Literature DB >> 21564993

Tissue-direct PCR, a rapid and extraction-free method for barcoding of ferns.

F-W Li1, L-Y Kuo, Y-M Huang, W-L Chiou, C-N Wang.   

Abstract

Fern gametophytes and young sporophytes often provide too little material for DNA extraction and are particularly difficult to identify to genus. Here we developed an efficient procedure called 'Tissue-direct PCR', in which a slice of fern tissue is mixed with PCR reagents and primers, allowing certain genomic regions to be amplified directly in the thermal cycler. For these diminutive and featureless stages of ferns, Tissue-direct PCR combined with amplifying plant barcodes promises to make the identification of immature ferns easy and rapid. Tissue-direct PCR would also be very helpful for large-scale ecological studies surveying distribution and population structure.
© 2009 Blackwell Publishing Ltd.

Year:  2009        PMID: 21564993     DOI: 10.1111/j.1755-0998.2009.02745.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  14 in total

1.  trnL-F is a powerful marker for DNA identification of field vittarioid gametophytes (Pteridaceae).

Authors:  Cheng Wei Chen; Yao Moan Huang; Li Yaung Kuo; Quoc Dat Nguyen; Hong Truong Luu; John Rey Callado; Donald R Farrar; Wen Liang Chiou
Journal:  Ann Bot       Date:  2013-02-03       Impact factor: 4.357

2.  End of an enigma: Aenigmopteris belongs in Tectaria (Tectariaceae: Polypodiopsida).

Authors:  Cheng-Wei Chen; Carl J Rothfels; Andi Maryani A Mustapeng; Markus Gubilil; Dirk Nikolaus Karger; Michael Kessler; Yao-Moan Huang
Journal:  J Plant Res       Date:  2017-07-24       Impact factor: 2.629

3.  rbcL and matK earn two thumbs up as the core DNA barcode for ferns.

Authors:  Fay-Wei Li; Li-Yaung Kuo; Carl J Rothfels; Atsushi Ebihara; Wen-Liang Chiou; Michael D Windham; Kathleen M Pryer
Journal:  PLoS One       Date:  2011-10-20       Impact factor: 3.240

4.  Use of rbcL and trnL-F as a two-locus DNA barcode for identification of NW-European ferns: an ecological perspective.

Authors:  G Arjen de Groot; Heinjo J During; Jan W Maas; Harald Schneider; Johannes C Vogel; Roy H J Erkens
Journal:  PLoS One       Date:  2011-01-26       Impact factor: 3.240

5.  Applying DNA Barcodes to Identify Closely Related Species of Ferns: A Case Study of the Chinese Adiantum (Pteridaceae).

Authors:  Fan-Hong Wang; Jin-Mei Lu; Jun Wen; Atsushi Ebihara; De-Zhu Li
Journal:  PLoS One       Date:  2016-09-07       Impact factor: 3.240

6.  Phylogenetic analyses place the monotypic Dryopolystichum within Lomariopsidaceae.

Authors:  Cheng-Wei Chen; Michael Sundue; Li-Yaung Kuo; Wei-Chih Teng; Yao-Moan Huang
Journal:  PhytoKeys       Date:  2017-04-07       Impact factor: 1.635

7.  DNA Barcoding of Online Herbal Supplements: Crowd-sourcing Pharmacovigilance in High School.

Authors:  Jeanmaire Molina; Chhoti Sherpa; Joyee Ng; Tenzin Sonam; Nicole Stuhr
Journal:  Open Life Sci       Date:  2018-04-06       Impact factor: 0.938

8.  How to open the treasure chest? Optimising DNA extraction from herbarium specimens.

Authors:  Tiina Särkinen; Martijn Staats; James E Richardson; Robyn S Cowan; Freek T Bakker
Journal:  PLoS One       Date:  2012-08-28       Impact factor: 3.240

9.  Organelle Genome Inheritance in Deparia Ferns (Athyriaceae, Aspleniineae, Polypodiales).

Authors:  Li-Yaung Kuo; Te-Yen Tang; Fay-Wei Li; Huei-Jiun Su; Wen-Liang Chiou; Yao-Moan Huang; Chun-Neng Wang
Journal:  Front Plant Sci       Date:  2018-04-13       Impact factor: 5.753

10.  Rapid and Simple Species Identification of Cicada Exuviae Using COI-Based SCAR Assay.

Authors:  Pureum Noh; Wook Jin Kim; Jun-Ho Song; Inkyu Park; Goya Choi; Byeong Cheol Moon
Journal:  Insects       Date:  2020-03-06       Impact factor: 2.769

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