Literature DB >> 21567957

The imprint of codons on protein structure.

Charlotte M Deane1, Rhodri Saunders.   

Abstract

The "central dogma" of biology outlines the unidirectional flow of interpretable data from genetic sequence to protein sequence. This has led to the idea that a protein's structure is dependent only on its amino acid sequence and not its genetic sequence. Recently, however, a more than transient link between the coding genetic sequence and the protein structure has become apparent. The two interact at the ribosome via the process of co-translational protein folding. Evidence for co-translational folding is growing rapidly, but the influence of codons on the protein structure attained is still highly contentious. It is theorised that the speed of codon translation modulates the time available for protein folding and hence the protein structure. Here, past and present research regarding synonymous codons and codon translation speed are reviewed within the context of protein structure attainment.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID: 21567957     DOI: 10.1002/biot.201000329

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  7 in total

1.  Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events.

Authors:  Matthieu Chartier; Francis Gaudreault; Rafael Najmanovich
Journal:  Bioinformatics       Date:  2012-03-30       Impact factor: 6.937

Review 2.  Decoding mechanisms by which silent codon changes influence protein biogenesis and function.

Authors:  Vedrana Bali; Zsuzsanna Bebok
Journal:  Int J Biochem Cell Biol       Date:  2015-03-26       Impact factor: 5.085

3.  Silent substitutions predictably alter translation elongation rates and protein folding efficiencies.

Authors:  Paige S Spencer; Efraín Siller; John F Anderson; José M Barral
Journal:  J Mol Biol       Date:  2012-06-12       Impact factor: 5.469

4.  Conserved regional 3' grouping of rare codons in the coding sequence of ocular prosecretory mitogen lacritin.

Authors:  Robert L McKown; Ronald W Raab; Patricia Kachelries; Sara Caldwell; Gordon W Laurie
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-03-19       Impact factor: 4.799

5.  ATGme: Open-source web application for rare codon identification and custom DNA sequence optimization.

Authors:  Edward Daniel; Goodluck U Onwukwe; Rik K Wierenga; Susan E Quaggin; Seppo J Vainio; Mirja Krause
Journal:  BMC Bioinformatics       Date:  2015-09-21       Impact factor: 3.169

6.  Integrated analysis of individual codon contribution to protein biosynthesis reveals a new approach to improving the basis of rational gene design.

Authors:  Juan C Villada; Otávio José Bernardes Brustolini; Wendel Batista da Silveira
Journal:  DNA Res       Date:  2017-08-01       Impact factor: 4.458

Review 7.  Unified understanding of folding and binding mechanisms of globular and intrinsically disordered proteins.

Authors:  Munehito Arai
Journal:  Biophys Rev       Date:  2018-01-06
  7 in total

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