Literature DB >> 21565049

Searching for DNA in museum specimens: a comparison of sources in a mammal species.

M Casas-Marce1, E Revilla, J A Godoy.   

Abstract

The number of genetic studies that use preserved specimens as sources of DNA has been steadily increasing during the last few years. Therefore, selecting the sources that are more likely to provide a suitable amount of DNA of enough quality to be amplified and at the minimum cost to the original specimen is an important step for future research. We have compared different types of tissue (hides vs. bones) from museum specimens of Iberian lynx and multiple alternative sources within each type (skin, footpad, footpad powder, claw, diaphysis, maxilloturbinal bone, mastoid process and canine) for DNA yield and probability of amplification of both mitochondrial and nuclear targets. Our results show that bone samples yield more and better DNA than hides, particularly from sources from skull, such as mastoid process and canines. However, claws offer an amplification success as high as bone sources, which makes them the preferred DNA source when no skeletal pieces have been preserved. Most importantly, these recommended sources can be sampled incurring minimal damage to the specimens while amplifying at a high success rate for both mitochondrial and microsatellite markers.
© 2009 Blackwell Publishing Ltd.

Entities:  

Year:  2009        PMID: 21565049     DOI: 10.1111/j.1755-0998.2009.02784.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  9 in total

1.  The use of museum specimens with high-throughput DNA sequencers.

Authors:  Andrew S Burrell; Todd R Disotell; Christina M Bergey
Journal:  J Hum Evol       Date:  2014-12-18       Impact factor: 3.895

2.  Demographic history of an elusive carnivore: using museums to inform management.

Authors:  Joseph D Holbrook; Randy W Deyoung; Michael E Tewes; John H Young
Journal:  Evol Appl       Date:  2012-02-07       Impact factor: 5.183

3.  Living on the edge: reconstructing the genetic history of the Finnish wolf population.

Authors:  Eeva Jansson; Jenni Harmoinen; Minna Ruokonen; Jouni Aspi
Journal:  BMC Evol Biol       Date:  2014-03-28       Impact factor: 3.260

Review 4.  Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles.

Authors:  Eleanor Joan Green; Camilla F Speller
Journal:  Genes (Basel)       Date:  2017-07-13       Impact factor: 4.096

5.  Uncovering the genomic and metagenomic research potential in old ethanol-preserved snakes.

Authors:  Claus M Zacho; Martina A Bager; Ashot Margaryan; Peter Gravlund; Anders Galatius; Arne R Rasmussen; Morten E Allentoft
Journal:  PLoS One       Date:  2021-08-23       Impact factor: 3.240

6.  An Analysis of Factors Affecting Genotyping Success from Museum Specimens Reveals an Increase of Genetic and Morphological Variation during a Historical Range Expansion of a European Spider.

Authors:  Henrik Krehenwinkel; Stano Pekar
Journal:  PLoS One       Date:  2015-08-26       Impact factor: 3.240

7.  High efficiency protocol of DNA extraction from Micromys minutus mandibles from owl pellets: a tool for molecular research of cryptic mammal species.

Authors:  Magdalena M Buś; Michał Zmihorski; Jerzy Romanowski; Laima Balčiauskienė; Jan Cichocki; Linas Balčiauskas
Journal:  Acta Theriol (Warsz)       Date:  2013-05-10

8.  Molecular markers in keratins from Mysticeti whales for species identification of baleen in museum and archaeological collections.

Authors:  Caroline Solazzo; William Fitzhugh; Susan Kaplan; Charles Potter; Jolon M Dyer
Journal:  PLoS One       Date:  2017-08-30       Impact factor: 3.240

9.  Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA.

Authors:  Mireia Casas-Marce; Elena Marmesat; Laura Soriano; Begoña Martínez-Cruz; Maria Lucena-Perez; Francisco Nocete; Antonio Rodríguez-Hidalgo; Antoni Canals; Jordi Nadal; Cleia Detry; Eloísa Bernáldez-Sánchez; Carlos Fernández-Rodríguez; Manuel Pérez-Ripoll; Mathias Stiller; Michael Hofreiter; Alejandro Rodríguez; Eloy Revilla; Miguel Delibes; José A Godoy
Journal:  Mol Biol Evol       Date:  2017-11-01       Impact factor: 16.240

  9 in total

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