Literature DB >> 21577463

Bis[μ-2-(2-pyridylmethyl-amino-meth-yl)phenolato]-κN,N',O:O;κO:N,N',O-bis-[(thio-cyanato-κN)copper(II)].

Gervas E Assey1, Yohannes Tesema, Teshome Yisgedu, Yilma Gultneh, Ray J Butcher.   

Abstract

The centrosymmetric binuclear complex, [Cu(2)(C(13)H(13)N(2)O)(2)(NCS)(2)], formed via phenolate oxygen bridges, involves the Cu(II) atoms in a distorted square-pyramidal coordination [τ = 0.197 (1)]. A CuCu separation of 3.2281 (3) Å is observed. The in-plane Cu-O(phenolate) distance [1.9342 (8) Å] is shorter than the axial distance [2.252 (8) Å]. The Cu-N(amine) and Cu-N(py) distances are similar [2.0095 (10) and 2.0192 (10) Å, respectively]. The Cu-N(thio-cyanate) distance [1.9678 (11) Å] is in the range found for Cu-N distances in previously determined structures containing coordinated thio-cyanate anions. There is an inter-molecular hydrogen bond between the amine H atom and the S atom of a coordinated thio-cyanate anion.

Entities:  

Year:  2009        PMID: 21577463      PMCID: PMC2970067          DOI: 10.1107/S1600536809031742

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemical properties, ligand binding properties and the synthesis of related copper complexes: Kuzmic et al. (1992 ▶); Lim et al. (2006 ▶); Rogers & Wolf (2002 ▶); Sharma et al. (2008 ▶); Yisgedu (2001 ▶). For related structures, see: Assey et al. (2009 ▶); Biswas et al. (2005 ▶); Sarkar et al. (2006 ▶); Shakya et al. (2006 ▶); Wang & Li (2005 ▶); You & Zhu (2004 ▶, 2005 ▶); You (2005 ▶). For the τ parameter, see: Addison et al. (1984 ▶).

Experimental

Crystal data

[Cu2(C13H13N2O)2(NCS)2] M = 669.75 Monoclinic, a = 7.4747 (1) Å b = 16.9237 (3) Å c = 11.0714 (2) Å β = 91.1317 (18)° V = 1400.25 (4) Å3 Z = 2 Mo Kα radiation μ = 1.71 mm−1 T = 200 K 0.44 × 0.37 × 0.28 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.944, T max = 1.000 (expected range = 0.586–0.620) 18586 measured reflections 7024 independent reflections 4611 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.071 S = 0.89 7024 reflections 181 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.49 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809031742/kp2227sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031742/kp2227Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C13H13N2O)2(NCS)2]F(000) = 684
Mr = 669.75Dx = 1.588 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.4747 (1) ÅCell parameters from 7409 reflections
b = 16.9237 (3) Åθ = 4.5–37.4°
c = 11.0714 (2) ŵ = 1.71 mm1
β = 91.1317 (18)°T = 200 K
V = 1400.25 (4) Å3Chunk, dark green
Z = 20.44 × 0.37 × 0.28 mm
Oxford Diffraction Gemini R diffractometer7024 independent reflections
Radiation source: fine-focus sealed tube4611 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 10.5081 pixels mm-1θmax = 37.5°, θmin = 4.5°
φ and ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −28→25
Tmin = 0.944, Tmax = 1.000l = −18→12
18586 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H-atom parameters constrained
S = 0.89w = 1/[σ2(Fo2) + (0.037P)2] where P = (Fo2 + 2Fc2)/3
7024 reflections(Δ/σ)max = 0.004
181 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.49 e Å3
Experimental. CrysAlis RED, Oxford Diffraction Ltd., Version 1.171.32.15 (release 10-01-2008 CrysAlis171 .NET) (compiled Jan 10 2008,16:37:18) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu0.200074 (18)0.530744 (8)0.531057 (12)0.01989 (4)
S0.40414 (4)0.472939 (18)0.13944 (3)0.02856 (7)
O0.07568 (10)0.43052 (4)0.52958 (7)0.02117 (15)
N0.31981 (15)0.51404 (7)0.37642 (10)0.0315 (2)
N10.19612 (12)0.53813 (5)0.71214 (9)0.02082 (18)
H1A0.31460.54070.73900.025*
N20.27182 (13)0.64484 (6)0.55436 (9)0.02351 (19)
C0.35464 (15)0.49643 (7)0.27835 (11)0.0232 (2)
C10.13193 (14)0.37486 (6)0.60789 (10)0.0201 (2)
C20.15668 (15)0.29704 (7)0.56836 (11)0.0243 (2)
H2A0.12560.28320.48750.029*
C30.22630 (16)0.23993 (7)0.64630 (12)0.0286 (3)
H3A0.24150.18730.61850.034*
C40.27368 (17)0.25921 (8)0.76442 (12)0.0314 (3)
H4A0.32710.22080.81630.038*
C50.24208 (16)0.33520 (7)0.80592 (11)0.0271 (2)
H5A0.27220.34830.88730.033*
C60.16704 (15)0.39265 (7)0.73042 (10)0.0216 (2)
C70.11123 (16)0.47201 (6)0.77868 (11)0.0238 (2)
H7A−0.02050.47700.77160.029*
H7B0.14530.47560.86540.029*
C80.11526 (16)0.61569 (7)0.73720 (11)0.0253 (2)
H8A0.13730.63050.82270.030*
H8B−0.01560.61360.72200.030*
C90.19939 (15)0.67555 (6)0.65499 (11)0.0232 (2)
C100.20102 (17)0.75594 (7)0.67794 (12)0.0293 (3)
H10A0.14780.77660.74850.035*
C110.28194 (18)0.80584 (7)0.59583 (14)0.0351 (3)
H11A0.28360.86130.60910.042*
C120.35985 (17)0.77426 (7)0.49476 (13)0.0330 (3)
H12A0.41800.80750.43860.040*
C130.35215 (17)0.69330 (7)0.47618 (12)0.0287 (2)
H13A0.40510.67150.40630.034*
U11U22U33U12U13U23
Cu0.02292 (7)0.01935 (6)0.01741 (7)−0.00059 (5)0.00062 (5)−0.00060 (5)
S0.03068 (15)0.03244 (15)0.02262 (15)0.00118 (12)0.00194 (11)−0.00631 (12)
O0.0239 (4)0.0196 (3)0.0198 (4)0.0005 (3)−0.0051 (3)0.0021 (3)
N0.0326 (6)0.0367 (6)0.0256 (5)−0.0008 (4)0.0074 (4)−0.0037 (4)
N10.0204 (4)0.0215 (4)0.0205 (5)0.0007 (3)−0.0009 (3)−0.0009 (3)
N20.0214 (4)0.0230 (4)0.0260 (5)−0.0020 (3)−0.0025 (4)0.0003 (4)
C0.0199 (5)0.0226 (5)0.0271 (6)0.0003 (4)0.0010 (4)0.0003 (4)
C10.0180 (4)0.0210 (5)0.0215 (5)0.0000 (4)0.0004 (4)0.0033 (4)
C20.0268 (5)0.0218 (5)0.0243 (6)0.0014 (4)0.0018 (4)0.0008 (4)
C30.0298 (6)0.0207 (5)0.0356 (7)0.0043 (4)0.0055 (5)0.0048 (5)
C40.0310 (6)0.0296 (6)0.0336 (7)0.0067 (5)0.0014 (5)0.0138 (5)
C50.0282 (6)0.0311 (6)0.0219 (6)0.0002 (5)−0.0026 (4)0.0068 (5)
C60.0216 (5)0.0229 (5)0.0204 (5)−0.0007 (4)−0.0002 (4)0.0041 (4)
C70.0284 (5)0.0253 (5)0.0176 (5)−0.0001 (4)0.0024 (4)0.0015 (4)
C80.0280 (6)0.0230 (5)0.0249 (6)0.0006 (4)0.0024 (4)−0.0056 (4)
C90.0223 (5)0.0223 (5)0.0249 (6)0.0002 (4)−0.0045 (4)−0.0026 (4)
C100.0313 (6)0.0236 (5)0.0329 (7)0.0002 (5)−0.0042 (5)−0.0055 (5)
C110.0353 (7)0.0211 (5)0.0484 (9)−0.0039 (5)−0.0095 (6)−0.0004 (5)
C120.0302 (6)0.0279 (6)0.0405 (8)−0.0065 (5)−0.0043 (5)0.0071 (5)
C130.0270 (5)0.0294 (6)0.0297 (7)−0.0040 (5)0.0000 (5)0.0036 (5)
Cu—O1.9342 (8)C3—H3A0.9500
Cu—N1.9678 (11)C4—C51.3874 (18)
Cu—N12.0095 (10)C4—H4A0.9500
Cu—N22.0192 (10)C5—C61.3929 (16)
Cu—Oi2.2526 (8)C5—H5A0.9500
S—C1.6378 (12)C6—C71.5073 (16)
O—C11.3421 (13)C7—H7A0.9900
O—Cui2.2526 (8)C7—H7B0.9900
N—C1.1605 (16)C8—C91.5076 (16)
N1—C81.4737 (14)C8—H8A0.9900
N1—C71.4886 (14)C8—H8B0.9900
N1—H1A0.9300C9—C101.3840 (16)
N2—C131.3427 (15)C10—C111.3882 (19)
N2—C91.3521 (15)C10—H10A0.9500
C1—C21.4012 (15)C11—C121.379 (2)
C1—C61.4092 (16)C11—H11A0.9500
C2—C31.3900 (17)C12—C131.3865 (18)
C2—H2A0.9500C12—H12A0.9500
C3—C41.387 (2)C13—H13A0.9500
O—Cu—N95.37 (4)C5—C4—H4A120.4
O—Cu—N192.66 (3)C4—C5—C6121.16 (12)
N—Cu—N1153.23 (5)C4—C5—H5A119.4
O—Cu—N2165.03 (4)C6—C5—H5A119.4
N—Cu—N297.14 (4)C5—C6—C1119.59 (11)
N1—Cu—N279.76 (4)C5—C6—C7121.35 (11)
O—Cu—Oi79.39 (3)C1—C6—C7118.94 (10)
N—Cu—Oi102.22 (4)N1—C7—C6111.76 (9)
N1—Cu—Oi104.35 (3)N1—C7—H7A109.3
N2—Cu—Oi89.94 (3)C6—C7—H7A109.3
C1—O—Cu117.75 (7)N1—C7—H7B109.3
C1—O—Cui132.06 (7)C6—C7—H7B109.3
Cu—O—Cui100.61 (3)H7A—C7—H7B107.9
C—N—Cu164.84 (11)N1—C8—C9107.90 (9)
C8—N1—C7113.33 (9)N1—C8—H8A110.1
C8—N1—Cu104.92 (7)C9—C8—H8A110.1
C7—N1—Cu117.50 (7)N1—C8—H8B110.1
C8—N1—H1A106.8C9—C8—H8B110.1
C7—N1—H1A106.8H8A—C8—H8B108.4
Cu—N1—H1A106.8N2—C9—C10121.79 (11)
C13—N2—C9119.20 (10)N2—C9—C8114.69 (9)
C13—N2—Cu128.51 (9)C10—C9—C8123.50 (11)
C9—N2—Cu111.30 (7)C9—C10—C11118.70 (12)
N—C—S179.16 (12)C9—C10—H10A120.7
O—C1—C2119.97 (10)C11—C10—H10A120.7
O—C1—C6121.46 (10)C12—C11—C10119.47 (12)
C2—C1—C6118.57 (10)C12—C11—H11A120.3
C3—C2—C1120.65 (12)C10—C11—H11A120.3
C3—C2—H2A119.7C11—C12—C13119.10 (12)
C1—C2—H2A119.7C11—C12—H12A120.5
C4—C3—C2120.48 (12)C13—C12—H12A120.5
C4—C3—H3A119.8N2—C13—C12121.71 (12)
C2—C3—H3A119.8N2—C13—H13A119.1
C3—C4—C5119.23 (11)C12—C13—H13A119.1
C3—C4—H4A120.4
N—Cu—O—C1108.23 (8)Cui—O—C1—C6−92.44 (11)
N1—Cu—O—C1−46.20 (8)O—C1—C2—C3175.63 (10)
N2—Cu—O—C1−105.16 (15)C6—C1—C2—C3−4.46 (16)
Oi—Cu—O—C1−150.31 (9)C1—C2—C3—C4−0.47 (18)
N—Cu—O—Cui−101.46 (4)C2—C3—C4—C53.37 (18)
N1—Cu—O—Cui104.11 (4)C3—C4—C5—C6−1.27 (19)
N2—Cu—O—Cui45.15 (15)C4—C5—C6—C1−3.70 (18)
Oi—Cu—O—Cui0.0C4—C5—C6—C7172.27 (11)
O—Cu—N—C37.5 (4)O—C1—C6—C5−173.61 (10)
N1—Cu—N—C144.3 (4)C2—C1—C6—C56.48 (16)
N2—Cu—N—C−134.3 (4)O—C1—C6—C710.32 (15)
Oi—Cu—N—C−42.8 (4)C2—C1—C6—C7−169.59 (10)
O—Cu—N1—C8−126.33 (7)C8—N1—C7—C6166.99 (10)
N—Cu—N1—C8126.22 (10)Cu—N1—C7—C644.27 (12)
N2—Cu—N1—C840.68 (7)C5—C6—C7—N1125.30 (11)
Oi—Cu—N1—C8−46.61 (7)C1—C6—C7—N1−58.71 (14)
O—Cu—N1—C70.59 (8)C7—N1—C8—C9−174.09 (9)
N—Cu—N1—C7−106.86 (11)Cu—N1—C8—C9−44.65 (10)
N2—Cu—N1—C7167.59 (8)C13—N2—C9—C101.96 (17)
Oi—Cu—N1—C780.31 (8)Cu—N2—C9—C10−167.62 (9)
O—Cu—N2—C13−137.76 (14)C13—N2—C9—C8−179.11 (10)
N—Cu—N2—C138.72 (11)Cu—N2—C9—C811.31 (12)
N1—Cu—N2—C13161.81 (11)N1—C8—C9—N222.59 (14)
Oi—Cu—N2—C13−93.59 (10)N1—C8—C9—C10−158.50 (11)
O—Cu—N2—C930.60 (19)N2—C9—C10—C11−1.00 (19)
N—Cu—N2—C9177.08 (8)C8—C9—C10—C11−179.83 (12)
N1—Cu—N2—C9−29.83 (8)C9—C10—C11—C12−0.7 (2)
Oi—Cu—N2—C974.77 (8)C10—C11—C12—C131.4 (2)
Cu—N—C—S117 (8)C9—N2—C13—C12−1.24 (18)
Cu—O—C1—C2−133.51 (9)Cu—N2—C13—C12166.32 (10)
Cui—O—C1—C287.46 (12)C11—C12—C13—N2−0.4 (2)
Cu—O—C1—C646.58 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Sii0.932.483.3866 (10)164
Cu—O1.9342 (8)
Cu—N1.9678 (11)
Cu—N12.0095 (10)
Cu—N22.0192 (10)
Cu—Oi2.2526 (8)
O—Cu—N95.37 (4)
O—Cu—N192.66 (3)
N—Cu—N1153.23 (5)
O—Cu—N2165.03 (4)
N—Cu—N297.14 (4)
N1—Cu—N279.76 (4)
O—Cu—Oi79.39 (3)
N—Cu—Oi102.22 (4)
N1—Cu—Oi104.35 (3)
N2—Cu—Oi89.94 (3)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Sii0.932.483.3866 (10)164

Symmetry code: (ii) .

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