Literature DB >> 21567196

Active role of small non-coding RNAs derived from SINE/B1 retrotransposon during early mouse development.

Yusuke Ohnishi1, Yasushi Totoki, Atsushi Toyoda, Toshiaki Watanabe, Yasuhiro Yamamoto, Katsushi Tokunaga, Yoshiyuki Sakaki, Hiroyuki Sasaki, Hirohiko Hohjoh.   

Abstract

Small RNAs derived from repetitive sequences appear to play essential roles in mammalian gametogenesis and early development. In this study we focused on the short interspersed nucleotide element B1 (SINE/B1) small RNAs, which were zygotically expressed in pre-implantation mouse embryos; and we investigated whether the SINE/B1 small RNAs played an active role in gene silencing during early mouse development. The results indicated that the level of silencing activity involving the SINE/B1 small RNAs as mediators was significantly reduced in Dicer-knockdown mouse embryos. In addition, when the SINE/B1 small RNAs were mapped to a full-length SINE/B1 sequence, phase-distribution of the small RNAs appeared, suggesting possible enzymatic involvement. Therefore, our present study suggested that the zygotically expressed SINE/B1 small RNAs in pre-implantation mouse embryos contain active small RNAs, which were presumably processed by Dicer and involved in gene silencing.

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Year:  2011        PMID: 21567196     DOI: 10.1007/s11033-011-0815-1

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  19 in total

Review 1.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

2.  Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.

Authors:  Anne E Peaston; Alexei V Evsikov; Joel H Graber; Wilhelmine N de Vries; Andrea E Holbrook; Davor Solter; Barbara B Knowles
Journal:  Dev Cell       Date:  2004-10       Impact factor: 12.270

3.  Maternal microRNAs are essential for mouse zygotic development.

Authors:  Fuchou Tang; Masahiro Kaneda; Dónal O'Carroll; Petra Hajkova; Sheila C Barton; Y Andrew Sun; Caroline Lee; Alexander Tarakhovsky; Kaiqin Lao; M Azim Surani
Journal:  Genes Dev       Date:  2007-03-15       Impact factor: 11.361

4.  Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes.

Authors:  Oliver H Tam; Alexei A Aravin; Paula Stein; Angelique Girard; Elizabeth P Murchison; Sihem Cheloufi; Emily Hodges; Martin Anger; Ravi Sachidanandam; Richard M Schultz; Gregory J Hannon
Journal:  Nature       Date:  2008-04-10       Impact factor: 49.962

5.  Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes.

Authors:  Toshiaki Watanabe; Yasushi Totoki; Atsushi Toyoda; Masahiro Kaneda; Satomi Kuramochi-Miyagawa; Yayoi Obata; Hatsune Chiba; Yuji Kohara; Tomohiro Kono; Toru Nakano; M Azim Surani; Yoshiyuki Sakaki; Hiroyuki Sasaki
Journal:  Nature       Date:  2008-04-10       Impact factor: 49.962

6.  Amino acids and preimplantation development of the mouse in protein-free potassium simplex optimized medium.

Authors:  J D Biggers; L K McGinnis; M Raffin
Journal:  Biol Reprod       Date:  2000-07       Impact factor: 4.285

7.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

8.  Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs.

Authors:  Joshua E Babiarz; J Graham Ruby; Yangming Wang; David P Bartel; Robert Blelloch
Journal:  Genes Dev       Date:  2008-10-15       Impact factor: 11.361

9.  Critical roles for Dicer in the female germline.

Authors:  Elizabeth P Murchison; Paula Stein; Zhenyu Xuan; Hua Pan; Michael Q Zhang; Richard M Schultz; Gregory J Hannon
Journal:  Genes Dev       Date:  2007-03-15       Impact factor: 11.361

10.  Real-time quantification of microRNAs by stem-loop RT-PCR.

Authors:  Caifu Chen; Dana A Ridzon; Adam J Broomer; Zhaohui Zhou; Danny H Lee; Julie T Nguyen; Maura Barbisin; Nan Lan Xu; Vikram R Mahuvakar; Mark R Andersen; Kai Qin Lao; Kenneth J Livak; Karl J Guegler
Journal:  Nucleic Acids Res       Date:  2005-11-27       Impact factor: 16.971

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  12 in total

1.  Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development.

Authors:  Kenji Ichiyanagi; Yufeng Li; Yungfeng Li; Toshiaki Watanabe; Tomoko Ichiyanagi; Kei Fukuda; Junko Kitayama; Yasuhiro Yamamoto; Satomi Kuramochi-Miyagawa; Toru Nakano; Yukihiro Yabuta; Yoshiyuki Seki; Mitinori Saitou; Hiroyuki Sasaki
Journal:  Genome Res       Date:  2011-10-31       Impact factor: 9.043

2.  Dicer-dependent biogenesis of small RNAs derived from 7SL RNA.

Authors:  Yong-Feng Ren; Guiling Li; Jianmin Wu; Yong-Feng Xue; Yi-Jiang Song; Lu Lv; Xue-Jiao Zhang; Kai-Fu Tang
Journal:  PLoS One       Date:  2012-07-12       Impact factor: 3.240

Review 3.  MicroRNA-independent roles of the RNase III enzymes Drosha and Dicer.

Authors:  Timothy M Johanson; Andrew M Lew; Mark M W Chong
Journal:  Open Biol       Date:  2013-10-23       Impact factor: 6.411

4.  Glioma microvesicles carry selectively packaged coding and non-coding RNAs which alter gene expression in recipient cells.

Authors:  Cheryl C Y Li; Sally A Eaton; Paul E Young; Maggie Lee; Rupert Shuttleworth; David T Humphreys; Georges E Grau; Valery Combes; Mary Bebawy; Joyce Gong; Susan Brammah; Michael E Buckland; Catherine M Suter
Journal:  RNA Biol       Date:  2013-06-17       Impact factor: 4.652

5.  A noncoding RNA containing a SINE-B1 motif associates with meiotic metaphase chromatin and has an indispensable function during spermatogenesis.

Authors:  Ryusuke Nakajima; Takuya Sato; Takehiko Ogawa; Hideyuki Okano; Toshiaki Noce
Journal:  PLoS One       Date:  2017-06-28       Impact factor: 3.240

Review 6.  Regulating gene expression in animals through RNA endonucleolytic cleavage.

Authors:  Karen Gu; Lawrence Mok; Mark M W Chong
Journal:  Heliyon       Date:  2018-11-02

7.  Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis.

Authors:  Keith R Oliver; Wayne K Greene
Journal:  Ecol Evol       Date:  2012-10-16       Impact factor: 2.912

Review 8.  The role of dicer in DNA damage repair.

Authors:  Kai-Fu Tang; Hong Ren
Journal:  Int J Mol Sci       Date:  2012-12-07       Impact factor: 5.923

9.  The complex transcriptional landscape of the anucleate human platelet.

Authors:  Paul F Bray; Steven E McKenzie; Leonard C Edelstein; Srikanth Nagalla; Kathleen Delgrosso; Adam Ertel; Joan Kupper; Yi Jing; Eric Londin; Phillipe Loher; Huang-Wen Chen; Paolo Fortina; Isidore Rigoutsos
Journal:  BMC Genomics       Date:  2013-01-16       Impact factor: 3.969

10.  Enhancer SINEs Link Pol III to Pol II Transcription in Neurons.

Authors:  Cristina Policarpi; Luca Crepaldi; Emily Brookes; Justyna Nitarska; Sarah M French; Alessandro Coatti; Antonella Riccio
Journal:  Cell Rep       Date:  2017-12-05       Impact factor: 9.423

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