Literature DB >> 21564735

SPAms: A user-friendly software to simulate population genetics data under complex demographic models.

B Parreira1, M Trussart, V Sousa, R Hudson, L Chikhi.   

Abstract

Patterns of genetic diversity can be used to reconstruct populations demographic history. Thus, it is crucial to understand the statistical properties of data sets generated under different scenarios. SPAms is a graphical application that allows the simulation of data under a set of demographic models of increasing complexity: (i) population size change (ii) admixture and (iii) population structure (n-island or stepping stone model). SPAms generates data under the infinite site and the stepwise mutation models and computes a set of commonly used statistics. It should thus be a useful tool for both research and teaching purposes.
© 2009 Blackwell Publishing Ltd.

Year:  2009        PMID: 21564735     DOI: 10.1111/j.1755-0998.2009.02533.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  3 in total

1.  On some genetic consequences of social structure, mating systems, dispersal, and sampling.

Authors:  Bárbara R Parreira; Lounès Chikhi
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-16       Impact factor: 11.205

2.  Simulation of genes and genomes forward in time.

Authors:  Antonio Carvajal-Rodríguez
Journal:  Curr Genomics       Date:  2010-03       Impact factor: 2.236

3.  Molecular insights into the historic demography of bowhead whales: understanding the evolutionary basis of contemporary management practices.

Authors:  C D Phillips; J I Hoffman; J C George; R S Suydam; R M Huebinger; J C Patton; J W Bickham
Journal:  Ecol Evol       Date:  2012-11-26       Impact factor: 2.912

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.