Literature DB >> 21564980

DNA barcode accumulation curves for understudied taxa and areas.

M Alex Smith1, Jose Fernandez-Triana, Rob Roughley, Paul D N Hebert.   

Abstract

Frequently, the diversity of umbrella taxa is invoked to predict patterns of other, less well-known, life. However, the utility of this strategy has been questioned. We tested whether a phylogenetic diversity (PD) analysis of CO1 DNA barcodes could act as a proxy for standard methods of determining sampling efficiency within and between sites, namely that an accumulation curve of barcode diversity would be similar to curves generated using morphology or nuclear genetic markers. Using taxa at the forefront of the taxonomic impediment - parasitoid wasps (Ichneumonidae, Braconidae, Cynipidae and Diapriidae), contrasted with a taxon expected to be of low diversity (Formicidae) from an area where total diversity is expected to be low (Churchill, Manitoba), we found that barcode accumulation curves based on PD were significantly different in both slope and scale from curves generated using names based on morphological data, while curves generated using nuclear genetic data were only different in scale. We conclude that these differences clearly identify the taxonomic impediment within the strictly morphological alpha-taxonomy of these hyperdiverse insects. The absence of an asymptote within the barcode PD trend of parasitoid wasps reflects the as yet incomplete sampling of the site (and more accurately its total diversity), while the morphological analysis asymptote represents a collision with the taxonomic impediment rather than complete sampling. We conclude that a PD analysis of standardized DNA barcodes can be a transparent and reproducible triage tool for the management and conservation of species and spaces.
© 2009 Blackwell Publishing Ltd.

Entities:  

Year:  2009        PMID: 21564980     DOI: 10.1111/j.1755-0998.2009.02646.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  31 in total

1.  Unprecedented ichneumonid parasitoid wasp diversity in tropical forests.

Authors:  Anu Veijalainen; Niklas Wahlberg; Gavin R Broad; Terry L Erwin; John T Longino; Ilari E Sääksjärvi
Journal:  Proc Biol Sci       Date:  2012-10-03       Impact factor: 5.349

2.  Twenty-two new species in the genus Hyphantrophaga Townsend (Diptera: Tachinidae) from Area de Conservación Guanacaste, with a key to the species of Mesoamerica.

Authors:  A J Fleming; D Monty Wood; M Alex Smith; Tanya Dapkey; Winnie Hallwachs; Daniel Janzen
Journal:  Biodivers Data J       Date:  2019-06-28

3.  Host tracking or cryptic adaptation? Phylogeography of Pediobius saulius (Hymenoptera, Eulophidae), a parasitoid of the highly invasive horse-chestnut leafminer.

Authors:  Antonio Hernández-López; Rodolphe Rougerie; Sylvie Augustin; David C Lees; Rumen Tomov; Marc Kenis; Ejup Çota; Endrit Kullaj; Christer Hansson; Giselher Grabenweger; Alain Roques; Carlos López-Vaamonde
Journal:  Evol Appl       Date:  2011-12-03       Impact factor: 5.183

4.  Insights into biodiversity sampling strategies for freshwater microinvertebrate faunas through bioblitz campaigns and DNA barcoding.

Authors:  Brandon J Laforest; Amanda K Winegardner; Omar A Zaheer; Nicholas W Jeffery; Elizabeth E Boyle; Sarah J Adamowicz
Journal:  BMC Ecol       Date:  2013-04-04       Impact factor: 2.964

5.  Quantifying species diversity with a DNA barcoding-based method: Tibetan moth species (Noctuidae) on the Qinghai-Tibetan Plateau.

Authors:  Qian Jin; Huilin Han; XiMin Hu; XinHai Li; ChaoDong Zhu; Simon Y W Ho; Robert D Ward; Ai-bing Zhang
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

6.  Invasions, DNA barcodes, and rapid biodiversity assessment using ants of Mauritius.

Authors:  M Alex Smith; Brian L Fisher
Journal:  Front Zool       Date:  2009-12-10       Impact factor: 3.172

7.  Revision of Telothyria van der Wulp (Diptera: Tachinidae) and twenty-five new species from Area de Conservación Guanacaste in northwestern Costa Rica with a key to Mesoamerican species.

Authors:  A J Fleming; D Monty Wood; M Alex Smith; Tanya Dapkey; Winnie Hallwachs; Daniel Janzen
Journal:  Biodivers Data J       Date:  2020-04-28

8.  Revealing the hyperdiverse mite fauna of subarctic Canada through DNA barcoding.

Authors:  Monica R Young; Valerie M Behan-Pelletier; Paul D N Hebert
Journal:  PLoS One       Date:  2012-11-02       Impact factor: 3.240

9.  DNA barcoding reveals diversity of Hymenoptera and the dominance of parasitoids in a sub-arctic environment.

Authors:  Julie K Stahlhut; José Fernández-Triana; Sarah J Adamowicz; Matthias Buck; Henri Goulet; Paul D N Hebert; John T Huber; Mark T Merilo; Cory S Sheffield; Thomas Woodcock; M Alex Smith
Journal:  BMC Ecol       Date:  2013-01-26       Impact factor: 2.964

10.  DNA barcoding of Northern Nearctic Muscidae (Diptera) reveals high correspondence between morphological and molecular species limits.

Authors:  Anaïs K Renaud; Jade Savage; Sarah J Adamowicz
Journal:  BMC Ecol       Date:  2012-11-23       Impact factor: 2.964

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