Literature DB >> 21564961

The front-end logistics of DNA barcoding: challenges and prospects.

Alex V Borisenko1, Jayme E Sones, Paul D N Hebert.   

Abstract

Building a global library of DNA barcodes will require efficient logistics of pre-laboratory specimen processing and seamless interfacing with molecular protocols. If not addressed properly, the task of aggregating specimens may become the biggest bottleneck in the analytical chain. Three years of experience in developing a collection management system to facilitate high-throughput DNA barcoding have allowed the Canadian Centre for DNA Barcoding to recognize and resolve the most common logistical obstacles. Dealing with these challenges on a larger scale will be an important step towards building a solid collection-based foundation for the international DNA barcoding effort.
© 2009 Blackwell Publishing Ltd.

Year:  2009        PMID: 21564961     DOI: 10.1111/j.1755-0998.2009.02629.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  15 in total

1.  Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama.

Authors:  Andrew J Crawford; Karen R Lips; Eldredge Bermingham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

2.  Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species.

Authors: 
Journal:  J Hered       Date:  2009-11-05       Impact factor: 2.645

3.  Performance of two Southern California benthic community condition indices using species abundance and presence-only data: relevance to DNA barcoding.

Authors:  J Ananda Ranasinghe; Eric D Stein; Peter E Miller; Stephen B Weisberg
Journal:  PLoS One       Date:  2012-08-07       Impact factor: 3.240

4.  Is DNA barcoding actually cheaper and faster than traditional morphological methods: results from a survey of freshwater bioassessment efforts in the United States?

Authors:  Eric D Stein; Maria C Martinez; Sara Stiles; Peter E Miller; Evgeny V Zakharov
Journal:  PLoS One       Date:  2014-04-22       Impact factor: 3.240

5.  Complete chloroplast genome sequences of Dioscorea: Characterization, genomic resources, and phylogenetic analyses.

Authors:  Zhenyu Zhao; Xin Wang; Yi Yu; Subo Yuan; Dan Jiang; Yujun Zhang; Teng Zhang; Wenhao Zhong; Qingjun Yuan; Luqi Huang
Journal:  PeerJ       Date:  2018-12-04       Impact factor: 2.984

Review 6.  Generating DNA sequence data with limited resources for molecular biology: Lessons from a barcoding project in Indonesia.

Authors:  Gillian H Dean; Rani Asmarayani; Marlina Ardiyani; Yessi Santika; Teguh Triono; Sarah Mathews; Campbell O Webb
Journal:  Appl Plant Sci       Date:  2018-07-13       Impact factor: 1.936

7.  Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates.

Authors:  Eric D Stein; Bryan P White; Raphael D Mazor; Peter E Miller; Erik M Pilgrim
Journal:  PLoS One       Date:  2013-01-04       Impact factor: 3.240

8.  A DNA 'barcode blitz': rapid digitization and sequencing of a natural history collection.

Authors:  Paul D N Hebert; Jeremy R Dewaard; Evgeny V Zakharov; Sean W J Prosser; Jayme E Sones; Jaclyn T A McKeown; Beth Mantle; John La Salle
Journal:  PLoS One       Date:  2013-07-10       Impact factor: 3.240

9.  Spiders (Araneae) of Churchill, Manitoba: DNA barcodes and morphology reveal high species diversity and new Canadian records.

Authors:  Gergin A Blagoev; Nadya I Nikolova; Crystal N Sobel; Paul D N Hebert; Sarah J Adamowicz
Journal:  BMC Ecol       Date:  2013-11-26       Impact factor: 2.964

10.  DNA Barcode Authentication and Library Development for the Wood of Six Commercial Pterocarpus Species: the Critical Role of Xylarium Specimens.

Authors:  Lichao Jiao; Min Yu; Alex C Wiedenhoeft; Tuo He; Jianing Li; Bo Liu; Xiaomei Jiang; Yafang Yin
Journal:  Sci Rep       Date:  2018-01-31       Impact factor: 4.379

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