Literature DB >> 21577425

catena-Poly[[[triaqua-(4,5-diaza-fluorene-9-one)cadmium]-μ-benzene-1,3-dicarboxyl-ato] dihydrate].

Xiao-Ping Li, Wei Fang, Ze-Min Mei, Xiang-Jun Jin, Wen-Liang Qi.   

Abstract

In the title compound, {[Cd(C(8)H(4)O(4))(C(11)H(6)N(2)O)(H(2)O)(3)]·2H(2)O}(n), the Cd(II) atom is seven-coordinated by two N atoms from the phenanthroline-derived 4,5-diaza-fluorene-9-one ligand, two O atoms from one bidentate benzene-1,3-dicarboxyl-ate ligand and three O atoms from the three water mol-ecules in a distorted penta-gonal-bipyramidal arrangement. Moreover, there are two dissociative water mol-ecules in each unit. Neighbouring units inter-act through π-π inter-actions [centroid-centroid distances = 3.325 (3) and 3.358 (4) Å] and O-H⋯O hydrogen-bonding, resulting in a two-dimensional network extending parallel to (001).

Entities:  

Year:  2009        PMID: 21577425      PMCID: PMC2969955          DOI: 10.1107/S1600536809031237

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The 1,10-phenanthroline (phen) ligand has been widely used to build novel supra­molecular architectures through its aromatic π–π inter­ations, see: Chen & Liu (2002 ▶). The phen derivative 4,5-diaza­fluorene-9-one was recently shown to form a coordination polymer with a distinctive supra­molecular architecture, see: Kraft et al. (2002 ▶). For the ligand synthesis, see: Henderson et al. (1984 ▶).

Experimental

Crystal data

[Cd(C8H4O4)(C11H6N2O)(H2O)3]·2H2O M = 548.78 Triclinic, a = 6.9383 (10) Å b = 10.8070 (16) Å c = 14.429 (2) Å α = 96.268 (2)° β = 92.602 (2)° γ = 102.019 (2)° V = 1049.3 (3) Å3 Z = 2 Mo Kα radiation μ = 1.10 mm−1 T = 293 K 0.34 × 0.29 × 0.20 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.697, T max = 0.804 5319 measured reflections 3804 independent reflections 3260 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.093 S = 1.05 3804 reflections 284 parameters H-atom parameters constrained Δρmax = 1.39 e Å−3 Δρmin = −0.64 e Å−3 Data collection: APEX2 (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXL97; software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031237/jh2092sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031237/jh2092Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C8H4O4)(C11H6N2O)(H2O)3]·2H2OZ = 2
Mr = 548.78F(000) = 552.0
Triclinic, P1Dx = 1.737 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9383 (10) ÅCell parameters from 25 reflections
b = 10.8070 (16) Åθ = 7.5–15°
c = 14.429 (2) ŵ = 1.10 mm1
α = 96.268 (2)°T = 293 K
β = 92.602 (2)°Block, yellow
γ = 102.019 (2)°0.34 × 0.29 × 0.20 mm
V = 1049.3 (3) Å3
Bruker APEXII diffractometer3804 independent reflections
Radiation source: fine-focus sealed tube3260 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 0 pixels mm-1θmax = 25.3°, θmin = 1.4°
ω scansh = −8→6
Absorption correction: multi-scan (SADABS; Bruker, 1998)k = −12→12
Tmin = 0.697, Tmax = 0.804l = −17→15
5319 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0466P)2 + 0.937P] where P = (Fo2 + 2Fc2)/3
3804 reflections(Δ/σ)max < 0.001
284 parametersΔρmax = 1.39 e Å3
0 restraintsΔρmin = −0.64 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.41915 (4)0.92090 (2)0.19901 (2)0.03260 (12)
O10.4624 (5)0.7585 (3)0.2984 (2)0.0506 (8)
O20.2646 (5)0.7034 (3)0.1714 (2)0.0507 (8)
O30.0030 (5)0.2413 (3)0.0709 (2)0.0466 (7)
O40.0050 (4)0.1021 (2)0.1719 (2)0.0448 (7)
O50.2170 (4)0.9328 (3)0.06495 (19)0.0423 (7)
HO5A0.15230.86170.03760.051*
HO5B0.13100.99040.07850.051*
O60.1543 (4)0.9578 (3)0.28319 (19)0.0409 (7)
HO6A0.06520.88780.29780.049*
HO6B0.08571.00670.24390.049*
O70.6983 (4)0.8944 (3)0.1303 (2)0.0423 (7)
HO7A0.79090.96160.11640.051*
HO7B0.72460.81500.11850.051*
O80.8494 (5)1.5000 (3)0.3739 (3)0.0547 (8)
OW10.1330 (6)0.2440 (4)0.6739 (3)0.0680 (10)*
HW1A0.15940.32830.67550.082*
HW1B0.22870.19980.66740.082*
OW20.8579 (5)0.6822 (3)0.0952 (2)0.0534 (8)
HW2A0.90770.69710.03350.064*
HW2B0.98560.68310.12260.064*
N10.6184 (5)1.0507 (3)0.3377 (2)0.0365 (8)
N20.5214 (5)1.1420 (3)0.1616 (2)0.0328 (7)
C10.6800 (7)1.0281 (4)0.4218 (3)0.0478 (11)
H1A0.65410.94430.43520.057*
C20.7803 (8)1.1222 (5)0.4906 (3)0.0562 (13)
H2A0.82121.10060.54780.067*
C30.8193 (7)1.2488 (5)0.4736 (3)0.0482 (11)
H3A0.88471.31380.51880.058*
C40.7579 (6)1.2732 (4)0.3883 (3)0.0341 (9)
C50.7763 (6)1.3928 (4)0.3402 (3)0.0389 (10)
C60.6842 (6)1.3482 (4)0.2420 (3)0.0354 (9)
C70.6627 (6)1.4071 (4)0.1647 (3)0.0451 (11)
H7A0.70731.49460.16560.054*
C80.5715 (7)1.3310 (5)0.0844 (3)0.0487 (11)
H80.55591.36700.02960.058*
C90.5033 (6)1.2005 (4)0.0861 (3)0.0404 (10)
H9A0.44191.15170.03160.049*
C100.6136 (5)1.2180 (3)0.2354 (3)0.0291 (8)
C110.6594 (6)1.1723 (4)0.3241 (3)0.0320 (8)
C120.3421 (6)0.6768 (4)0.2441 (3)0.0362 (9)
C130.2920 (5)0.5422 (4)0.2679 (3)0.0318 (8)
C140.3450 (6)0.5166 (4)0.3568 (3)0.0362 (9)
H14A0.41130.58200.40140.043*
C150.2974 (6)0.3917 (4)0.3781 (3)0.0411 (10)
H15A0.33120.37370.43750.049*
C160.2012 (6)0.2952 (4)0.3122 (3)0.0338 (9)
H16A0.17040.21210.32730.041*
C170.1493 (5)0.3197 (3)0.2233 (3)0.0276 (8)
C180.1937 (5)0.4439 (3)0.2020 (3)0.0309 (8)
H19A0.15730.46150.14280.037*
C190.0452 (5)0.2137 (3)0.1493 (3)0.0311 (8)
U11U22U33U12U13U23
Cd10.03412 (18)0.02318 (16)0.03710 (18)0.00121 (11)−0.00345 (12)0.00067 (11)
O10.0498 (19)0.0243 (15)0.069 (2)−0.0032 (13)−0.0120 (16)−0.0015 (14)
O20.055 (2)0.0298 (16)0.063 (2)0.0004 (14)−0.0124 (16)0.0103 (14)
O30.0568 (19)0.0375 (16)0.0360 (17)−0.0061 (14)−0.0068 (14)−0.0016 (13)
O40.0468 (18)0.0216 (14)0.061 (2)0.0021 (12)−0.0168 (15)0.0021 (13)
O50.0478 (18)0.0318 (15)0.0423 (17)0.0043 (13)−0.0111 (13)−0.0030 (12)
O60.0420 (16)0.0411 (16)0.0401 (16)0.0089 (13)0.0007 (13)0.0081 (13)
O70.0371 (16)0.0300 (15)0.0556 (18)0.0009 (12)0.0049 (14)−0.0019 (13)
O80.0515 (19)0.0296 (17)0.076 (2)0.0010 (14)−0.0073 (17)−0.0039 (15)
OW20.0510 (19)0.0481 (19)0.061 (2)0.0056 (15)0.0053 (16)0.0144 (16)
N10.0396 (19)0.0273 (17)0.0382 (19)−0.0008 (14)0.0019 (15)0.0008 (14)
N20.0299 (17)0.0321 (18)0.0330 (18)0.0024 (14)−0.0027 (14)−0.0014 (14)
C10.067 (3)0.038 (2)0.039 (2)0.009 (2)0.002 (2)0.011 (2)
C20.069 (3)0.060 (3)0.036 (3)0.009 (3)−0.006 (2)0.010 (2)
C30.049 (3)0.051 (3)0.038 (2)0.002 (2)−0.005 (2)−0.007 (2)
C40.027 (2)0.034 (2)0.036 (2)0.0024 (16)0.0011 (16)−0.0111 (17)
C50.028 (2)0.029 (2)0.055 (3)0.0015 (17)0.0003 (18)−0.0055 (19)
C60.027 (2)0.0250 (19)0.053 (3)0.0035 (16)0.0016 (18)0.0025 (18)
C70.039 (2)0.031 (2)0.065 (3)0.0043 (19)0.002 (2)0.013 (2)
C80.040 (2)0.062 (3)0.050 (3)0.018 (2)0.004 (2)0.020 (2)
C90.039 (2)0.044 (2)0.036 (2)0.0053 (19)0.0006 (18)0.0020 (19)
C100.0218 (18)0.0279 (19)0.036 (2)0.0036 (15)0.0032 (15)−0.0014 (16)
C110.030 (2)0.027 (2)0.036 (2)0.0012 (16)0.0006 (16)−0.0024 (16)
C120.030 (2)0.025 (2)0.051 (3)0.0025 (17)0.0037 (19)0.0002 (18)
C130.0259 (19)0.027 (2)0.041 (2)0.0049 (16)0.0000 (16)0.0001 (16)
C140.039 (2)0.030 (2)0.037 (2)0.0061 (17)−0.0036 (18)−0.0050 (17)
C150.045 (2)0.045 (2)0.034 (2)0.011 (2)−0.0019 (18)0.0073 (19)
C160.035 (2)0.0262 (19)0.042 (2)0.0084 (17)0.0033 (17)0.0063 (17)
C170.0238 (18)0.0235 (18)0.035 (2)0.0036 (15)0.0008 (15)0.0021 (15)
C180.028 (2)0.0264 (19)0.036 (2)0.0041 (16)0.0003 (16)0.0010 (16)
C190.0247 (19)0.024 (2)0.043 (2)0.0039 (15)0.0011 (17)−0.0023 (17)
Cd1—O72.271 (3)C1—H1A0.9300
Cd1—O62.326 (3)C2—C31.388 (7)
Cd1—O22.354 (3)C2—H2A0.9300
Cd1—O52.368 (3)C3—C41.356 (6)
Cd1—O12.441 (3)C3—H3A0.9300
Cd1—N22.472 (3)C4—C111.388 (5)
Cd1—N12.492 (3)C4—C51.517 (6)
Cd1—C122.736 (4)C5—C61.514 (6)
O1—C121.254 (5)C6—C71.361 (6)
O2—C121.246 (5)C6—C101.381 (5)
O3—C191.238 (5)C7—C81.388 (7)
O4—C191.262 (5)C7—H7A0.9300
O5—HO5A0.8494C8—C91.394 (6)
O5—HO5B0.9593C8—H80.9300
O6—HO6A0.9221C9—H9A0.9300
O6—HO6B0.9864C10—C111.466 (6)
O7—HO7A0.9108C12—C131.505 (5)
O7—HO7B0.9138C13—C181.384 (5)
O8—C51.203 (5)C13—C141.390 (6)
OW1—HW1A0.8890C14—C151.393 (6)
OW1—HW1B0.8979C14—H14A0.9300
OW2—HW2A0.9870C15—C161.369 (6)
OW2—HW2B0.9517C15—H15A0.9300
N1—C111.324 (5)C16—C171.385 (5)
N1—C11.333 (5)C16—H16A0.9300
N2—C101.321 (5)C17—C181.385 (5)
N2—C91.332 (5)C17—C191.514 (5)
C1—C21.388 (7)C18—H19A0.9300
O7—Cd1—O6174.04 (10)C4—C3—H3A121.5
O7—Cd1—O294.34 (11)C2—C3—H3A121.5
O6—Cd1—O289.02 (11)C3—C4—C11118.9 (4)
O7—Cd1—O599.74 (11)C3—C4—C5134.3 (4)
O6—Cd1—O585.55 (10)C11—C4—C5106.8 (4)
O2—Cd1—O582.74 (10)O8—C5—C6127.8 (4)
O7—Cd1—O188.67 (11)O8—C5—C4126.7 (4)
O6—Cd1—O189.30 (11)C6—C5—C4105.5 (3)
O2—Cd1—O154.28 (10)C7—C6—C10118.1 (4)
O5—Cd1—O1136.81 (10)C7—C6—C5134.3 (4)
O7—Cd1—N283.60 (10)C10—C6—C5107.6 (3)
O6—Cd1—N295.28 (10)C6—C7—C8117.1 (4)
O2—Cd1—N2156.30 (11)C6—C7—H7A121.4
O5—Cd1—N274.40 (10)C8—C7—H7A121.4
O1—Cd1—N2148.78 (10)C7—C8—C9119.9 (4)
O7—Cd1—N190.91 (11)C7—C8—H8120.1
O6—Cd1—N183.18 (11)C9—C8—H8120.1
O2—Cd1—N1131.53 (11)N2—C9—C8123.6 (4)
O5—Cd1—N1143.43 (10)N2—C9—H9A118.2
O1—Cd1—N177.78 (10)C8—C9—H9A118.2
N2—Cd1—N172.17 (11)N2—C10—C6127.1 (4)
O7—Cd1—C1292.22 (11)N2—C10—C11123.2 (3)
O6—Cd1—C1288.55 (11)C6—C10—C11109.7 (3)
O2—Cd1—C1227.01 (11)N1—C11—C4126.0 (4)
O5—Cd1—C12109.62 (11)N1—C11—C10123.7 (3)
O1—Cd1—C1227.27 (11)C4—C11—C10110.3 (3)
N2—Cd1—C12174.70 (11)O2—C12—O1122.2 (4)
N1—Cd1—C12104.75 (12)O2—C12—C13119.4 (4)
C12—O1—Cd189.6 (3)O1—C12—C13118.4 (4)
C12—O2—Cd193.9 (2)O2—C12—Cd159.1 (2)
Cd1—O5—HO5A115.3O1—C12—Cd163.1 (2)
Cd1—O5—HO5B111.3C13—C12—Cd1177.9 (3)
HO5A—O5—HO5B110.7C18—C13—C14119.9 (4)
Cd1—O6—HO6A117.7C18—C13—C12120.4 (4)
Cd1—O6—HO6B104.4C14—C13—C12119.6 (4)
HO6A—O6—HO6B109.4C13—C14—C15119.1 (4)
Cd1—O7—HO7A122.1C13—C14—H14A120.4
Cd1—O7—HO7B120.4C15—C14—H14A120.4
HO7A—O7—HO7B117.4C16—C15—C14120.5 (4)
HW1A—OW1—HW1B121.2C16—C15—H15A119.8
HW2A—OW2—HW2B93.1C14—C15—H15A119.8
C11—N1—C1114.5 (4)C15—C16—C17120.7 (4)
C11—N1—Cd1109.7 (3)C15—C16—H16A119.6
C1—N1—Cd1135.7 (3)C17—C16—H16A119.6
C10—N2—C9114.2 (3)C16—C17—C18119.1 (3)
C10—N2—Cd1110.7 (2)C16—C17—C19121.4 (3)
C9—N2—Cd1135.1 (3)C18—C17—C19119.5 (3)
N1—C1—C2124.0 (4)C13—C18—C17120.6 (4)
N1—C1—H1A118.0C13—C18—H19A119.7
C2—C1—H1A118.0C17—C18—H19A119.7
C1—C2—C3119.7 (4)O3—C19—O4123.9 (4)
C1—C2—H2A120.2O3—C19—C17118.5 (3)
C3—C2—H2A120.2O4—C19—C17117.5 (3)
C4—C3—C2117.0 (4)
D—H···AD—HH···AD···AD—H···A
O5—HO5A···O3i0.851.952.728 (4)151
O5—HO5B···O4ii0.962.062.933 (4)151
O6—HO6A···OW1iii0.921.862.776 (5)175
O6—HO6B···O4ii0.991.702.675 (4)171
O7—HO7A···O4iv0.911.962.744 (4)143
O7—HO7B···OW20.911.872.757 (4)162
OW1—HW1A···O8v0.892.072.903 (5)156
OW1—HW1B···O1vi0.902.122.824 (5)135
OW2—HW2A···O3vii0.991.802.769 (4)168
OW2—HW2B···O2viii0.951.992.936 (5)173
Table 1

Selected geometric parameters (Å, °)

Cd1—O72.271 (3)
Cd1—O62.326 (3)
Cd1—O22.354 (3)
Cd1—O52.368 (3)
Cd1—O12.441 (3)
Cd1—N22.472 (3)
Cd1—N12.492 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—HO5A⋯O3i0.851.952.728 (4)151
O5—HO5B⋯O4ii0.962.062.933 (4)151
O6—HO6A⋯OW1iii0.921.862.776 (5)175
O6—HO6B⋯O4ii0.991.702.675 (4)171
O7—HO7A⋯O4iv0.911.962.744 (4)143
O7—HO7B⋯OW20.911.872.757 (4)162
OW1—HW1A⋯O8v0.892.072.903 (5)156
OW1—HW1B⋯O1vi0.902.122.824 (5)135
OW2—HW2A⋯O3vii0.991.802.769 (4)168
OW2—HW2B⋯O2viii0.951.992.936 (5)173

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

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