| Literature DB >> 21577463 |
Gervas E Assey1, Yohannes Tesema, Teshome Yisgedu, Yilma Gultneh, Ray J Butcher.
Abstract
The centrosymmetric binuclear complex, [Cu(2)(C(13)H(13)N(2)O)(2)(NCS)(2)], formed via phenolate oxygen bridges, involves the Cu(II) atoms in a distorted square-pyramidal coordination [τ = 0.197 (1)]. A Cu⋯Cu separation of 3.2281 (3) Å is observed. The in-plane Cu-O(phenolate) distance [1.9342 (8) Å] is shorter than the axial distance [2.252 (8) Å]. The Cu-N(amine) and Cu-N(py) distances are similar [2.0095 (10) and 2.0192 (10) Å, respectively]. The Cu-N(thio-cyanate) distance [1.9678 (11) Å] is in the range found for Cu-N distances in previously determined structures containing coordinated thio-cyanate anions. There is an inter-molecular hydrogen bond between the amine H atom and the S atom of a coordinated thio-cyanate anion.Entities:
Year: 2009 PMID: 21577463 PMCID: PMC2970067 DOI: 10.1107/S1600536809031742
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu2(C13H13N2O)2(NCS)2] | |
| Monoclinic, | Mo |
| Cell parameters from 7409 reflections | |
| θ = 4.5–37.4° | |
| µ = 1.71 mm−1 | |
| β = 91.1317 (18)° | |
| Chunk, dark green | |
| 0.44 × 0.37 × 0.28 mm |
| Oxford Diffraction Gemini R diffractometer | 7024 independent reflections |
| Radiation source: fine-focus sealed tube | 4611 reflections with |
| graphite | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 37.5°, θmin = 4.5° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 18586 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 7024 reflections | (Δ/σ)max = 0.004 |
| 181 parameters | Δρmax = 0.44 e Å−3 |
| 0 restraints | Δρmin = −0.49 e Å−3 |
| Experimental. CrysAlis RED, Oxford Diffraction Ltd., Version 1.171.32.15 (release 10-01-2008 CrysAlis171 .NET) (compiled Jan 10 2008,16:37:18) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu | 0.200074 (18) | 0.530744 (8) | 0.531057 (12) | 0.01989 (4) | |
| S | 0.40414 (4) | 0.472939 (18) | 0.13944 (3) | 0.02856 (7) | |
| O | 0.07568 (10) | 0.43052 (4) | 0.52958 (7) | 0.02117 (15) | |
| N | 0.31981 (15) | 0.51404 (7) | 0.37642 (10) | 0.0315 (2) | |
| N1 | 0.19612 (12) | 0.53813 (5) | 0.71214 (9) | 0.02082 (18) | |
| H1A | 0.3146 | 0.5407 | 0.7390 | 0.025* | |
| N2 | 0.27182 (13) | 0.64484 (6) | 0.55436 (9) | 0.02351 (19) | |
| C | 0.35464 (15) | 0.49643 (7) | 0.27835 (11) | 0.0232 (2) | |
| C1 | 0.13193 (14) | 0.37486 (6) | 0.60789 (10) | 0.0201 (2) | |
| C2 | 0.15668 (15) | 0.29704 (7) | 0.56836 (11) | 0.0243 (2) | |
| H2A | 0.1256 | 0.2832 | 0.4875 | 0.029* | |
| C3 | 0.22630 (16) | 0.23993 (7) | 0.64630 (12) | 0.0286 (3) | |
| H3A | 0.2415 | 0.1873 | 0.6185 | 0.034* | |
| C4 | 0.27368 (17) | 0.25921 (8) | 0.76442 (12) | 0.0314 (3) | |
| H4A | 0.3271 | 0.2208 | 0.8163 | 0.038* | |
| C5 | 0.24208 (16) | 0.33520 (7) | 0.80592 (11) | 0.0271 (2) | |
| H5A | 0.2722 | 0.3483 | 0.8873 | 0.033* | |
| C6 | 0.16704 (15) | 0.39265 (7) | 0.73042 (10) | 0.0216 (2) | |
| C7 | 0.11123 (16) | 0.47201 (6) | 0.77868 (11) | 0.0238 (2) | |
| H7A | −0.0205 | 0.4770 | 0.7716 | 0.029* | |
| H7B | 0.1453 | 0.4756 | 0.8654 | 0.029* | |
| C8 | 0.11526 (16) | 0.61569 (7) | 0.73720 (11) | 0.0253 (2) | |
| H8A | 0.1373 | 0.6305 | 0.8227 | 0.030* | |
| H8B | −0.0156 | 0.6136 | 0.7220 | 0.030* | |
| C9 | 0.19939 (15) | 0.67555 (6) | 0.65499 (11) | 0.0232 (2) | |
| C10 | 0.20102 (17) | 0.75594 (7) | 0.67794 (12) | 0.0293 (3) | |
| H10A | 0.1478 | 0.7766 | 0.7485 | 0.035* | |
| C11 | 0.28194 (18) | 0.80584 (7) | 0.59583 (14) | 0.0351 (3) | |
| H11A | 0.2836 | 0.8613 | 0.6091 | 0.042* | |
| C12 | 0.35985 (17) | 0.77426 (7) | 0.49476 (13) | 0.0330 (3) | |
| H12A | 0.4180 | 0.8075 | 0.4386 | 0.040* | |
| C13 | 0.35215 (17) | 0.69330 (7) | 0.47618 (12) | 0.0287 (2) | |
| H13A | 0.4051 | 0.6715 | 0.4063 | 0.034* |
| Cu | 0.02292 (7) | 0.01935 (6) | 0.01741 (7) | −0.00059 (5) | 0.00062 (5) | −0.00060 (5) |
| S | 0.03068 (15) | 0.03244 (15) | 0.02262 (15) | 0.00118 (12) | 0.00194 (11) | −0.00631 (12) |
| O | 0.0239 (4) | 0.0196 (3) | 0.0198 (4) | 0.0005 (3) | −0.0051 (3) | 0.0021 (3) |
| N | 0.0326 (6) | 0.0367 (6) | 0.0256 (5) | −0.0008 (4) | 0.0074 (4) | −0.0037 (4) |
| N1 | 0.0204 (4) | 0.0215 (4) | 0.0205 (5) | 0.0007 (3) | −0.0009 (3) | −0.0009 (3) |
| N2 | 0.0214 (4) | 0.0230 (4) | 0.0260 (5) | −0.0020 (3) | −0.0025 (4) | 0.0003 (4) |
| C | 0.0199 (5) | 0.0226 (5) | 0.0271 (6) | 0.0003 (4) | 0.0010 (4) | 0.0003 (4) |
| C1 | 0.0180 (4) | 0.0210 (5) | 0.0215 (5) | 0.0000 (4) | 0.0004 (4) | 0.0033 (4) |
| C2 | 0.0268 (5) | 0.0218 (5) | 0.0243 (6) | 0.0014 (4) | 0.0018 (4) | 0.0008 (4) |
| C3 | 0.0298 (6) | 0.0207 (5) | 0.0356 (7) | 0.0043 (4) | 0.0055 (5) | 0.0048 (5) |
| C4 | 0.0310 (6) | 0.0296 (6) | 0.0336 (7) | 0.0067 (5) | 0.0014 (5) | 0.0138 (5) |
| C5 | 0.0282 (6) | 0.0311 (6) | 0.0219 (6) | 0.0002 (5) | −0.0026 (4) | 0.0068 (5) |
| C6 | 0.0216 (5) | 0.0229 (5) | 0.0204 (5) | −0.0007 (4) | −0.0002 (4) | 0.0041 (4) |
| C7 | 0.0284 (5) | 0.0253 (5) | 0.0176 (5) | −0.0001 (4) | 0.0024 (4) | 0.0015 (4) |
| C8 | 0.0280 (6) | 0.0230 (5) | 0.0249 (6) | 0.0006 (4) | 0.0024 (4) | −0.0056 (4) |
| C9 | 0.0223 (5) | 0.0223 (5) | 0.0249 (6) | 0.0002 (4) | −0.0045 (4) | −0.0026 (4) |
| C10 | 0.0313 (6) | 0.0236 (5) | 0.0329 (7) | 0.0002 (5) | −0.0042 (5) | −0.0055 (5) |
| C11 | 0.0353 (7) | 0.0211 (5) | 0.0484 (9) | −0.0039 (5) | −0.0095 (6) | −0.0004 (5) |
| C12 | 0.0302 (6) | 0.0279 (6) | 0.0405 (8) | −0.0065 (5) | −0.0043 (5) | 0.0071 (5) |
| C13 | 0.0270 (5) | 0.0294 (6) | 0.0297 (7) | −0.0040 (5) | 0.0000 (5) | 0.0036 (5) |
| Cu—O | 1.9342 (8) | C3—H3A | 0.9500 |
| Cu—N | 1.9678 (11) | C4—C5 | 1.3874 (18) |
| Cu—N1 | 2.0095 (10) | C4—H4A | 0.9500 |
| Cu—N2 | 2.0192 (10) | C5—C6 | 1.3929 (16) |
| Cu—Oi | 2.2526 (8) | C5—H5A | 0.9500 |
| S—C | 1.6378 (12) | C6—C7 | 1.5073 (16) |
| O—C1 | 1.3421 (13) | C7—H7A | 0.9900 |
| O—Cui | 2.2526 (8) | C7—H7B | 0.9900 |
| N—C | 1.1605 (16) | C8—C9 | 1.5076 (16) |
| N1—C8 | 1.4737 (14) | C8—H8A | 0.9900 |
| N1—C7 | 1.4886 (14) | C8—H8B | 0.9900 |
| N1—H1A | 0.9300 | C9—C10 | 1.3840 (16) |
| N2—C13 | 1.3427 (15) | C10—C11 | 1.3882 (19) |
| N2—C9 | 1.3521 (15) | C10—H10A | 0.9500 |
| C1—C2 | 1.4012 (15) | C11—C12 | 1.379 (2) |
| C1—C6 | 1.4092 (16) | C11—H11A | 0.9500 |
| C2—C3 | 1.3900 (17) | C12—C13 | 1.3865 (18) |
| C2—H2A | 0.9500 | C12—H12A | 0.9500 |
| C3—C4 | 1.387 (2) | C13—H13A | 0.9500 |
| O—Cu—N | 95.37 (4) | C5—C4—H4A | 120.4 |
| O—Cu—N1 | 92.66 (3) | C4—C5—C6 | 121.16 (12) |
| N—Cu—N1 | 153.23 (5) | C4—C5—H5A | 119.4 |
| O—Cu—N2 | 165.03 (4) | C6—C5—H5A | 119.4 |
| N—Cu—N2 | 97.14 (4) | C5—C6—C1 | 119.59 (11) |
| N1—Cu—N2 | 79.76 (4) | C5—C6—C7 | 121.35 (11) |
| O—Cu—Oi | 79.39 (3) | C1—C6—C7 | 118.94 (10) |
| N—Cu—Oi | 102.22 (4) | N1—C7—C6 | 111.76 (9) |
| N1—Cu—Oi | 104.35 (3) | N1—C7—H7A | 109.3 |
| N2—Cu—Oi | 89.94 (3) | C6—C7—H7A | 109.3 |
| C1—O—Cu | 117.75 (7) | N1—C7—H7B | 109.3 |
| C1—O—Cui | 132.06 (7) | C6—C7—H7B | 109.3 |
| Cu—O—Cui | 100.61 (3) | H7A—C7—H7B | 107.9 |
| C—N—Cu | 164.84 (11) | N1—C8—C9 | 107.90 (9) |
| C8—N1—C7 | 113.33 (9) | N1—C8—H8A | 110.1 |
| C8—N1—Cu | 104.92 (7) | C9—C8—H8A | 110.1 |
| C7—N1—Cu | 117.50 (7) | N1—C8—H8B | 110.1 |
| C8—N1—H1A | 106.8 | C9—C8—H8B | 110.1 |
| C7—N1—H1A | 106.8 | H8A—C8—H8B | 108.4 |
| Cu—N1—H1A | 106.8 | N2—C9—C10 | 121.79 (11) |
| C13—N2—C9 | 119.20 (10) | N2—C9—C8 | 114.69 (9) |
| C13—N2—Cu | 128.51 (9) | C10—C9—C8 | 123.50 (11) |
| C9—N2—Cu | 111.30 (7) | C9—C10—C11 | 118.70 (12) |
| N—C—S | 179.16 (12) | C9—C10—H10A | 120.7 |
| O—C1—C2 | 119.97 (10) | C11—C10—H10A | 120.7 |
| O—C1—C6 | 121.46 (10) | C12—C11—C10 | 119.47 (12) |
| C2—C1—C6 | 118.57 (10) | C12—C11—H11A | 120.3 |
| C3—C2—C1 | 120.65 (12) | C10—C11—H11A | 120.3 |
| C3—C2—H2A | 119.7 | C11—C12—C13 | 119.10 (12) |
| C1—C2—H2A | 119.7 | C11—C12—H12A | 120.5 |
| C4—C3—C2 | 120.48 (12) | C13—C12—H12A | 120.5 |
| C4—C3—H3A | 119.8 | N2—C13—C12 | 121.71 (12) |
| C2—C3—H3A | 119.8 | N2—C13—H13A | 119.1 |
| C3—C4—C5 | 119.23 (11) | C12—C13—H13A | 119.1 |
| C3—C4—H4A | 120.4 | ||
| N—Cu—O—C1 | 108.23 (8) | Cui—O—C1—C6 | −92.44 (11) |
| N1—Cu—O—C1 | −46.20 (8) | O—C1—C2—C3 | 175.63 (10) |
| N2—Cu—O—C1 | −105.16 (15) | C6—C1—C2—C3 | −4.46 (16) |
| Oi—Cu—O—C1 | −150.31 (9) | C1—C2—C3—C4 | −0.47 (18) |
| N—Cu—O—Cui | −101.46 (4) | C2—C3—C4—C5 | 3.37 (18) |
| N1—Cu—O—Cui | 104.11 (4) | C3—C4—C5—C6 | −1.27 (19) |
| N2—Cu—O—Cui | 45.15 (15) | C4—C5—C6—C1 | −3.70 (18) |
| Oi—Cu—O—Cui | 0.0 | C4—C5—C6—C7 | 172.27 (11) |
| O—Cu—N—C | 37.5 (4) | O—C1—C6—C5 | −173.61 (10) |
| N1—Cu—N—C | 144.3 (4) | C2—C1—C6—C5 | 6.48 (16) |
| N2—Cu—N—C | −134.3 (4) | O—C1—C6—C7 | 10.32 (15) |
| Oi—Cu—N—C | −42.8 (4) | C2—C1—C6—C7 | −169.59 (10) |
| O—Cu—N1—C8 | −126.33 (7) | C8—N1—C7—C6 | 166.99 (10) |
| N—Cu—N1—C8 | 126.22 (10) | Cu—N1—C7—C6 | 44.27 (12) |
| N2—Cu—N1—C8 | 40.68 (7) | C5—C6—C7—N1 | 125.30 (11) |
| Oi—Cu—N1—C8 | −46.61 (7) | C1—C6—C7—N1 | −58.71 (14) |
| O—Cu—N1—C7 | 0.59 (8) | C7—N1—C8—C9 | −174.09 (9) |
| N—Cu—N1—C7 | −106.86 (11) | Cu—N1—C8—C9 | −44.65 (10) |
| N2—Cu—N1—C7 | 167.59 (8) | C13—N2—C9—C10 | 1.96 (17) |
| Oi—Cu—N1—C7 | 80.31 (8) | Cu—N2—C9—C10 | −167.62 (9) |
| O—Cu—N2—C13 | −137.76 (14) | C13—N2—C9—C8 | −179.11 (10) |
| N—Cu—N2—C13 | 8.72 (11) | Cu—N2—C9—C8 | 11.31 (12) |
| N1—Cu—N2—C13 | 161.81 (11) | N1—C8—C9—N2 | 22.59 (14) |
| Oi—Cu—N2—C13 | −93.59 (10) | N1—C8—C9—C10 | −158.50 (11) |
| O—Cu—N2—C9 | 30.60 (19) | N2—C9—C10—C11 | −1.00 (19) |
| N—Cu—N2—C9 | 177.08 (8) | C8—C9—C10—C11 | −179.83 (12) |
| N1—Cu—N2—C9 | −29.83 (8) | C9—C10—C11—C12 | −0.7 (2) |
| Oi—Cu—N2—C9 | 74.77 (8) | C10—C11—C12—C13 | 1.4 (2) |
| Cu—N—C—S | 117 (8) | C9—N2—C13—C12 | −1.24 (18) |
| Cu—O—C1—C2 | −133.51 (9) | Cu—N2—C13—C12 | 166.32 (10) |
| Cui—O—C1—C2 | 87.46 (12) | C11—C12—C13—N2 | −0.4 (2) |
| Cu—O—C1—C6 | 46.58 (12) |
| H··· | ||||
| N1—H1A···Sii | 0.93 | 2.48 | 3.3866 (10) | 164 |
| Cu—O | 1.9342 (8) |
| Cu—N | 1.9678 (11) |
| Cu—N1 | 2.0095 (10) |
| Cu—N2 | 2.0192 (10) |
| Cu—Oi | 2.2526 (8) |
| O—Cu—N | 95.37 (4) |
| O—Cu—N1 | 92.66 (3) |
| N—Cu—N1 | 153.23 (5) |
| O—Cu—N2 | 165.03 (4) |
| N—Cu—N2 | 97.14 (4) |
| N1—Cu—N2 | 79.76 (4) |
| O—Cu—Oi | 79.39 (3) |
| N—Cu—Oi | 102.22 (4) |
| N1—Cu—Oi | 104.35 (3) |
| N2—Cu—Oi | 89.94 (3) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.93 | 2.48 | 3.3866 (10) | 164 |
Symmetry code: (ii) .