Literature DB >> 21577409

Sodium 2-nitro-cinnamate dihydrate: a one-dimensional hydrogen-bonded coordination polymer.

Graham Smith1, Urs D Wermuth.   

Abstract

The title compound catena-poly[aqua-sodium-μ(2)-aqua-μ(3)-2-nitro-cinnamato], [Na(C(9)H(6)NO(4))(H(2)O)(2)](n), the sodium salt of trans-2-nitro-cinnamic acid, is a one-dimensional coordination polymer based on six-coordinate octa-hedral NaO(6) centres, comprising three facially related monodentate carboxyl-ate O-atom donors from separate ligands (all bridging) [Na-O = 2.4370 (13)-2.5046 (13) Å], and three water mol-ecules (two bridging and one monodentate) [Na-O = 2.3782 (13)-2.4404 (17) Å]. The structure is also stabilized by intra-chain water-carboxyl-ate and water-nitro O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577409      PMCID: PMC2969855          DOI: 10.1107/S1600536809030402

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on similar compounds, see: Crowther et al. (2008 ▶); Kariuki et al. (1995 ▶); Kula et al. (2007 ▶); Schmidt (1964 ▶); Smith et al. (2006 ▶); Trividi et al. (2005 ▶).

Experimental

Crystal data

[Na(C9H6NO4)(H2O)2] M = 251.17 Monoclinic, a = 19.4179 (7) Å b = 3.6899 (2) Å c = 14.8738 (7) Å β = 92.239 (4)° V = 1064.90 (9) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 297 K 0.40 × 0.30 × 0.13 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.93, T max = 0.98 6531 measured reflections 2100 independent reflections 1626 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.113 S = 1.09 2100 reflections 170 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis Pro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809030402/su2131sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030402/su2131Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na(C9H6NO4)(H2O)2]F(000) = 520
Mr = 251.17Dx = 1.567 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2943 reflections
a = 19.4179 (7) Åθ = 3.0–28.7°
b = 3.6899 (2) ŵ = 0.17 mm1
c = 14.8738 (7) ÅT = 297 K
β = 92.239 (4)°Plate, colourless
V = 1064.90 (9) Å30.40 × 0.30 × 0.13 mm
Z = 4
Oxford Diffraction Gemini-S CCD-detector diffractometer2100 independent reflections
Radiation source: Enhance (Mo) X-ray source1626 reflections with I > 2σ(I)
graphiteRint = 0.019
ω scansθmax = 26.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→21
Tmin = 0.93, Tmax = 0.98k = −4→4
6531 measured reflectionsl = −18→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0708P)2] where P = (Fo2 + 2Fc2)/3
2100 reflections(Δ/σ)max < 0.001
170 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Na10.05494 (3)0.73072 (17)−0.06704 (4)0.0272 (2)
O1W0.02635 (6)0.2374 (3)−0.16440 (8)0.0319 (4)
O2W0.16105 (8)0.6812 (5)−0.14886 (12)0.0691 (7)
O210.29871 (7)0.4625 (6)0.31366 (9)0.0637 (6)
O220.39979 (7)0.2280 (5)0.32066 (10)0.0541 (6)
O310.06940 (6)0.2430 (3)0.04255 (8)0.0282 (4)
O320.10417 (6)0.0743 (4)0.18086 (8)0.0336 (4)
N210.35246 (7)0.3769 (4)0.27927 (10)0.0339 (5)
C10.30837 (8)0.4562 (5)0.12070 (11)0.0267 (5)
C20.36252 (8)0.4742 (4)0.18535 (11)0.0261 (5)
C30.42813 (9)0.5880 (5)0.16617 (12)0.0327 (6)
C40.44154 (10)0.6987 (5)0.08063 (14)0.0384 (6)
C50.38972 (10)0.6860 (5)0.01494 (13)0.0368 (6)
C60.32514 (9)0.5634 (5)0.03431 (12)0.0346 (6)
C110.23935 (9)0.3141 (5)0.13955 (12)0.0297 (5)
C210.18383 (9)0.3638 (5)0.08772 (13)0.0345 (6)
C310.11421 (8)0.2155 (4)0.10637 (11)0.0256 (5)
H30.462900.589500.210900.0390*
H40.485200.781500.067200.0460*
H50.398500.76120−0.043200.0440*
H60.291400.55150−0.011800.0420*
H110.234900.179700.191900.0360*
H11W0.0460 (11)0.241 (6)−0.209 (2)0.055 (8)*
H12W−0.0168 (12)0.157 (7)−0.1733 (17)0.044 (8)*
H210.188100.501000.035800.0410*
H21W0.1828 (16)0.851 (9)−0.138 (2)0.093 (13)*
H22W0.1500 (18)0.666 (12)−0.209 (2)0.101 (14)*
U11U22U33U12U13U23
Na10.0279 (4)0.0275 (4)0.0260 (4)−0.0019 (3)−0.0005 (3)0.0007 (3)
O1W0.0363 (7)0.0350 (7)0.0244 (7)−0.0082 (5)0.0026 (5)−0.0002 (5)
O2W0.0399 (9)0.1143 (15)0.0532 (10)−0.0214 (9)0.0046 (7)0.0098 (9)
O210.0357 (8)0.1222 (15)0.0337 (8)0.0081 (9)0.0067 (6)−0.0065 (9)
O220.0475 (9)0.0775 (12)0.0364 (9)0.0164 (7)−0.0096 (7)0.0112 (7)
O310.0220 (6)0.0370 (7)0.0253 (6)−0.0013 (5)−0.0039 (5)0.0011 (5)
O320.0290 (7)0.0461 (8)0.0255 (7)0.0007 (5)0.0005 (5)0.0056 (6)
N210.0266 (8)0.0471 (9)0.0276 (8)−0.0020 (7)−0.0027 (6)−0.0022 (7)
C10.0235 (8)0.0281 (9)0.0283 (9)0.0035 (7)0.0004 (7)−0.0017 (7)
C20.0264 (8)0.0257 (8)0.0260 (9)0.0040 (7)0.0003 (7)−0.0020 (7)
C30.0255 (9)0.0331 (10)0.0393 (11)−0.0010 (8)−0.0021 (7)−0.0033 (8)
C40.0299 (10)0.0362 (10)0.0499 (13)−0.0071 (8)0.0106 (9)−0.0017 (9)
C50.0405 (11)0.0374 (10)0.0331 (11)−0.0045 (8)0.0097 (8)0.0035 (8)
C60.0340 (10)0.0415 (11)0.0281 (9)0.0024 (8)−0.0026 (7)0.0020 (8)
C110.0261 (9)0.0353 (10)0.0276 (9)−0.0015 (7)0.0001 (7)−0.0008 (7)
C210.0266 (9)0.0435 (11)0.0334 (10)−0.0035 (8)−0.0004 (7)0.0093 (8)
C310.0231 (8)0.0288 (9)0.0248 (9)0.0039 (7)0.0008 (7)−0.0028 (7)
Na1—O1W2.3782 (13)C1—C21.399 (2)
Na1—O2W2.4404 (17)C1—C61.395 (2)
Na1—O312.4370 (13)C1—C111.476 (2)
Na1—O1Wi2.4162 (13)C2—C31.382 (2)
Na1—O31i2.5046 (13)C3—C41.371 (3)
Na1—O31ii2.4577 (13)C4—C51.376 (3)
O21—N211.222 (2)C5—C61.374 (3)
O22—N211.217 (2)C11—C211.314 (3)
O31—C311.267 (2)C21—C311.494 (2)
O32—C311.247 (2)C3—H30.9300
O1W—H11W0.78 (3)C4—H40.9300
O1W—H12W0.89 (2)C5—H50.9300
O2W—H21W0.77 (3)C6—H60.9300
O2W—H22W0.91 (4)C11—H110.9300
N21—C21.463 (2)C21—H210.9300
O1W—Na1—O2W79.67 (5)C2—C1—C6115.06 (15)
O1W—Na1—O3181.96 (4)C2—C1—C11123.37 (15)
O1W—Na1—O1Wi100.64 (4)C6—C1—C11121.46 (15)
O1W—Na1—O31i172.53 (5)N21—C2—C1121.34 (14)
O1W—Na1—O31ii85.02 (4)N21—C2—C3115.49 (14)
O2W—Na1—O31101.58 (6)C1—C2—C3123.16 (15)
O1Wi—Na1—O2W86.43 (5)C2—C3—C4119.49 (17)
O2W—Na1—O31i107.80 (5)C3—C4—C5119.26 (18)
O2W—Na1—O31ii158.48 (6)C4—C5—C6120.69 (18)
O1Wi—Na1—O31171.93 (5)C1—C6—C5122.29 (16)
O31—Na1—O31i96.60 (4)C1—C11—C21124.71 (17)
O31—Na1—O31ii91.04 (4)C11—C21—C31124.59 (17)
O1Wi—Na1—O31i79.83 (4)O31—C31—C21115.57 (14)
O1Wi—Na1—O31ii81.62 (4)O32—C31—C21119.48 (15)
O31i—Na1—O31ii87.68 (4)O31—C31—O32124.96 (15)
Na1—O1W—Na1iii100.64 (5)C2—C3—H3120.00
Na1—O31—C31128.20 (10)C4—C3—H3120.00
Na1—O31—Na1iii96.60 (5)C3—C4—H4120.00
Na1—O31—Na1ii88.96 (4)C5—C4—H4120.00
Na1iii—O31—C31118.92 (10)C4—C5—H5120.00
Na1ii—O31—C31122.84 (10)C6—C5—H5120.00
Na1iii—O31—Na1ii92.32 (4)C1—C6—H6119.00
H11W—O1W—H12W112 (2)C5—C6—H6119.00
H21W—O2W—H22W111 (4)C1—C11—H11118.00
O21—N21—C2118.98 (14)C21—C11—H11118.00
O22—N21—C2117.87 (14)C11—C21—H21118.00
O21—N21—O22123.06 (16)C31—C21—H21118.00
O2W—Na1—O1W—Na1iii95.66 (6)O31—Na1—O31ii—C31ii−136.41 (11)
O31—Na1—O1W—Na1iii−7.75 (5)Na1—O31—C31—O32145.52 (13)
O1Wi—Na1—O1W—Na1iii180.00 (6)Na1—O31—C31—C21−35.11 (19)
O31ii—Na1—O1W—Na1iii−99.51 (5)Na1iii—O31—C31—O32−87.48 (18)
O1W—Na1—O31—C31142.67 (13)Na1iii—O31—C31—C2191.89 (14)
O1W—Na1—O31—Na1iii7.39 (4)Na1ii—O31—C31—O3226.8 (2)
O1W—Na1—O31—Na1ii−84.82 (4)Na1ii—O31—C31—C21−153.81 (11)
O2W—Na1—O31—C3165.02 (14)O21—N21—C2—C1−38.6 (2)
O2W—Na1—O31—Na1iii−70.26 (6)O21—N21—C2—C3140.47 (18)
O2W—Na1—O31—Na1ii−162.47 (5)O22—N21—C2—C1144.65 (17)
O31i—Na1—O31—C31−44.72 (13)O22—N21—C2—C3−36.2 (2)
O31i—Na1—O31—Na1iii180.00 (4)C6—C1—C2—N21178.85 (15)
O31i—Na1—O31—Na1ii87.79 (4)C6—C1—C2—C3−0.2 (3)
O31ii—Na1—O31—C31−132.51 (13)C11—C1—C2—N21−4.8 (3)
O31ii—Na1—O31—Na1iii92.21 (5)C11—C1—C2—C3176.18 (17)
O31ii—Na1—O31—Na1ii0.00 (3)C2—C1—C6—C5−1.5 (3)
O1W—Na1—O1Wi—Na1i−180.00 (6)C11—C1—C6—C5−177.99 (17)
O2W—Na1—O1Wi—Na1i−101.22 (6)C2—C1—C11—C21164.51 (18)
O2W—Na1—O31i—Na1i75.56 (6)C6—C1—C11—C21−19.4 (3)
O2W—Na1—O31i—C31i−65.26 (12)N21—C2—C3—C4−177.36 (16)
O31—Na1—O31i—Na1i180.00 (3)C1—C2—C3—C41.7 (3)
O31—Na1—O31i—C31i39.19 (12)C2—C3—C4—C5−1.6 (3)
O1W—Na1—O31ii—Na1ii81.83 (4)C3—C4—C5—C6−0.1 (3)
O1W—Na1—O31ii—C31ii−54.58 (11)C4—C5—C6—C11.7 (3)
O2W—Na1—O31ii—Na1ii126.42 (15)C1—C11—C21—C31179.16 (16)
O2W—Na1—O31ii—C31ii−10.0 (2)C11—C21—C31—O31−169.51 (17)
O31—Na1—O31ii—Na1ii0.00 (5)C11—C21—C31—O329.9 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H11W···O32iv0.78 (3)2.14 (3)2.8871 (17)162 (2)
O1W—H12W···O32v0.89 (2)1.90 (2)2.7852 (17)171 (2)
O2W—H21W···O21vi0.77 (3)2.49 (3)3.050 (2)131 (3)
O2W—H22W···O32iv0.91 (4)2.04 (5)2.882 (2)153 (4)
C11—H11···O210.932.392.846 (2)110
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H11W⋯O32i0.78 (3)2.14 (3)2.8871 (17)162 (2)
O1W—H12W⋯O32ii0.89 (2)1.90 (2)2.7852 (17)171 (2)
O2W—H21W⋯O21iii0.77 (3)2.49 (3)3.050 (2)131 (3)
O2W—H22W⋯O32i0.91 (4)2.04 (5)2.882 (2)153 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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