| Literature DB >> 21572952 |
Qi Xia1, Linfu Zhou, Dongcheng Liu, Zhi Chen, Feng Chen.
Abstract
BACKGROUND: The clearance of hepatitis B virus (HBV) is a complex process which may be influenced by many factors including polymorphisms in the tumor necrosis factor <alpha> (TNF-<alpha>) gene promoter. However, previous reports regarding the relationship between polymorphisms in the TNF-<alpha> promoter and HBV clearance have been inconsistent. Therefore, we performed a meta-analysis on a large population to address this inconsistency.Entities:
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Year: 2011 PMID: 21572952 PMCID: PMC3091871 DOI: 10.1371/journal.pone.0019606
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow diagram of identifying potential studies in our meta-analysis.
Characteristics of Studies Included in the Meta-analysis.
| Studies(Year/Countries) | Age (mean±SD) | Case of CHB(Males/%) | Case of HC(Males/%) | Methods | Studied Polymorphisms | Findings | |
| CHB | HC | ||||||
| Hohler, T. | NA | NA | 71(NA) | 32(NA) | PCR | −238,−308 | The |
| Kim, Y. J. | Male 49.9±10.4;Female 50.8±10.6 | Male 54.7±10.9;Female 53.6±11.0 | 1109(74.4) | 291(65.5) | Single base primer extension assay | −163,−238,−308, −857,−863, 1031 | The |
| Zhang,P.A | 54.7±14.8 | 56.4±14.0 | 131(67.9) | 165(66.1) | PCR-RFLP | −238,−308,−857 −863, | The |
| Li, H. Q. | 33.37±12.67 | 34.68±11.34 | 433(81.8) | 244(55.8) | PCR | −238, −857 | The frequency of -238GG genotype in self-limited group was significantly higher than chronic HBV group .The frequency of |
| Niro, G. A. | 52±12 | 46.3±7.4 | 184(81.5) | 96(79.2) | DNA sequencing | −238,−308, −863,−1031 | The |
| Cheong, J. Y. | 37.74±8.90 | 47.96±s8.77 | 261(75.1) | 204(72.5) | Single base primer extension assay | −238,−308 | The |
| Somi, M. H. | NA | NA | 100(NA) | 91(NA) | PCR | −308 | The |
| Kummee, P. | With HCC: 50.8±13.9 | 51.0±12.3 | With HCC: 100(68.0) | 100(48.0) | PCR-RFLP | −238,−308, −863 | The |
| Without HCC:57.5±14.2 | Without HCC:50(60.0) | ||||||
| Ribeiro, C. S. | 37±11.65 | 39.5±10.2 | 30(60.0) | 41(48.8) | PCR | −308 | The |
| Xing,P,X | 39.65±19.3 | 38.5±18.2 | 111(85.6) | 100(66.0) | Gene Chips | −238,−308 | The |
| Chen, D. Q. | 40.9±10.9 | NA | 252 (60.7) | 109 (55.0) | PCR-RFLP | −238,−308,−857 ,−863 | The |
| Wan,P.Q | 54.7±14.8 | 56.4±14.0 | 74(59.5) | 64(62.5) | PCR-RFLP | −857, −863 | In Guangxi population, the |
Abbreviations: CHB, chronic HBV infection; HC, HBV clearance; HCC, hepatocellular carcinoma; PCR, polymerase chain reaction; PRLP, restriction fragment length polymorphism; NA, Not Applicable.
Meta-analysis of effect of TNF-α promoter polymorphisms on the risk of HBV persistence.
| Genotype comparisons | NO. of CHB | NO. of HC | OR [95% CI,] | Z ( | Heterogeneity of study design | ||||
| χ2 | df ( | I2 | |||||||
| −1031 | T allele | Overall | 1617 | 495 | 0.86[0.68,1.08] | 1.27(0.21) | 0.01 | 1(0.90) | 0% |
| TT | Overall | 827 | 263 | 0.54[0.29,1.02] | 1.89(0.06) | 0.21 | 1(0.65) | 0% | |
| TT | Overall | 1222 | 379 | 0.82[0.65,1.05] | 1.55(0.12) | 0.06 | 1(0.81) | 0% | |
| CC | Overall | 1222 | 379 | 1.77[0.94,3.31] | 1.78(0.08) | 0.26 | 1(0.61) | 0% | |
| −863 | C allele | Overall | 2450 | 1387 | 0.91[0.78,1.07] | 1.11(0.27) | 8.40 | 5(0.14) | 40% |
| Asian | 2208 | 1262 | 0.91 [0.77,1.08] | 1.06 (0.29) | 8.40 | 4(0.08) | 52% | ||
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| CC | Overall | 1881 | 1065 | 0.95[0.68,1.33] | 0.29 (0.77) | 17.06 | 5(0.004) | 71% | |
| Asian | 1697 | 969 | 0.97[0.65,1.44] | 0.16(0.87) | 17.06 | 4(0.002) | 77% | ||
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| −857 | C allele | Asian | 1993 | 851 | 1.04[0.85,1.28] | 0.38(0.70) | 5.55 | 2(0.06) | 64% |
| CC | Asian | 1215 | 527 | 0.90[0.51,1.59] | 0.35(0.73) | 2.20 | 2(0.33) | 9% | |
| CC | Asian | 1604 | 689 | 1.13[0.69,1.85] | 0.47(0.64) | 9.47 | 2(0.009) | 79% | |
| TT | Asian | 1604 | 689 | 1.15[0.65,2.01] | 0.47(0.64) | 2.08 | 2(0.35) | 4% | |
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| European | 304 | 159 | 1.15[0.70,1.89] | 0.56(0.57) | 0.58 | 1(0.45) | 0% | ||
| GG | Overall | 2012 | 1178 | 0.62[0.23,1.67] | 0.94(0.35) | 0.98 | 6(0.98) | 0% | |
| Asian | 1785 | 1047 | 0.67[0.19,2.33] | 0.64(0.52) | 0.44 | 3(0.93) | 0% | ||
| European | 206 | 97 | 0.35[0.04,2.95] | 0.97(0.33) | 0.02 | 1(0.89) | 0% | ||
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| European | 384 | 258 | 1.31[0.90,1.91] | 1.41(0.16) | 0.54 | 2(0.76) | 0% | ||
| AA | Overall | 2271 | 1373 | 1.57[0.59,4.17] | 0.90(0.37) | 1.33 | 6(0.97) | 0% | |
| Asian | 1836 | 1113 | 1.65[0.40,6.77] | 0.69(0.49) | 0.24 | 2(0.89) | 0% | ||
| European | 384 | 258 | 1.49[0.47,4.71] | 0.68(0.50) | 0.26 | 2(0.88) | 0% | ||
| −238 | G allele | Overall | 2715 | 1588 | 0.92[0.72,1.18] | 0.65(0.52) | 12.25 | 8(0.14) | 35% |
| Asian | 2421 | 1451 | 1.01 [0.77,1.33] | 0.10(0.92) | 8.36 | 6(0.21) | 28% | ||
| European | 294 | 137 | 0.50 [0.77,1.33] | 1.87(0.06) | 1.22 | 1(0.27) | 18% | ||
| GG | Overall | 2281 | 1384 | 0.88[0.32,2.45] | 0.52(0.70) | 0.52 | 4(0.97) | 0% | |
| Asian | 2065 | 1265 | 0.83 [0.25,2.70] | 0.23(0.75) | 0.23 | 2(0.89) | 0% | ||
| European | 216 | 119 | 1.07 [0.14,8.28] | 0.24(0.95) | 0.24 | 1(0.62) | 0% | ||
| GG | Overall | 2498 | 1486 | 0.90[0.70,1.16] | 0.42(0.42) | 14.68 | 8(0.07) | 46% | |
| Asian | 2243 | 1358 | 1.01[0.77,1. 32] | 0.07(0.95) | 9.52 | 6(0.15) | 37% | ||
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| AA | Overall | 2498 | 1486 | 1.08[0.39,2.98] | 0.14(0.89) | 0.66 | 4(0.96) | 0% | |
| Asian | 2243 | 1358 | 1.18[0.36,3.86] | 0.27(0.79) | 0.20 | 2(0.90) | 0% | ||
| European | 255 | 128 | 0.81[0.11,6.16] | 0.20(0.84) | 0.34 | 1(0.56) | 0 | ||
*-308 A/A and -238 A/A were rare genotypes. Therefore, some studies had to be excluded because they contained no individuals carrying these genotypes. In the study on -308 AA vs. GA +GG, the report by Kummee et al [20] was excluded; in -238 GG vs. AA and -238 AA vs. GA +GG, Cheong et al [10] and Li et al [17] were excluded.
Abbreviations: CHB, chronic HBV infection; HC, HBV clearance; OR, odds ratio; CI, confidence interval; df, degree of freedom.
Figure 2OR of HBV infection associated with TNF-
Figure 3OR of HBV infection associated with TNF-
Figure 4Funnel plot analysis to examine publication bias.
Some asymmetry in -863 CC vs. AA (A) and -863 AA vs. CA+CC (A). After one study removed, the publication bias was eliminated. See -863 CC vs. AA (B) and -863 AA vs. CA+CC (B).