Literature DB >> 21577420

Bis(2,2'-bipyridine-κN,N')(thio-cyanato-κN)copper(II) perchlorate.

Qian Li, Dong Zhang, Chun-Ling Chen, Lin Yan.   

Abstract

The asymmetric unit of title compound, [Cu(NCS)(C(10)H(8)N(2))(2)]ClO(4), contains a bis-(2,2'-bipyridine)(isothio-cyanato)copper(II) cation and a perchlorate anion. In the cation, the Cu(2+) ion is coordinated by four N atoms from two bidentate 2,2'-bipyridine mol-ecules and an N atom from an isothio-cyanate anion, resulting in a distorted CuN(5) pyramidal configuration. The crystal structure is stabilized by weak inter-molecular C-H⋯O and C-H⋯S hydrogen bonds, and weak π-π inter-actions between 2,2'-bipyridine rings [centroid-centroid distance = 3.908 (4) Å]. The perchlorate counteranion is disordered over two positions in a 0.66:0.34 ratio.

Entities:  

Year:  2009        PMID: 21577420      PMCID: PMC2969965          DOI: 10.1107/S1600536809031067

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potenial applications of metal-organic coordination compounds in catalysis, non-linear optics, gas absorption, luminescene and magnetism, see: Kitagawa & Matsuda (2007 ▶); Maspoch et al. (2007 ▶).

Experimental

Crystal data

[Cu(NCS)(C10H8N2)2]ClO4 M = 533.46 Monoclinic, a = 15.151 (2) Å b = 8.9518 (13) Å c = 19.0409 (17) Å β = 120.306 (7)° V = 2229.6 (5) Å3 Z = 4 Mo Kα radiation μ = 1.23 mm−1 T = 293 K 0.21 × 0.15 × 0.13 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.782, T max = 0.856 10831 measured reflections 3917 independent reflections 2370 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.116 S = 1.03 3917 reflections 335 parameters 44 restraints H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.82 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031067/at2856sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031067/at2856Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NCS)(C10H8N2)2]ClO4F(000) = 1084
Mr = 533.46Dx = 1.589 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2091 reflections
a = 15.151 (2) Åθ = 2.5–20.5°
b = 8.9518 (13) ŵ = 1.23 mm1
c = 19.0409 (17) ÅT = 293 K
β = 120.306 (7)°Block, green
V = 2229.6 (5) Å30.21 × 0.15 × 0.13 mm
Z = 4
Bruker SMART CCD area-detector diffractometer3917 independent reflections
Radiation source: fine-focus sealed tube2370 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 25.1°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −9→18
Tmin = 0.782, Tmax = 0.856k = −10→10
10831 measured reflectionsl = −22→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0453P)2] where P = (Fo2 + 2Fc2)/3
3917 reflections(Δ/σ)max < 0.001
335 parametersΔρmax = 0.60 e Å3
44 restraintsΔρmin = −0.82 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.28304 (4)0.52479 (6)0.58542 (3)0.0504 (2)
S10.21213 (11)0.09251 (15)0.69020 (9)0.0736 (4)
N10.4011 (3)0.4415 (4)0.5796 (2)0.0489 (10)
N20.3811 (3)0.7044 (4)0.6288 (2)0.0478 (9)
N30.1728 (3)0.5378 (4)0.4610 (2)0.0475 (9)
N40.1701 (3)0.6262 (4)0.5907 (2)0.0488 (9)
N50.2680 (3)0.3429 (5)0.6365 (3)0.0659 (12)
C10.4060 (4)0.3036 (5)0.5556 (3)0.0588 (13)
H1A0.34940.24160.53750.071*
C20.4912 (4)0.2495 (6)0.5565 (3)0.0637 (14)
H2A0.49180.15350.53810.076*
C30.5754 (4)0.3400 (6)0.5852 (3)0.0657 (14)
H3A0.63480.30550.58750.079*
C40.5712 (4)0.4814 (5)0.6103 (3)0.0576 (13)
H4A0.62780.54390.63000.069*
C50.4828 (3)0.5312 (5)0.6062 (3)0.0453 (11)
C60.4705 (3)0.6823 (5)0.6308 (3)0.0456 (11)
C70.5427 (4)0.7926 (5)0.6539 (3)0.0552 (13)
H7A0.60310.77530.65370.066*
C80.5246 (4)0.9294 (6)0.6772 (3)0.0651 (14)
H8A0.57321.00500.69410.078*
C90.4346 (4)0.9526 (5)0.6753 (3)0.0666 (14)
H9A0.42091.04400.69110.080*
C100.3643 (4)0.8385 (5)0.6498 (3)0.0584 (13)
H10A0.30210.85590.64710.070*
C110.1745 (4)0.4783 (5)0.3972 (3)0.0570 (13)
H11A0.23100.42170.40670.068*
C120.0976 (4)0.4968 (5)0.3191 (3)0.0642 (14)
H12A0.10070.45170.27640.077*
C130.0156 (4)0.5828 (6)0.3046 (3)0.0702 (15)
H13A−0.03740.59870.25160.084*
C140.0126 (4)0.6453 (5)0.3689 (3)0.0617 (14)
H14A−0.04240.70490.36000.074*
C150.0910 (3)0.6196 (5)0.4464 (3)0.0462 (11)
C160.0909 (3)0.6708 (5)0.5202 (3)0.0467 (11)
C170.0122 (4)0.7529 (6)0.5185 (3)0.0660 (15)
H17A−0.04200.78670.46940.079*
C180.0157 (4)0.7834 (6)0.5909 (4)0.0721 (16)
H18A−0.03650.83840.59080.087*
C190.0945 (4)0.7339 (5)0.6616 (4)0.0675 (15)
H19A0.09700.75270.71070.081*
C200.1706 (4)0.6553 (5)0.6597 (3)0.0612 (14)
H20A0.22500.62060.70850.073*
C210.2448 (3)0.2379 (5)0.6594 (3)0.0514 (12)
Cl10.24431 (10)0.98729 (15)0.40224 (9)0.0726 (4)
O1'0.1951 (6)1.1109 (9)0.4087 (6)0.190 (5)0.66
O2'0.1768 (7)0.8670 (8)0.3661 (5)0.193 (5)0.66
O3'0.3286 (6)0.9451 (11)0.4777 (4)0.177 (5)0.66
O4'0.2788 (8)1.0206 (15)0.3457 (6)0.268 (7)0.66
O10.1870 (7)0.9781 (12)0.4423 (6)0.0755 (10)0.34
O20.2143 (8)0.8817 (10)0.3404 (6)0.0728 (10)0.34
O30.3518 (6)0.9693 (14)0.4598 (7)0.0730 (10)0.34
O40.2356 (9)1.1359 (8)0.3709 (6)0.0730 (10)0.34
U11U22U33U12U13U23
Cu10.0461 (4)0.0518 (4)0.0585 (4)0.0054 (3)0.0303 (3)0.0020 (3)
S10.0721 (10)0.0594 (9)0.1024 (12)0.0078 (7)0.0536 (9)0.0197 (8)
N10.049 (2)0.045 (2)0.057 (2)0.0044 (19)0.030 (2)−0.0022 (19)
N20.047 (2)0.043 (2)0.056 (3)0.0038 (18)0.028 (2)−0.0002 (19)
N30.046 (2)0.052 (2)0.051 (2)0.0014 (19)0.029 (2)0.0017 (19)
N40.047 (2)0.054 (2)0.054 (3)0.0036 (19)0.032 (2)0.001 (2)
N50.058 (3)0.068 (3)0.077 (3)0.003 (2)0.038 (3)0.009 (2)
C10.063 (3)0.048 (3)0.071 (4)0.004 (3)0.038 (3)−0.003 (3)
C20.071 (4)0.054 (3)0.074 (4)0.018 (3)0.042 (3)0.001 (3)
C30.057 (4)0.073 (4)0.075 (4)0.020 (3)0.039 (3)0.002 (3)
C40.043 (3)0.066 (3)0.064 (3)0.006 (2)0.027 (3)0.000 (3)
C50.040 (3)0.049 (3)0.047 (3)0.004 (2)0.022 (2)0.003 (2)
C60.041 (3)0.051 (3)0.039 (3)0.004 (2)0.016 (2)0.004 (2)
C70.042 (3)0.058 (3)0.063 (3)−0.003 (2)0.024 (3)−0.003 (3)
C80.052 (3)0.056 (3)0.075 (4)−0.007 (3)0.023 (3)−0.003 (3)
C90.077 (4)0.050 (3)0.065 (4)0.005 (3)0.031 (3)−0.009 (3)
C100.056 (3)0.053 (3)0.071 (4)0.006 (3)0.036 (3)−0.002 (3)
C110.059 (3)0.065 (3)0.061 (3)0.002 (3)0.040 (3)0.000 (3)
C120.070 (4)0.078 (4)0.057 (4)−0.012 (3)0.041 (3)−0.008 (3)
C130.056 (4)0.090 (4)0.057 (4)−0.013 (3)0.022 (3)0.007 (3)
C140.048 (3)0.072 (4)0.061 (4)0.005 (3)0.024 (3)0.006 (3)
C150.044 (3)0.042 (3)0.056 (3)−0.001 (2)0.028 (3)0.002 (2)
C160.037 (3)0.047 (3)0.058 (3)−0.001 (2)0.026 (3)−0.002 (2)
C170.049 (3)0.072 (4)0.075 (4)0.013 (3)0.030 (3)0.004 (3)
C180.063 (4)0.070 (4)0.103 (5)0.004 (3)0.057 (4)−0.014 (4)
C190.075 (4)0.065 (4)0.085 (4)−0.009 (3)0.057 (4)−0.013 (3)
C200.063 (3)0.069 (3)0.060 (3)0.000 (3)0.037 (3)−0.002 (3)
C210.040 (3)0.053 (3)0.064 (3)0.010 (2)0.029 (3)0.001 (3)
Cl10.0573 (8)0.0714 (9)0.0791 (10)0.0056 (7)0.0270 (8)−0.0106 (7)
O1'0.128 (7)0.134 (7)0.300 (13)0.047 (6)0.102 (8)−0.069 (7)
O2'0.201 (10)0.176 (8)0.174 (9)−0.140 (8)0.072 (7)−0.028 (7)
O3'0.183 (9)0.215 (10)0.062 (5)0.082 (8)0.008 (6)0.001 (5)
O4'0.224 (13)0.41 (2)0.259 (14)−0.040 (12)0.189 (13)0.037 (12)
O10.0592 (14)0.0735 (14)0.0817 (15)0.0063 (13)0.0267 (13)−0.0106 (13)
O20.0582 (14)0.0710 (14)0.0786 (15)0.0059 (13)0.0266 (13)−0.0119 (13)
O30.0569 (13)0.0713 (14)0.0797 (15)0.0063 (13)0.0263 (13)−0.0118 (13)
O40.0577 (13)0.0715 (14)0.0796 (15)0.0058 (13)0.0270 (13)−0.0097 (13)
Cu1—N51.968 (4)C11—C121.360 (7)
Cu1—N41.985 (3)C11—H11A0.9300
Cu1—N11.992 (4)C12—C131.365 (6)
Cu1—N22.058 (4)C12—H12A0.9300
Cu1—N32.102 (4)C13—C141.369 (6)
S1—C211.605 (5)C13—H13A0.9300
N1—C11.331 (5)C14—C151.368 (6)
N1—C51.342 (5)C14—H14A0.9300
N2—C101.331 (5)C15—C161.478 (6)
N2—C61.349 (5)C16—C171.387 (6)
N3—C111.339 (5)C17—C181.380 (7)
N3—C151.342 (5)C17—H17A0.9300
N4—C161.332 (5)C18—C191.347 (7)
N4—C201.335 (5)C18—H18A0.9300
N5—C211.163 (5)C19—C201.368 (6)
C1—C21.371 (6)C19—H19A0.9300
C1—H1A0.9300C20—H20A0.9300
C2—C31.371 (6)Cl1—O1'1.374 (5)
C2—H2A0.9300Cl1—O21.395 (7)
C3—C41.366 (6)Cl1—O2'1.403 (5)
C3—H3A0.9300Cl1—O3'1.409 (5)
C4—C51.376 (6)Cl1—O11.419 (6)
C4—H4A0.9300Cl1—O41.437 (7)
C5—C61.473 (6)Cl1—O31.442 (7)
C6—C71.372 (6)Cl1—O4'1.446 (6)
C7—C81.377 (6)O1'—O41.180 (11)
C7—H7A0.9300O1'—O11.385 (11)
C8—C91.362 (7)O2'—O20.927 (11)
C8—H8A0.9300O2'—O11.701 (11)
C9—C101.375 (6)O3'—O30.638 (17)
C9—H9A0.9300O4'—O41.429 (12)
C10—H10A0.9300O4'—O21.553 (12)
N5—Cu1—N492.02 (16)N3—C15—C16114.5 (4)
N5—Cu1—N192.83 (16)C14—C15—C16123.8 (4)
N4—Cu1—N1174.75 (15)N4—C16—C17120.5 (4)
N5—Cu1—N2133.48 (16)N4—C16—C15115.7 (4)
N4—Cu1—N295.11 (14)C17—C16—C15123.7 (5)
N1—Cu1—N280.08 (15)C18—C17—C16118.9 (5)
N5—Cu1—N3112.25 (16)C18—C17—H17A120.6
N4—Cu1—N379.43 (15)C16—C17—H17A120.6
N1—Cu1—N3100.55 (14)C19—C18—C17120.1 (5)
N2—Cu1—N3114.25 (14)C19—C18—H18A119.9
C1—N1—C5119.0 (4)C17—C18—H18A119.9
C1—N1—Cu1125.0 (3)C18—C19—C20118.5 (5)
C5—N1—Cu1116.0 (3)C18—C19—H19A120.8
C10—N2—C6117.8 (4)C20—C19—H19A120.8
C10—N2—Cu1128.0 (3)N4—C20—C19122.7 (5)
C6—N2—Cu1114.1 (3)N4—C20—H20A118.7
C11—N3—C15117.8 (4)C19—C20—H20A118.7
C11—N3—Cu1129.2 (3)N5—C21—S1179.5 (6)
C15—N3—Cu1112.9 (3)O1'—Cl1—O2131.4 (6)
C16—N4—C20119.3 (4)O1'—Cl1—O2'111.6 (5)
C16—N4—Cu1116.5 (3)O2—Cl1—O2'38.7 (5)
C20—N4—Cu1124.2 (3)O1'—Cl1—O3'112.2 (5)
C21—N5—Cu1170.6 (4)O2—Cl1—O3'114.9 (6)
N1—C1—C2122.6 (5)O2'—Cl1—O3'110.8 (5)
N1—C1—H1A118.7O1'—Cl1—O159.4 (5)
C2—C1—H1A118.7O2—Cl1—O1112.8 (6)
C1—C2—C3118.5 (5)O2'—Cl1—O174.1 (5)
C1—C2—H2A120.7O3'—Cl1—O185.6 (5)
C3—C2—H2A120.7O1'—Cl1—O449.6 (5)
C4—C3—C2119.2 (5)O2—Cl1—O4110.7 (6)
C4—C3—H3A120.4O2'—Cl1—O4128.0 (6)
C2—C3—H3A120.4O3'—Cl1—O4121.2 (6)
C3—C4—C5119.8 (5)O1—Cl1—O4108.9 (5)
C3—C4—H4A120.1O1'—Cl1—O3118.5 (7)
C5—C4—H4A120.1O2—Cl1—O3109.2 (6)
N1—C5—C4120.9 (4)O2'—Cl1—O3123.4 (7)
N1—C5—C6115.4 (4)O3'—Cl1—O325.8 (7)
C4—C5—C6123.8 (4)O1—Cl1—O3110.4 (6)
N2—C6—C7122.0 (4)O4—Cl1—O3104.5 (6)
N2—C6—C5114.3 (4)O1'—Cl1—O4'108.5 (5)
C7—C6—C5123.6 (4)O2—Cl1—O4'66.3 (6)
C6—C7—C8119.2 (4)O2'—Cl1—O4'104.0 (5)
C6—C7—H7A120.4O3'—Cl1—O4'109.4 (5)
C8—C7—H7A120.4O1—Cl1—O4'164.2 (6)
C9—C8—C7119.1 (5)O4—Cl1—O4'59.4 (5)
C9—C8—H8A120.4O3—Cl1—O4'84.0 (7)
C7—C8—H8A120.4O4—O1'—Cl168.0 (4)
C8—C9—C10118.8 (5)O4—O1'—O1129.8 (6)
C8—C9—H9A120.6Cl1—O1'—O161.9 (4)
C10—C9—H9A120.6O2—O2'—Cl170.2 (6)
N2—C10—C9123.0 (5)O2—O2'—O1123.5 (7)
N2—C10—H10A118.5Cl1—O2'—O153.4 (3)
C9—C10—H10A118.5O3—O3'—Cl180.0 (9)
N3—C11—C12123.1 (5)O4—O4'—Cl160.0 (4)
N3—C11—H11A118.4O4—O4'—O2102.7 (6)
C12—C11—H11A118.4Cl1—O4'—O255.3 (4)
C11—C12—C13118.7 (5)O1'—O1—Cl158.7 (4)
C11—C12—H12A120.7O1'—O1—O2'95.7 (6)
C13—C12—H12A120.7Cl1—O1—O2'52.5 (3)
C12—C13—C14119.2 (5)O2'—O2—Cl171.1 (6)
C12—C13—H13A120.4O2'—O2—O4'127.8 (8)
C14—C13—H13A120.4Cl1—O2—O4'58.4 (4)
C15—C14—C13119.6 (5)O3'—O3—Cl174.2 (9)
C15—C14—H14A120.2O1'—O4—O4'122.4 (7)
C13—C14—H14A120.2O1'—O4—Cl162.4 (4)
N3—C15—C14121.6 (4)O4'—O4—Cl160.6 (4)
D—H···AD—HH···AD···AD—H···A
C7—H7A···O4'i0.932.553.176 (15)125
C10—H10A···S1ii0.932.853.587 (6)137
C18—H18A···O1'iii0.932.453.335 (13)159
Table 1

Selected geometric parameters (Å, °)

Cu1—N51.968 (4)
Cu1—N41.985 (3)
Cu1—N11.992 (4)
Cu1—N22.058 (4)
Cu1—N32.102 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7A⋯O4′i0.932.553.176 (15)125
C10—H10A⋯S1ii0.932.853.587 (6)137
C18—H18A⋯O1′iii0.932.453.335 (13)159

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Old materials with new tricks: multifunctional open-framework materials.

Authors:  Daniel Maspoch; Daniel Ruiz-Molina; Jaume Veciana
Journal:  Chem Soc Rev       Date:  2007-02-08       Impact factor: 54.564

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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