| Literature DB >> 21577460 |
Suwen Wang, Tianyu Yang, Zhongfang Li, Xianjin Yu.
Abstract
In the title compound, [Pd(C(7)H(7)O(3)S)(2)(C(13)H(14)N(2))(2)](n), the metal ion, located on a twofold rotation axis, exhibits a slightly distorted octa-hedral coordination environment, with bond angles that deviate by at most 2.2° from an ideal geometry, completed by two O atoms from two deprotonated p-toluene-sulfonic acid ligands and four N atoms from four 1,3-di-4-pyridylpropane ligands. One of the sulfonate O atoms is disordered over two positions [ratio 0.70 (5):0.30 (5)].Entities:
Year: 2009 PMID: 21577460 PMCID: PMC2969940 DOI: 10.1107/S1600536809032760
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Pd(C7H7O3S)2(C13H14N2)2] | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2a 2bc | Cell parameters from 7795 reflections |
| θ = 2.4–28.2° | |
| µ = 0.64 mm−1 | |
| Block, colorless | |
| 0.12 × 0.08 × 0.01 mm |
| Bruker APEXII CCD area-detector diffractometer | 3374 independent reflections |
| Radiation source: fine-focus sealed tube | 2761 reflections with |
| graphite | |
| φ and ω scans | θmax = 25°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 18799 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters not refined | |
| 3374 reflections | (Δ/σ)max = 0.047 |
| 251 parameters | Δρmax = 0.61 e Å−3 |
| 0 restraints | Δρmin = −0.67 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Pd1 | 0.405803 (9) | 0.25 | 0.25 | 0.02547 (12) | |
| S1 | 0.38959 (4) | 0.12445 (5) | 0.56888 (8) | 0.0569 (2) | |
| O1A | 0.453 (3) | 0.1210 (9) | 0.624 (7) | 0.110 (16) | 0.30 (5) |
| O1B | 0.4230 (9) | 0.1297 (6) | 0.6913 (16) | 0.095 (4) | 0.70 (5) |
| O2 | 0.40587 (9) | 0.15978 (13) | 0.4355 (3) | 0.0623 (6) | |
| O3 | 0.33358 (13) | 0.15336 (15) | 0.6086 (3) | 0.1029 (11) | |
| N1 | 0.47636 (8) | 0.18031 (12) | 0.1367 (2) | 0.0352 (5) | |
| N2 | 0.33394 (8) | 0.17892 (12) | 0.1424 (3) | 0.0383 (5) | |
| C1 | 0.3609 (3) | −0.2217 (3) | 0.4820 (7) | 0.144 (2) | |
| H1A | 0.3825 | −0.2462 | 0.5559 | 0.216* | |
| H1B | 0.3744 | −0.2378 | 0.3899 | 0.216* | |
| H1C | 0.3221 | −0.2357 | 0.4918 | 0.216* | |
| C2 | 0.3669 (2) | −0.1344 (2) | 0.4956 (4) | 0.0741 (11) | |
| C3 | 0.32559 (17) | −0.0900 (2) | 0.5550 (4) | 0.0739 (11) | |
| H3 | 0.2924 | −0.1132 | 0.5847 | 0.089* | |
| C4 | 0.33176 (13) | −0.01173 (19) | 0.5722 (3) | 0.0561 (8) | |
| H4 | 0.3027 | 0.0166 | 0.6125 | 0.067* | |
| C5 | 0.37985 (12) | 0.02464 (16) | 0.5309 (3) | 0.0405 (6) | |
| C6 | 0.42192 (14) | −0.0190 (2) | 0.4681 (3) | 0.0520 (8) | |
| H6 | 0.4549 | 0.0043 | 0.4371 | 0.062* | |
| C7 | 0.41461 (17) | −0.0978 (2) | 0.4516 (4) | 0.0663 (10) | |
| H7 | 0.4431 | −0.1264 | 0.4093 | 0.08* | |
| C8 | 0.48162 (10) | 0.16862 (16) | −0.0055 (3) | 0.0386 (6) | |
| H8 | 0.4599 | 0.1982 | −0.067 | 0.046* | |
| C9 | 0.51733 (10) | 0.11541 (16) | −0.0644 (3) | 0.0389 (6) | |
| H9 | 0.519 | 0.1092 | −0.1632 | 0.047* | |
| C10 | 0.50992 (12) | 0.13828 (18) | 0.2226 (3) | 0.0408 (7) | |
| H10 | 0.5079 | 0.1461 | 0.321 | 0.049* | |
| C11 | 0.54674 (10) | 0.08471 (16) | 0.1715 (3) | 0.0410 (7) | |
| H11 | 0.5691 | 0.0572 | 0.2351 | 0.049* | |
| C12 | 0.55099 (10) | 0.07100 (14) | 0.0245 (3) | 0.0339 (6) | |
| C13 | 0.58962 (10) | 0.01068 (17) | −0.0364 (4) | 0.0442 (7) | |
| H13A | 0.5701 | −0.0172 | −0.1113 | 0.053* | |
| H13B | 0.5993 | −0.0256 | 0.0385 | 0.053* | |
| C14 | 0.64305 (10) | 0.04495 (15) | −0.0976 (3) | 0.0398 (6) | |
| H14A | 0.662 | 0.0064 | −0.1547 | 0.048* | |
| H14B | 0.6332 | 0.0871 | −0.1605 | 0.048* | |
| C15 | 0.32321 (11) | 0.17269 (16) | 0.0008 (3) | 0.0402 (6) | |
| H15 | 0.3494 | 0.1923 | −0.0634 | 0.048* | |
| C16 | 0.29563 (12) | 0.15034 (19) | 0.2325 (3) | 0.0423 (7) | |
| H16 | 0.3019 | 0.1544 | 0.3306 | 0.051* | |
| C17 | 0.24731 (11) | 0.11523 (15) | 0.1860 (3) | 0.0413 (6) | |
| H17 | 0.2221 | 0.0952 | 0.2523 | 0.05* | |
| C18 | 0.27591 (11) | 0.13906 (16) | −0.0530 (3) | 0.0419 (7) | |
| H18 | 0.2705 | 0.136 | −0.1516 | 0.05* | |
| C19 | 0.23581 (10) | 0.10944 (14) | 0.0402 (3) | 0.0341 (6) | |
| C20 | 0.18311 (10) | 0.07391 (16) | −0.0165 (3) | 0.0380 (6) | |
| H20A | 0.1932 | 0.0314 | −0.0783 | 0.046* | |
| H20B | 0.1637 | 0.1115 | −0.0748 | 0.046* |
| Pd1 | 0.01639 (17) | 0.02857 (17) | 0.03145 (18) | 0 | 0 | −0.00186 (10) |
| S1 | 0.0873 (6) | 0.0455 (4) | 0.0379 (4) | −0.0102 (4) | −0.0087 (4) | 0.0075 (3) |
| O1A | 0.17 (3) | 0.066 (7) | 0.09 (3) | −0.003 (9) | −0.09 (2) | 0.001 (8) |
| O1B | 0.157 (9) | 0.075 (3) | 0.051 (5) | −0.031 (4) | −0.053 (6) | −0.004 (4) |
| O2 | 0.0648 (14) | 0.0570 (14) | 0.0652 (15) | −0.0050 (10) | 0.0055 (11) | 0.0284 (12) |
| O3 | 0.131 (3) | 0.0669 (17) | 0.111 (2) | 0.0160 (17) | 0.070 (2) | −0.0008 (16) |
| N1 | 0.0283 (11) | 0.0425 (12) | 0.0347 (12) | 0.0029 (9) | −0.0016 (9) | −0.0028 (10) |
| N2 | 0.0273 (11) | 0.0437 (13) | 0.0438 (14) | −0.0045 (9) | 0.0016 (10) | −0.0048 (11) |
| C1 | 0.238 (7) | 0.055 (3) | 0.139 (5) | −0.016 (4) | −0.024 (5) | −0.015 (3) |
| C2 | 0.112 (3) | 0.050 (2) | 0.060 (2) | −0.011 (2) | −0.016 (2) | 0.0012 (18) |
| C3 | 0.074 (2) | 0.067 (2) | 0.081 (3) | −0.027 (2) | −0.007 (2) | 0.012 (2) |
| C4 | 0.0464 (17) | 0.061 (2) | 0.061 (2) | −0.0019 (15) | 0.0018 (15) | 0.0076 (17) |
| C5 | 0.0437 (16) | 0.0474 (16) | 0.0304 (14) | 0.0013 (13) | −0.0044 (12) | 0.0069 (12) |
| C6 | 0.0503 (17) | 0.070 (2) | 0.0361 (16) | 0.0020 (16) | −0.0016 (14) | 0.0063 (15) |
| C7 | 0.092 (3) | 0.065 (2) | 0.0421 (19) | 0.029 (2) | −0.0071 (19) | −0.0055 (17) |
| C8 | 0.0314 (14) | 0.0502 (16) | 0.0342 (14) | 0.0048 (12) | 0.0004 (12) | 0.0043 (12) |
| C9 | 0.0332 (14) | 0.0546 (16) | 0.0291 (14) | 0.0025 (12) | 0.0021 (11) | −0.0025 (12) |
| C10 | 0.0342 (15) | 0.0593 (18) | 0.0290 (14) | 0.0092 (14) | −0.0006 (11) | −0.0013 (12) |
| C11 | 0.0300 (14) | 0.0534 (17) | 0.0397 (17) | 0.0118 (12) | −0.0016 (12) | 0.0052 (13) |
| C12 | 0.0199 (12) | 0.0379 (14) | 0.0438 (16) | −0.0053 (10) | 0.0046 (11) | −0.0043 (12) |
| C13 | 0.0272 (14) | 0.0428 (16) | 0.063 (2) | −0.0035 (11) | 0.0099 (13) | −0.0097 (15) |
| C14 | 0.0245 (13) | 0.0457 (16) | 0.0491 (17) | −0.0017 (11) | 0.0087 (12) | −0.0088 (13) |
| C15 | 0.0341 (14) | 0.0463 (16) | 0.0402 (16) | −0.0064 (12) | 0.0046 (12) | −0.0023 (13) |
| C16 | 0.0328 (15) | 0.0582 (19) | 0.0359 (16) | −0.0070 (14) | −0.0038 (12) | 0.0000 (13) |
| C17 | 0.0299 (14) | 0.0512 (17) | 0.0430 (16) | −0.0085 (12) | −0.0003 (13) | 0.0016 (14) |
| C18 | 0.0399 (15) | 0.0504 (17) | 0.0353 (15) | −0.0053 (13) | −0.0007 (12) | −0.0038 (13) |
| C19 | 0.0298 (13) | 0.0329 (13) | 0.0395 (15) | 0.0017 (10) | −0.0011 (11) | −0.0022 (11) |
| C20 | 0.0276 (14) | 0.0416 (15) | 0.0448 (16) | −0.0018 (11) | −0.0062 (12) | −0.0023 (13) |
| Pd1—N1i | 2.328 (2) | C7—H7 | 0.93 |
| Pd1—N1 | 2.328 (2) | C8—C9 | 1.373 (4) |
| Pd1—O2 | 2.339 (2) | C8—H8 | 0.93 |
| Pd1—O2i | 2.339 (2) | C9—C12 | 1.389 (4) |
| Pd1—N2 | 2.340 (2) | C9—H9 | 0.93 |
| Pd1—N2i | 2.340 (2) | C10—C11 | 1.367 (4) |
| S1—O1B | 1.396 (6) | C10—H10 | 0.93 |
| S1—O2 | 1.442 (2) | C11—C12 | 1.397 (4) |
| S1—O3 | 1.473 (3) | C11—H11 | 0.93 |
| S1—O1A | 1.59 (4) | C12—C13 | 1.508 (4) |
| S1—C5 | 1.791 (3) | C13—C14 | 1.517 (3) |
| N1—C8 | 1.348 (3) | C13—H13A | 0.97 |
| N1—C10 | 1.349 (3) | C13—H13B | 0.97 |
| N2—C16 | 1.338 (3) | C14—C20ii | 1.516 (4) |
| N2—C15 | 1.350 (4) | C14—H14A | 0.97 |
| C1—C2 | 1.535 (5) | C14—H14B | 0.97 |
| C1—H1A | 0.96 | C15—C18 | 1.366 (4) |
| C1—H1B | 0.96 | C15—H15 | 0.93 |
| C1—H1C | 0.96 | C16—C17 | 1.374 (4) |
| C2—C7 | 1.367 (5) | C16—H16 | 0.93 |
| C2—C3 | 1.369 (6) | C17—C19 | 1.392 (4) |
| C3—C4 | 1.382 (5) | C17—H17 | 0.93 |
| C3—H3 | 0.93 | C18—C19 | 1.392 (4) |
| C4—C5 | 1.365 (4) | C18—H18 | 0.93 |
| C4—H4 | 0.93 | C19—C20 | 1.496 (3) |
| C5—C6 | 1.388 (4) | C20—C14iii | 1.516 (4) |
| C6—C7 | 1.394 (5) | C20—H20A | 0.97 |
| C6—H6 | 0.93 | C20—H20B | 0.97 |
| N1i—Pd1—N1 | 87.57 (10) | C2—C7—C6 | 122.1 (3) |
| N1i—Pd1—O2 | 90.82 (8) | C2—C7—H7 | 119 |
| N1—Pd1—O2 | 89.13 (8) | C6—C7—H7 | 119 |
| N1i—Pd1—O2i | 89.13 (8) | N1—C8—C9 | 123.6 (3) |
| N1—Pd1—O2i | 90.82 (8) | N1—C8—H8 | 118.2 |
| O2—Pd1—O2i | 179.93 (11) | C9—C8—H8 | 118.2 |
| N1i—Pd1—N2 | 178.41 (7) | C8—C9—C12 | 119.7 (3) |
| N1—Pd1—N2 | 93.24 (8) | C8—C9—H9 | 120.2 |
| O2—Pd1—N2 | 87.83 (8) | C12—C9—H9 | 120.2 |
| O2i—Pd1—N2 | 92.23 (8) | N1—C10—C11 | 123.0 (2) |
| N1i—Pd1—N2i | 93.24 (8) | N1—C10—H10 | 118.5 |
| N1—Pd1—N2i | 178.41 (7) | C11—C10—H10 | 118.5 |
| O2—Pd1—N2i | 92.23 (8) | C10—C11—C12 | 120.4 (2) |
| O2i—Pd1—N2i | 87.83 (8) | C10—C11—H11 | 119.8 |
| N2—Pd1—N2i | 85.97 (10) | C12—C11—H11 | 119.8 |
| O1B—S1—O2 | 121.7 (8) | C9—C12—C11 | 116.7 (2) |
| O1B—S1—O3 | 106.7 (11) | C9—C12—C13 | 121.1 (3) |
| O2—S1—O3 | 108.33 (16) | C11—C12—C13 | 122.2 (3) |
| O2—S1—O1A | 92 (2) | C12—C13—C14 | 112.3 (2) |
| O3—S1—O1A | 142 (2) | C12—C13—H13A | 109.2 |
| O1B—S1—C5 | 107.4 (4) | C14—C13—H13A | 109.2 |
| O2—S1—C5 | 106.20 (14) | C12—C13—H13B | 109.2 |
| O3—S1—C5 | 105.37 (15) | C14—C13—H13B | 109.2 |
| O1A—S1—C5 | 98.6 (8) | H13A—C13—H13B | 107.9 |
| S1—O2—Pd1 | 157.82 (15) | C20ii—C14—C13 | 113.3 (2) |
| C8—N1—C10 | 116.6 (2) | C20ii—C14—H14A | 108.9 |
| C8—N1—Pd1 | 126.37 (17) | C13—C14—H14A | 108.9 |
| C10—N1—Pd1 | 116.20 (17) | C20ii—C14—H14B | 108.9 |
| C16—N2—C15 | 117.2 (2) | C13—C14—H14B | 108.9 |
| C16—N2—Pd1 | 115.22 (18) | H14A—C14—H14B | 107.7 |
| C15—N2—Pd1 | 126.96 (18) | N2—C15—C18 | 123.4 (3) |
| C2—C1—H1A | 109.5 | N2—C15—H15 | 118.3 |
| C2—C1—H1B | 109.5 | C18—C15—H15 | 118.3 |
| H1A—C1—H1B | 109.5 | N2—C16—C17 | 122.6 (3) |
| C2—C1—H1C | 109.5 | N2—C16—H16 | 118.7 |
| H1A—C1—H1C | 109.5 | C17—C16—H16 | 118.7 |
| H1B—C1—H1C | 109.5 | C16—C17—C19 | 120.4 (3) |
| C7—C2—C3 | 117.1 (3) | C16—C17—H17 | 119.8 |
| C7—C2—C1 | 121.0 (5) | C19—C17—H17 | 119.8 |
| C3—C2—C1 | 121.9 (5) | C15—C18—C19 | 119.7 (3) |
| C2—C3—C4 | 121.9 (3) | C15—C18—H18 | 120.2 |
| C2—C3—H3 | 119 | C19—C18—H18 | 120.2 |
| C4—C3—H3 | 119 | C17—C19—C18 | 116.7 (2) |
| C5—C4—C3 | 121.0 (3) | C17—C19—C20 | 122.7 (2) |
| C5—C4—H4 | 119.5 | C18—C19—C20 | 120.5 (2) |
| C3—C4—H4 | 119.5 | C19—C20—C14iii | 114.7 (2) |
| C4—C5—C6 | 118.1 (3) | C19—C20—H20A | 108.6 |
| C4—C5—S1 | 120.3 (2) | C14iii—C20—H20A | 108.6 |
| C6—C5—S1 | 121.5 (2) | C19—C20—H20B | 108.6 |
| C5—C6—C7 | 119.8 (3) | C14iii—C20—H20B | 108.6 |
| C5—C6—H6 | 120.1 | H20A—C20—H20B | 107.6 |
| C7—C6—H6 | 120.1 | ||
| O1B—S1—O2—Pd1 | −103.6 (11) | O3—S1—C5—C6 | 169.7 (2) |
| O3—S1—O2—Pd1 | 20.5 (5) | O1A—S1—C5—C6 | −40 (3) |
| O1A—S1—O2—Pd1 | −127.1 (14) | C4—C5—C6—C7 | −1.3 (4) |
| C5—S1—O2—Pd1 | 133.3 (4) | S1—C5—C6—C7 | 174.4 (2) |
| N1i—Pd1—O2—S1 | 91.8 (4) | C3—C2—C7—C6 | 1.1 (5) |
| N1—Pd1—O2—S1 | 179.3 (4) | C1—C2—C7—C6 | −177.4 (4) |
| N2—Pd1—O2—S1 | −87.4 (4) | C5—C6—C7—C2 | 0.0 (5) |
| N2i—Pd1—O2—S1 | −1.5 (4) | C10—N1—C8—C9 | 2.2 (4) |
| N1i—Pd1—N1—C8 | −127.0 (2) | Pd1—N1—C8—C9 | −166.94 (19) |
| O2—Pd1—N1—C8 | 142.2 (2) | N1—C8—C9—C12 | −0.9 (4) |
| O2i—Pd1—N1—C8 | −37.9 (2) | C8—N1—C10—C11 | −1.7 (4) |
| O2—Pd1—N1—C10 | −27.1 (2) | Pd1—N1—C10—C11 | 168.6 (2) |
| O2i—Pd1—N1—C10 | 152.9 (2) | N1—C10—C11—C12 | −0.2 (4) |
| N2—Pd1—N1—C10 | −114.83 (19) | C8—C9—C12—C11 | −1.0 (4) |
| N1—Pd1—N2—C16 | 128.3 (2) | C8—C9—C12—C13 | 178.5 (2) |
| O2i—Pd1—N2—C16 | −140.8 (2) | C10—C11—C12—C9 | 1.5 (4) |
| N2i—Pd1—N2—C16 | −53.09 (18) | C10—C11—C12—C13 | −178.0 (3) |
| N1—Pd1—N2—C15 | −61.2 (2) | C9—C12—C13—C14 | 78.7 (3) |
| O2—Pd1—N2—C15 | −150.2 (2) | C11—C12—C13—C14 | −101.9 (3) |
| O2i—Pd1—N2—C15 | 29.7 (2) | C12—C13—C14—C20ii | 72.0 (3) |
| N2i—Pd1—N2—C15 | 117.4 (2) | C16—N2—C15—C18 | −0.1 (4) |
| C7—C2—C3—C4 | −0.9 (6) | Pd1—N2—C15—C18 | −170.4 (2) |
| C1—C2—C3—C4 | 177.5 (4) | C15—N2—C16—C17 | 0.6 (4) |
| C2—C3—C4—C5 | −0.4 (6) | Pd1—N2—C16—C17 | 172.0 (2) |
| C3—C4—C5—C6 | 1.5 (5) | N2—C16—C17—C19 | −1.3 (5) |
| C3—C4—C5—S1 | −174.3 (3) | N2—C15—C18—C19 | 0.3 (4) |
| O1B—S1—C5—C4 | 98.9 (12) | C16—C17—C19—C18 | 1.4 (4) |
| O2—S1—C5—C4 | −129.5 (2) | C16—C17—C19—C20 | −178.2 (3) |
| O3—S1—C5—C4 | −14.7 (3) | C15—C18—C19—C17 | −0.9 (4) |
| O1A—S1—C5—C4 | 136 (3) | C15—C18—C19—C20 | 178.6 (2) |
| O1B—S1—C5—C6 | −76.7 (12) | C17—C19—C20—C14iii | 0.2 (4) |
| O2—S1—C5—C6 | 54.9 (3) | C18—C19—C20—C14iii | −179.3 (2) |