Literature DB >> 21575594

Spatial structure and dimer--monomer equilibrium of the ErbB3 transmembrane domain in DPC micelles.

K S Mineev1, N F Khabibullina, E N Lyukmanova, D A Dolgikh, M P Kirpichnikov, A S Arseniev.   

Abstract

In present work the interaction of two TM α-helices of the ErbB3 receptor tyrosine kinase from the ErbB or HER family (residues 639-670) was studied by means of NMR spectroscopy in a membrane-mimicking environment provided by the DPC micelles. The ErbB3 TM segment appeared to form a parallel symmetric dimer in a left-handed orientation. The interaction between TM spans is accomplished via the non-standard motif and is supported by apolar contacts of bulky side chains and by stacking of aromatic rings together with π-cation interactions of Phe and Arg side chains. The investigation of the dimer--monomer equilibrium revealed thermodynamic properties of the assembly and the presence of two distinct regimes of the dimerization at low and at high peptide/detergent ratio. It was found that the detergent in case of ErbB3 behaves not as an ideal solvent, thus affecting the dimer--monomer equilibrium. Such behavior may account for the problems occurring with the refolding and stability of multispan helical membrane proteins in detergent solutions. The example of ErbB3 allows us to conclude that the thermodynamic parameters of dimerization, measured in micelles for two different helical pairs, cannot be compared without the investigation of their dependence on detergent concentration.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21575594     DOI: 10.1016/j.bbamem.2011.04.017

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  11 in total

1.  Production of disulfide-stabilized transmembrane peptide complexes for structural studies.

Authors:  Pooja Sharma; Mariam Kaywan-Lutfi; Logesvaran Krshnan; Eamon F X Byrne; Melissa Joy Call; Matthew Edwin Call
Journal:  J Vis Exp       Date:  2013-03-06       Impact factor: 1.355

2.  Evolutionary-guided de novo structure prediction of self-associated transmembrane helical proteins with near-atomic accuracy.

Authors:  Y Wang; P Barth
Journal:  Nat Commun       Date:  2015-05-21       Impact factor: 14.919

3.  NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins.

Authors:  D M Lesovoy; K S Mineev; P E Bragin; O V Bocharova; E V Bocharov; A S Arseniev
Journal:  J Biomol NMR       Date:  2017-10-23       Impact factor: 2.835

4.  TMDIM: an improved algorithm for the structure prediction of transmembrane domains of bitopic dimers.

Authors:  Han Cao; Marcus C K Ng; Siti Azma Jusoh; Hio Kuan Tai; Shirley W I Siu
Journal:  J Comput Aided Mol Des       Date:  2017-09-01       Impact factor: 3.686

Review 5.  Transmembrane helix dimerization: beyond the search for sequence motifs.

Authors:  Edwin Li; William C Wimley; Kalina Hristova
Journal:  Biochim Biophys Acta       Date:  2011-09-01

6.  Hydrophobic matching controls the tilt and stability of the dimeric platelet-derived growth factor receptor (PDGFR) β transmembrane segment.

Authors:  Claudia Muhle-Goll; Silke Hoffmann; Sergii Afonin; Stephan L Grage; Anton A Polyansky; Dirk Windisch; Marcel Zeitler; Jochen Bürck; Anne S Ulrich
Journal:  J Biol Chem       Date:  2012-05-22       Impact factor: 5.157

Review 7.  Effect of Membrane Composition on Receptor Association: Implications of Cancer Lipidomics on ErbB Receptors.

Authors:  Aiswarya B Pawar; Durba Sengupta
Journal:  J Membr Biol       Date:  2018-01-19       Impact factor: 1.843

Review 8.  Physical-chemical principles underlying RTK activation, and their implications for human disease.

Authors:  Lijuan He; Kalina Hristova
Journal:  Biochim Biophys Acta       Date:  2011-08-05

9.  Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.

Authors:  Liqun Zhang; Alexander J Sodt; Richard M Venable; Richard W Pastor; Matthias Buck
Journal:  Proteins       Date:  2012-11-05

10.  Primary and secondary dimer interfaces of the fibroblast growth factor receptor 3 transmembrane domain: characterization via multiscale molecular dynamics simulations.

Authors:  Tyler Reddy; Santiago Manrique; Amanda Buyan; Benjamin A Hall; Alan Chetwynd; Mark S P Sansom
Journal:  Biochemistry       Date:  2014-01-08       Impact factor: 3.321

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