Literature DB >> 21557595

New theoretical method for rapid prediction of solvation free energy in water.

Shuangliang Zhao1, Zhehui Jin, Jianzhong Wu.   

Abstract

We present a new theoretical method for rapid calculation of the solvation free energy in water by combining molecular simulation and the classical density functional theory (DFT). The DFT calculation is based on an accurate free-energy functional for water that incorporates the simulation results for long-range correlations and the fundamental measure theory for the molecular excluded-volume effects. The numerical performance of the theoretical method has been validated with simulation results and experimental data for the solvation free energies of halide (F(-), Cl(-), Br(-), and I(-)) and alkali (Li(+), Na(+), K(+), Rb(+), and Cs(+)) ions in water at ambient conditions. Because simulation is applied only to the particular thermodynamic condition of interest, the hybrid method is computationally much more efficient than conventional ways of solvation free energy calculations.

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Year:  2011        PMID: 21557595      PMCID: PMC3125112          DOI: 10.1021/jp201949k

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  22 in total

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Journal:  J Am Chem Soc       Date:  1988-08-01       Impact factor: 15.419

2.  Self-Consistent Reaction Field Model for Aqueous and Nonaqueous Solutions Based on Accurate Polarized Partial Charges.

Authors:  Aleksandr V Marenich; Ryan M Olson; Casey P Kelly; Christopher J Cramer; Donald G Truhlar
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3.  Density functional theory of solvation and its relation to implicit solvent models.

Authors:  Rosa Ramirez; Daniel Borgis
Journal:  J Phys Chem B       Date:  2005-04-14       Impact factor: 2.991

4.  Improving the performance of the coupled reference interaction site model-hyper-netted chain (RISM-HNC)/simulation method for free energy of solvation.

Authors:  Holly Freedman; Ly Le; Jack A Tuszynski; Thanh N Truong
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

5.  On the proton exclusion of aquaporins: a statistical mechanics study.

Authors:  Saree Phongphanphanee; Norio Yoshida; Fumio Hirata
Journal:  J Am Chem Soc       Date:  2008-01-11       Impact factor: 15.419

6.  Hydration of ionic species studied by the reference interaction site model with a repulsive bridge correction.

Authors:  Gennady N Chuev; Maxim V Fedorov; Sandro Chiodo; Nino Russo; Emilia Sicilia
Journal:  J Comput Chem       Date:  2008-11-15       Impact factor: 3.376

7.  Liquids and structural glasses special feature: liquids: condensed, disordered, and sometimes complex.

Authors:  David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-08       Impact factor: 11.205

8.  Towards a universal method for calculating hydration free energies: a 3D reference interaction site model with partial molar volume correction.

Authors:  David S Palmer; Andrey I Frolov; Ekaterina L Ratkova; Maxim V Fedorov
Journal:  J Phys Condens Matter       Date:  2010-12-15       Impact factor: 2.333

Review 9.  Fundamental measure theory for hard-sphere mixtures: a review.

Authors:  Roland Roth
Journal:  J Phys Condens Matter       Date:  2010-01-27       Impact factor: 2.333

10.  Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations.

Authors:  In Suk Joung; Thomas E Cheatham
Journal:  J Phys Chem B       Date:  2008-07-02       Impact factor: 2.991

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  1 in total

1.  Molecular determinants of epidermal growth factor binding: a molecular dynamics study.

Authors:  Jeffrey M Sanders; Matthew E Wampole; Mathew L Thakur; Eric Wickstrom
Journal:  PLoS One       Date:  2013-01-24       Impact factor: 3.240

  1 in total

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