Literature DB >> 21564968

Progress towards DNA barcoding of fungi.

Keith A Seifert1.   

Abstract

The use of DNA sequences for identifying fungi and fungus-like organisms predates the DNA barcoding movement by at least 10 years. A brief overview of the mycological shift from phenotypic to molecular taxonomy is provided. Exploration of the animal barcode marker, cytochrome oxidase 1, by Canadian mycologists has been fruitful for some fungi, but intron issues and lack of resolution in other taxa prevent its universal application. The momentum established by 15 years of research on the fungal nuclear ribosomal internal transcribed spacer (ITS) sequences will lead to a proposal to the Consortium for the Barcode of Life on the adoption of this marker as the fungal barcode. Existing mycological research networks should facilitate the rapid development of DNA barcoding of fungi once the marker issue is settled. Some available online fungal identification databases are briefly described.
© 2009 Crown in the right of Canada.

Year:  2009        PMID: 21564968     DOI: 10.1111/j.1755-0998.2009.02635.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  92 in total

1.  Internet-accessible DNA sequence database for identifying fusaria from human and animal infections.

Authors:  Kerry O'Donnell; Deanna A Sutton; Michael G Rinaldi; Brice A J Sarver; S Arunmozhi Balajee; Hans-Josef Schroers; Richard C Summerbell; Vincent A R G Robert; Pedro W Crous; Ning Zhang; Takayuki Aoki; Kyongyong Jung; Jongsun Park; Yong-Hwan Lee; Seogchan Kang; Bongsoo Park; David M Geiser
Journal:  J Clin Microbiol       Date:  2010-08-04       Impact factor: 5.948

2.  Promotion of Mn(II) oxidation and remediation of coal mine drainage in passive treatment systems by diverse fungal and bacterial communities.

Authors:  Cara M Santelli; Donald H Pfister; Dana Lazarus; Lu Sun; William D Burgos; Colleen M Hansel
Journal:  Appl Environ Microbiol       Date:  2010-05-21       Impact factor: 4.792

3.  Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera.

Authors:  M M Aveskamp; J de Gruyter; J H C Woudenberg; G J M Verkley; P W Crous
Journal:  Stud Mycol       Date:  2010       Impact factor: 16.097

Review 4.  Variation of rDNA Internal Transcribed Spacer Sequences in Rhizoctonia cerealis.

Authors:  Lei Ji; Chunju Liu; Li Zhang; Aixin Liu; Jinfeng Yu
Journal:  Curr Microbiol       Date:  2017-05-05       Impact factor: 2.188

5.  Novel species of Mycosphaerellaceae and Teratosphaeriaceae.

Authors:  P W Crous; B A Summerell; A J Carnegie; M J Wingfield; J Z Groenewald
Journal:  Persoonia       Date:  2009-10-29       Impact factor: 11.051

Review 6.  Advances in taxonomy of genus phoma: polyphyletic nature and role of phenotypic traits and molecular systematics.

Authors:  Mahendra Kumar Rai; Vaibhav V Tiwari; László Irinyi; György János Kövics
Journal:  Indian J Microbiol       Date:  2013-12-04       Impact factor: 2.461

Review 7.  Next-Generation Sequencing: A Review of Technologies and Tools for Wound Microbiome Research.

Authors:  Brendan P Hodkinson; Elizabeth A Grice
Journal:  Adv Wound Care (New Rochelle)       Date:  2015-01-01       Impact factor: 4.730

8.  A class-wide phylogenetic assessment of Dothideomycetes.

Authors:  C L Schoch; P W Crous; J Z Groenewald; E W A Boehm; T I Burgess; J de Gruyter; G S de Hoog; L J Dixon; M Grube; C Gueidan; Y Harada; S Hatakeyama; K Hirayama; T Hosoya; S M Huhndorf; K D Hyde; E B G Jones; J Kohlmeyer; A Kruys; Y M Li; R Lücking; H T Lumbsch; L Marvanová; J S Mbatchou; A H McVay; A N Miller; G K Mugambi; L Muggia; M P Nelsen; P Nelson; C A Owensby; A J L Phillips; S Phongpaichit; S B Pointing; V Pujade-Renaud; H A Raja; E Rivas Plata; B Robbertse; C Ruibal; J Sakayaroj; T Sano; L Selbmann; C A Shearer; T Shirouzu; B Slippers; S Suetrong; K Tanaka; B Volkmann-Kohlmeyer; M J Wingfield; A R Wood; J H C Woudenberg; H Yonezawa; Y Zhang; J W Spatafora
Journal:  Stud Mycol       Date:  2009       Impact factor: 16.097

9.  Myrtaceae, a cache of fungal biodiversity.

Authors:  R Cheewangkoon; J Z Groenewald; B A Summerell; K D Hyde; C To-Anun; P W Crous
Journal:  Persoonia       Date:  2009-09-10       Impact factor: 11.051

10.  ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ).

Authors:  Martin Wiemers; Alexander Keller; Matthias Wolf
Journal:  BMC Evol Biol       Date:  2009-12-26       Impact factor: 3.260

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.