Literature DB >> 21570668

Proteins move! Protein dynamics and long-range allostery in cell signaling.

Zimei Bu1, David J E Callaway.   

Abstract

An emerging point of view in protein chemistry is that proteins are not the static objects that are displayed in textbooks but are instead dynamic actors. Protein dynamics plays a fundamental role in many diseases, and spans a large hierarchy of timescales, from picoseconds to milliseconds or even longer. Nanoscale protein domain motion on length scales comparable to protein dimensions is key to understanding how signals are relayed through multiple protein-protein interactions. A canonical example is how the scaffolding proteins NHERF1 and ezrin work in coordination to assemble crucial membrane complexes. As membrane-cytoskeleton scaffolding proteins, these provide excellent prototypes for understanding how regulatory signals are relayed through protein-protein interactions between the membrane and the cytoskeleton. Here, we review recent progress in understanding the structure and dynamics of the interaction. We describe recent novel applications of neutron spin echo spectroscopy to reveal the dynamic propagation of allosteric signals by nanoscale protein motion, and present a guide to the future study of dynamics and its application to the cure of disease.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21570668     DOI: 10.1016/B978-0-12-381262-9.00005-7

Source DB:  PubMed          Journal:  Adv Protein Chem Struct Biol        ISSN: 1876-1623            Impact factor:   3.507


  32 in total

1.  Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation.

Authors:  N Smolin; R Biehl; G R Kneller; D Richter; J C Smith
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM).

Authors:  Kelin Xia; Kristopher Opron; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2015-11-28       Impact factor: 3.488

3.  Nanoscale protein dynamics: a new frontier for neutron spin echo spectroscopy.

Authors:  David J E Callaway; Bela Farago; Zimei Bu
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-17       Impact factor: 1.890

4.  Perspectives in biological physics: the nDDB project for a neutron Dynamics Data Bank for biological macromolecules.

Authors:  Leonid Rusevich; Victoria García Sakai; Bruno Franzetti; Mark Johnson; Francesca Natali; Eric Pellegrini; Judith Peters; Jörg Pieper; Martin Weik; Giuseppe Zaccai
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-17       Impact factor: 1.890

5.  Nanoscale protein domain motion and long-range allostery in signaling proteins- a view from neutron spin echo sprectroscopy.

Authors:  David J E Callaway; Zimei Bu
Journal:  Biophys Rev       Date:  2015-06

Review 6.  Understanding biochemical processes in the presence of sub-diffusive behavior of biomolecules in solution and living cells.

Authors:  Sujit Basak; Sombuddha Sengupta; Krishnananda Chattopadhyay
Journal:  Biophys Rev       Date:  2019-08-23

7.  Activated nanoscale actin-binding domain motion in the catenin-cadherin complex revealed by neutron spin echo spectroscopy.

Authors:  Bela Farago; Iain D Nicholl; Shen Wang; Xiaolin Cheng; David J E Callaway; Zimei Bu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-30       Impact factor: 11.205

8.  α-Catenin Structure and Nanoscale Dynamics in Solution and in Complex with F-Actin.

Authors:  Iain D Nicholl; Tsutomu Matsui; Thomas M Weiss; Christopher B Stanley; William T Heller; Anne Martel; Bela Farago; David J E Callaway; Zimei Bu
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

Review 9.  Visualizing the nanoscale: protein internal dynamics and neutron spin echo spectroscopy.

Authors:  David Je Callaway; Zimei Bu
Journal:  Curr Opin Struct Biol       Date:  2016-10-15       Impact factor: 6.809

Review 10.  Molecular physiology of SPAK and OSR1: two Ste20-related protein kinases regulating ion transport.

Authors:  Kenneth B Gagnon; Eric Delpire
Journal:  Physiol Rev       Date:  2012-10       Impact factor: 37.312

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