Literature DB >> 21567136

Identification of suitable reference genes for qRT-PCR analysis of circulating microRNAs in hepatitis B virus-infected patients.

Hai-Tao Zhu1, Qiong-Zhu Dong, Guan Wang, Hai-Jun Zhou, Ning Ren, Hu-Liang Jia, Qing-Hai Ye, Lun-Xiu Qin.   

Abstract

Circulating microRNAs (miRNAs) were found to exist in serum/plasma in a highly stable, cell-free form, and aberrantly expressed in many human diseases. Currently, the expression levels of circulating miRNAs are estimated by quantitative real-time polymerase chain reaction. However, no study has systematically evaluated reference genes for evaluating circulating microRNA expression. This study describes the identification and characterization of an appropriate reference gene for the normalization of circulating miRNA levels in hepatitis B virus (HBV)-infected patients and healthy people. Ten miRNAs that resemble the mean expression of the TaqMan low density array together with U6, RNU6B, and miR-16 were validated with two algorithms, geNorm, and NormFinder, after ensuring their equivalent expression between the two study groups. The combination of miR-26a, miR-221, and miR-22* is recommended as the most stable set of reference genes for circulating miRNA evaluation in HBV patients and healthy people.

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Year:  2012        PMID: 21567136     DOI: 10.1007/s12033-011-9414-6

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  29 in total

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Authors:  Nobuyoshi Kosaka; Haruhisa Iguchi; Takahiro Ochiya
Journal:  Cancer Sci       Date:  2010-07-07       Impact factor: 6.716

2.  Equivalence test in quantitative reverse transcription polymerase chain reaction: confirmation of reference genes suitable for normalization.

Authors:  Florian Haller; Bettina Kulle; Stefanie Schwager; Bastian Gunawan; Anja von Heydebreck; Holger Sültmann; László Füzesi
Journal:  Anal Biochem       Date:  2004-12-01       Impact factor: 3.365

3.  How to do successful gene expression analysis using real-time PCR.

Authors:  Stefaan Derveaux; Jo Vandesompele; Jan Hellemans
Journal:  Methods       Date:  2009-12-05       Impact factor: 3.608

4.  A translational study of circulating cell-free microRNA-1 in acute myocardial infarction.

Authors:  Yunhui Cheng; Ning Tan; Jian Yang; Xiaojun Liu; Xiaopei Cao; Pengcheng He; Xiaoli Dong; Shanshan Qin; Chunxiang Zhang
Journal:  Clin Sci (Lond)       Date:  2010-04-20       Impact factor: 6.124

5.  Identification of tissue-specific microRNAs from mouse.

Authors:  Mariana Lagos-Quintana; Reinhard Rauhut; Abdullah Yalcin; Jutta Meyer; Winfried Lendeckel; Thomas Tuschl
Journal:  Curr Biol       Date:  2002-04-30       Impact factor: 10.834

6.  miR-122-induced down-regulation of HO-1 negatively affects miR-122-mediated suppression of HBV.

Authors:  Lipeng Qiu; Hongxia Fan; Wensong Jin; Bao Zhao; Yanzhong Wang; Ying Ju; Lizhao Chen; Yu Chen; Zhongping Duan; Songdong Meng
Journal:  Biochem Biophys Res Commun       Date:  2010-07-13       Impact factor: 3.575

7.  Differential microRNA expression between hepatitis B and hepatitis C leading disease progression to hepatocellular carcinoma.

Authors:  Shunsuke Ura; Masao Honda; Taro Yamashita; Teruyuki Ueda; Hajime Takatori; Ryuhei Nishino; Hajime Sunakozaka; Yoshio Sakai; Katsuhisa Horimoto; Shuichi Kaneko
Journal:  Hepatology       Date:  2009-04       Impact factor: 17.425

8.  Circulating microRNAs in plasma of patients with gastric cancers.

Authors:  M Tsujiura; D Ichikawa; S Komatsu; A Shiozaki; H Takeshita; T Kosuga; H Konishi; R Morimura; K Deguchi; H Fujiwara; K Okamoto; E Otsuji
Journal:  Br J Cancer       Date:  2010-03-16       Impact factor: 7.640

9.  Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues.

Authors:  Heidi J Peltier; Gary J Latham
Journal:  RNA       Date:  2008-03-28       Impact factor: 4.942

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

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  35 in total

1.  Identification of suitable reference genes for qPCR analysis of serum microRNA in gastric cancer patients.

Authors:  Jianning Song; Zhigang Bai; Wei Han; Jun Zhang; Hua Meng; Jintao Bi; Xuemei Ma; Shiwei Han; Zhongtao Zhang
Journal:  Dig Dis Sci       Date:  2011-12-25       Impact factor: 3.199

2.  Probe-based Real-time PCR Approaches for Quantitative Measurement of microRNAs.

Authors:  Wilson Wong; Ryan Farr; Mugdha Joglekar; Andrzej Januszewski; Anandwardhan Hardikar
Journal:  J Vis Exp       Date:  2015-04-14       Impact factor: 1.355

3.  Cellular or Exosomal microRNAs Associated with CCN Gene Expression in Liver Fibrosis.

Authors:  Li Chen; David R Brigstock
Journal:  Methods Mol Biol       Date:  2017

4.  Identification of suitable reference microRNA for qPCR analysis in pediatric inflammatory bowel disease.

Authors:  Christie Buonpane; Guillermo Ares; Beshoy Benyamen; Carrie Yuan; Catherine J Hunter
Journal:  Physiol Genomics       Date:  2019-04-12       Impact factor: 3.107

5.  Standardizing analysis of circulating microRNA: clinical and biological relevance.

Authors:  Nicholas H Farina; Marie E Wood; Scott D Perrapato; Christopher S Francklyn; Gary S Stein; Janet L Stein; Jane B Lian
Journal:  J Cell Biochem       Date:  2014-05       Impact factor: 4.429

Review 6.  Epigenetic biomarkers: Current strategies and future challenges for their use in the clinical laboratory.

Authors:  José Luis García-Giménez; Marta Seco-Cervera; Trygve O Tollefsbol; Carlos Romá-Mateo; Lorena Peiró-Chova; Pablo Lapunzina; Federico V Pallardó
Journal:  Crit Rev Clin Lab Sci       Date:  2017-12-11       Impact factor: 6.250

7.  Altered microRNA expression signature in Chikungunya-infected mammalian fibroblast cells.

Authors:  Deepti Parashar; Mandar S Paingankar; Ashwini More; Poonam Patil; Sarika Amdekar
Journal:  Virus Genes       Date:  2018-06-05       Impact factor: 2.332

8.  Sensitive PCR-based quantitation of cell-free circulating microRNAs.

Authors:  Michelle L Hastings; Jaime Palma; Dominik M Duelli
Journal:  Methods       Date:  2012-08-03       Impact factor: 3.608

Review 9.  Data Normalization Strategies for MicroRNA Quantification.

Authors:  Heidi Schwarzenbach; Andreia Machado da Silva; George Calin; Klaus Pantel
Journal:  Clin Chem       Date:  2015-09-25       Impact factor: 8.327

10.  Identification of Suitable Endogenous Normalizers for qRT-PCR Analysis of Plasma microRNA Expression in Essential Hypertension.

Authors:  Mohamed Hassan M Solayman; Taimour Langaee; Archanakumari Patel; Lamia El-Wakeel; Manal El-Hamamsy; Osama Badary; Julie A Johnson
Journal:  Mol Biotechnol       Date:  2016-03       Impact factor: 2.695

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