.60 (13)
Cu1i—Cu1—N1—C2150.40 (17)O1—N1—C2—C10.4 (3)
N3—Cu1—N1—O191.4 (3)Cu1—N1—C2—C1179.3 (2)
N2—Cu1—N1—O1−179.78 (18)O1—N1—C2—C3−176.28 (17)
N4—Cu1—N1—O113.41 (17)Cu1—N1—C2—C32.5 (2)
O2i—Cu1—N1—O1−73.47 (17)C4—N2—C3—O3−4.2 (4)
Cu1i—Cu1—N1—O1−30.90 (16)Cu1—N2—C3—O3−169.08 (19)
N3—Cu1—N2—C3157.38 (17)C4—N2—C3—C2173.6 (2)
N4—Cu1—N2—C367.8 (4)Cu1—N2—C3—C28.8 (2)
N1—Cu1—N2—C3−5.93 (16)N1—C2—C3—O3170.6 (2)
O2i—Cu1—N2—C3−96.30 (17)C1—C2—C3—O3−6.2 (3)
Cu1i—Cu1—N2—C3−65.8 (2)N1—C2—C3—N2−7.4 (3)
N3—Cu1—N2—C4−6.4 (2)C1—C2—C3—N2175.8 (2)
N4—Cu1—N2—C4−96.0 (4)C3—N2—C4—C5−133.0 (2)
N1—Cu1—N2—C4−169.8 (2)Cu1—N2—C4—C530.3 (3)
O2i—Cu1—N2—C499.87 (19)N2—C4—C5—C6−62.6 (3)
Cu1i—Cu1—N2—C4130.39 (16)C7—N3—C6—C5132.3 (2)
N2—Cu1—N3—C7−159.43 (17)Cu1—N3—C6—C5−35.9 (3)
N4—Cu1—N3—C76.74 (16)C4—C5—C6—N365.8 (3)
N1—Cu1—N3—C7−73.0 (3)Ca1v—O4—C7—N357.7 (5)
O2i—Cu1—N3—C791.42 (17)Ca1v—O4—C7—C8−122.4 (3)
Cu1i—Cu1—N3—C745.67 (17)C6—N3—C7—O41.4 (4)
N2—Cu1—N3—C69.4 (2)Cu1—N3—C7—O4170.55 (19)
N4—Cu1—N3—C6175.6 (2)C6—N3—C7—C8−178.6 (2)
N1—Cu1—N3—C695.8 (3)Cu1—N3—C7—C8−9.4 (2)
O2i—Cu1—N3—C6−99.71 (19)O2—N4—C8—C9−0.9 (3)
Cu1i—Cu1—N3—C6−145.46 (18)Cu1—N4—C8—C9176.75 (18)
N3—Cu1—N4—C8−2.44 (16)O2—N4—C8—C7−179.45 (17)
N2—Cu1—N4—C889.0 (4)Cu1—N4—C8—C7−1.8 (2)
N1—Cu1—N4—C8161.24 (16)O4—C7—C8—N4−172.59 (19)
O2i—Cu1—N4—C8−106.19 (16)N3—C7—C8—N47.3 (3)
Cu1i—Cu1—N4—C8−127.01 (18)O4—C7—C8—C98.9 (3)
N3—Cu1—N4—O2175.17 (17)N3—C7—C8—C9−171.2 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O20.991.652.610 (2)165
O5—H5O···O2vi0.941.792.681 (2)159
Table 1

Selected bond lengths (Å)

Cu1—N11.9751 (18)
Cu1—N21.9469 (18)
Cu1—N31.9320 (19)
Cu1—N41.9650 (18)
Cu1—O2i2.4646 (16)
Ca1—O32.3134 (16)
Ca1—O4ii2.2818 (16)
Ca1—O52.3811 (16)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O20.991.652.610 (2)165
O5—H5O⋯O2iii0.941.792.681 (2)159

Symmetry code: (iii) .

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