Literature DB >> 21557749

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities.

R Henrik Nilsson1,2,3, Leho Tedersoo2,4, Björn D Lindahl5, Rasmus Kjøller6, Tor Carlsen7, Christopher Quince8, Kessy Abarenkov2, Taina Pennanen9, Jan Stenlid5, Tom Bruns10, Karl-Henrik Larsson11, Urmas Kõljalg2,4, Håvard Kauserud7.   

Abstract

Mesh：

Year:  2011        PMID： 21557749     DOI： 10.1111/j.1469-8137.2011.03755.x

Source DB:  PubMed          Journal:  New Phytol        ISSN： 0028-646X            Impact factor:   10.151


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  17 in total

1.  Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact?

Authors:  Robert Lücking; James D Lawrey; Patrick M Gillevet; Masoumeh Sikaroodi; Manuela Dal-Forno; Simon A Berger
Journal:  J Mol Evol       Date:  2013-12-17       Impact factor: 2.395

2.  High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples.

Authors:  Hirokazu Toju; Akifumi S Tanabe; Satoshi Yamamoto; Hirotoshi Sato
Journal:  PLoS One       Date:  2012-07-12       Impact factor: 3.240

3.  Diversity and spatial structure of belowground plant-fungal symbiosis in a mixed subtropical forest of ectomycorrhizal and arbuscular mycorrhizal plants.

Authors:  Hirokazu Toju; Hirotoshi Sato; Akifumi S Tanabe
Journal:  PLoS One       Date:  2014-01-28       Impact factor: 3.240

4.  Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera).

Authors:  Miklós Bálint; Peter Tiffin; Björn Hallström; Robert B O'Hara; Matthew S Olson; Johnathon D Fankhauser; Meike Piepenbring; Imke Schmitt
Journal:  PLoS One       Date:  2013-01-11       Impact factor: 3.240

5.  Community composition of root-associated fungi in a Quercus-dominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi.

Authors:  Hirokazu Toju; Satoshi Yamamoto; Hirotoshi Sato; Akifumi S Tanabe; Gregory S Gilbert; Kohmei Kadowaki
Journal:  Ecol Evol       Date:  2013-04-05       Impact factor: 2.912

6.  How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants.

Authors:  Hirokazu Toju; Hirotoshi Sato; Satoshi Yamamoto; Kohmei Kadowaki; Akifumi S Tanabe; Shigenobu Yazawa; Osamu Nishimura; Kiyokazu Agata
Journal:  Ecol Evol       Date:  2013-08-02       Impact factor: 2.912

7.  The contribution of DNA metabarcoding to fungal conservation: diversity assessment, habitat partitioning and mapping red-listed fungi in protected coastal Salix repens communities in the Netherlands.

Authors:  József Geml; Barbara Gravendeel; Kristiaan J van der Gaag; Manon Neilen; Youri Lammers; Niels Raes; Tatiana A Semenova; Peter de Knijff; Machiel E Noordeloos
Journal:  PLoS One       Date:  2014-06-17       Impact factor: 3.240

8.  An Illumina metabarcoding pipeline for fungi.

Authors:  Miklós Bálint; Philipp-André Schmidt; Rahul Sharma; Marco Thines; Imke Schmitt
Journal:  Ecol Evol       Date:  2014-06-02       Impact factor: 2.912

9.  High richness of ectomycorrhizal fungi and low host specificity in a coastal sand dune ecosystem revealed by network analysis.

Authors:  Alice Roy-Bolduc; Etienne Laliberté; Mohamed Hijri
Journal:  Ecol Evol       Date:  2015-12-29       Impact factor: 2.912

10.  DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient.

Authors:  Caroline E Emilson; Dean G Thompson; Lisa A Venier; Teresita M Porter; Tom Swystun; Derek Chartrand; Scott Capell; Mehrdad Hajibabaei
Journal:  Sci Rep       Date:  2017-10-06       Impact factor: 4.379
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