Literature DB >> 21571998

Complete genome sequence of Methanosaeta concilii, a specialist in aceticlastic methanogenesis.

Robert D Barber1, Liyang Zhang, Michelle Harnack, Maynard V Olson, Rajinder Kaul, Cheryl Ingram-Smith, Kerry S Smith.   

Abstract

The genome sequence of the aceticlastic methanoarchaeon Methanosaeta concilii GP6, comprised of a 3,008,626-bp chromosome and an 18,019-bp episome, has been determined and exhibits considerable differences in gene content from that of Methanosaeta thermophila.

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Year:  2011        PMID： 21571998      PMCID： PMC3133334          DOI： 10.1128/JB.05031-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

2.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

Review 4.  Methanosaeta, the forgotten methanogen?

Authors:  Kerry S Smith; Cheryl Ingram-Smith
Journal:  Trends Microbiol       Date:  2007-02-21       Impact factor: 17.079

5.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

6.  Characterization of three thermophilic strains of Methanothrix ("Methanosaeta") thermophila sp. nov. and rejection of Methanothrix ("Methanosaeta") thermoacetophila.

Authors:  Y Kamagata; H Kawasaki; H Oyaizu; K Nakamura; E Mikami; G Endo; Y Koga; K Yamasato
Journal:  Int J Syst Bacteriol       Date:  1992-07
  6 in total
  20 in total

1.  Methanogenic burst in the end-Permian carbon cycle.

Authors:  Daniel H Rothman; Gregory P Fournier; Katherine L French; Eric J Alm; Edward A Boyle; Changqun Cao; Roger E Summons
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-31       Impact factor: 11.205

2.  Aceticlastic and NaCl-requiring methanogen "Methanosaeta pelagica" sp. nov., isolated from marine tidal flat sediment.

Authors:  Koji Mori; Takao Iino; Ken-Ichiro Suzuki; Kaoru Yamaguchi; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2012-02-17       Impact factor: 4.792

3.  Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.

Authors:  Dawn E Holmes; Pravin M Shrestha; David J F Walker; Yan Dang; Kelly P Nevin; Trevor L Woodard; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

Review 4.  Physiology, Biochemistry, and Applications of F420- and Fo-Dependent Redox Reactions.

Authors:  Chris Greening; F Hafna Ahmed; A Elaaf Mohamed; Brendon M Lee; Gunjan Pandey; Andrew C Warden; Colin Scott; John G Oakeshott; Matthew C Taylor; Colin J Jackson
Journal:  Microbiol Mol Biol Rev       Date:  2016-04-27       Impact factor: 11.056

5.  Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.

Authors:  Koen H G Verschueren; Clement Blanchet; Jan Felix; Ann Dansercoer; Dirk De Vos; Yehudi Bloch; Jozef Van Beeumen; Dmitri Svergun; Irina Gutsche; Savvas N Savvides; Kenneth Verstraete
Journal:  Nature       Date:  2019-04-03       Impact factor: 49.962

6.  Cofactor F420: an expanded view of its distribution, biosynthesis and roles in bacteria and archaea.

Authors:  Rhys Grinter; Chris Greening
Journal:  FEMS Microbiol Rev       Date:  2021-09-08       Impact factor: 16.408

7.  The role of different methanogen groups evaluated by Real-Time qPCR as high-efficiency bioindicators of wet anaerobic co-digestion of organic waste.

Authors:  Deborah Traversi; Silvia Villa; Marco Acri; Biancamaria Pietrangeli; Raffaella Degan; Giorgio Gilli
Journal:  AMB Express       Date:  2011-10-07       Impact factor: 3.298

8.  Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments.

Authors:  Stephanie A Carr; Florence Schubotz; Robert B Dunbar; Christopher T Mills; Robert Dias; Roger E Summons; Kevin W Mandernack
Journal:  ISME J       Date:  2017-10-17       Impact factor: 11.217

9.  Characterization of a Methanogenic Community within an Algal Fed Anaerobic Digester.

Authors:  Joshua T Ellis; Cody Tramp; Ronald C Sims; Charles D Miller
Journal:  ISRN Microbiol       Date:  2012-06-21

10.  Acetate activation in Methanosaeta thermophila: characterization of the key enzymes pyrophosphatase and acetyl-CoA synthetase.

Authors:  Stefanie Berger; Cornelia Welte; Uwe Deppenmeier
Journal:  Archaea       Date:  2012-08-15       Impact factor: 3.273
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