Literature DB >> 21565076

pedantics: an r package for pedigree-based genetic simulation and pedigree manipulation, characterization and viewing.

Michael B Morrissey1, Alastair J Wilson.   

Abstract

Analyses of pedigrees and pedigree-derived parameters (e.g. relatedness and fitness) provide some of the most informative types of studies in evolutionary biology. The r package pedantics implements tools to facilitate power and sensitivity analyses of pedigree-related studies of natural populations. Functions are available to permute pedigree data in various ways with the goal of mimicking patterns of pedigree errors and missingness that occur in studies of natural populations. Another set of functions simulates genetic and phenotypic data based on arbitrary pedigrees. Finally, functions are also available with which visual and numerical representations of pedigree structure can be generated.
© 2009 Blackwell Publishing Ltd.

Entities:  

Year:  2009        PMID: 21565076     DOI: 10.1111/j.1755-0998.2009.02817.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  42 in total

1.  Mother-offspring and nest-mate resemblance but no heritability in early-life telomere length in white-throated dippers.

Authors:  Philipp J J Becker; Sophie Reichert; Sandrine Zahn; Johann Hegelbach; Sylvie Massemin; Lukas F Keller; Erik Postma; François Criscuolo
Journal:  Proc Biol Sci       Date:  2015-05-22       Impact factor: 5.349

2.  An assessment of the reliability of quantitative genetics estimates in study systems with high rate of extra-pair reproduction and low recruitment.

Authors:  A Bourret; D Garant
Journal:  Heredity (Edinb)       Date:  2016-10-26       Impact factor: 3.821

3.  Environmental and genetic determinants of innovativeness in a natural population of birds.

Authors:  John L Quinn; Ella F Cole; Thomas E Reed; Julie Morand-Ferron
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-03-19       Impact factor: 6.237

4.  Estimation of genealogical coancestry in plant species using a pedigree reconstruction algorithm and application to an oil palm breeding population.

Authors:  David Cros; Leopoldo Sánchez; Benoit Cochard; Patrick Samper; Marie Denis; Jean-Marc Bouvet; Jesús Fernández
Journal:  Theor Appl Genet       Date:  2014-02-07       Impact factor: 5.699

5.  Disentangling the effect of genes, the environment and chance on sex ratio variation in a wild bird population.

Authors:  Erik Postma; Franziska Heinrich; Ursina Koller; Rebecca J Sardell; Jane M Reid; Peter Arcese; Lukas F Keller
Journal:  Proc Biol Sci       Date:  2011-02-23       Impact factor: 5.349

6.  First genealogy for a wild marine fish population reveals multigenerational philopatry.

Authors:  Océane C Salles; Benoit Pujol; Jeffrey A Maynard; Glenn R Almany; Michael L Berumen; Geoffrey P Jones; Pablo Saenz-Agudelo; Maya Srinivasan; Simon R Thorrold; Serge Planes
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

7.  Alternative life histories in the Atlantic salmon: genetic covariances within the sneaker sexual tactic in males.

Authors:  David James Páez; Louis Bernatchez; Julian J Dodson
Journal:  Proc Biol Sci       Date:  2010-12-22       Impact factor: 5.349

8.  Applying Quantitative Genetic Methods to Primate Social Behavior.

Authors:  Gregory E Blomquist; Lauren J N Brent
Journal:  Int J Primatol       Date:  2014-02-01       Impact factor: 2.264

9.  Inbreeding depression across the lifespan in a wild mammal population.

Authors:  Jisca Huisman; Loeske E B Kruuk; Philip A Ellis; Tim Clutton-Brock; Josephine M Pemberton
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-15       Impact factor: 11.205

10.  Multivariate heredity of melanin-based coloration, body mass and immunity.

Authors:  S-Y Kim; J A Fargallo; P Vergara; J Martínez-Padilla
Journal:  Heredity (Edinb)       Date:  2013-04-17       Impact factor: 3.821

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