Literature DB >> 21564572

BPSI2.0: a C/C++ interface program for species identification via DNA barcoding with a BP-neural network by calling the Matlab engine.

A B Zhang1, P Savolainen.   

Abstract

BP-Species Identification (BPSI2.0) is a computer program that performs species identification by training a Back-Propagation Neural Network. A short DNA barcoding segment is used as input for training a three-layer BP network. The trained network can assign an unknown query sequence to a known species in the user's database, and provide the corresponding subvector value of the output vector as a relative probability value.
© 2008 The Authors. Journal compilation © 2008 Blackwell Publishing Ltd.

Entities:  

Year:  2008        PMID: 21564572     DOI: 10.1111/j.1755-0998.2008.02372.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  5 in total

1.  Phylogenetic reconstruction and DNA barcoding for closely related pine moth species (Dendrolimus) in China with multiple gene markers.

Authors:  Qing-Yan Dai; Qiang Gao; Chun-Sheng Wu; Douglas Chesters; Chao-Dong Zhu; Ai-Bing Zhang
Journal:  PLoS One       Date:  2012-04-03       Impact factor: 3.240

2.  A new method for species identification via protein-coding and non-coding DNA barcodes by combining machine learning with bioinformatic methods.

Authors:  Ai-bing Zhang; Jie Feng; Robert D Ward; Ping Wan; Qiang Gao; Jun Wu; Wei-zhong Zhao
Journal:  PLoS One       Date:  2012-02-20       Impact factor: 3.240

3.  Identifying species of moths (Lepidoptera) from Baihua Mountain, Beijing, China, using DNA barcodes.

Authors:  Xiao F Liu; Cong H Yang; Hui L Han; Robert D Ward; Ai-Bing Zhang
Journal:  Ecol Evol       Date:  2014-05-20       Impact factor: 2.912

4.  funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model.

Authors:  Prabina Kumar Meher; Tanmaya Kumar Sahu; Shachi Gahoi; Ruchi Tomar; Atmakuri Ramakrishna Rao
Journal:  BMC Genet       Date:  2019-01-07       Impact factor: 2.797

5.  DNA barcoding and species boundary delimitation of selected species of Chinese Acridoidea (Orthoptera: Caelifera).

Authors:  Jianhua Huang; Aibing Zhang; Shaoli Mao; Yuan Huang
Journal:  PLoS One       Date:  2013-12-20       Impact factor: 3.240

  5 in total

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