Literature DB >> 21557325

Observing the osmophobic effect in action at the single molecule level.

Daniel Aioanei1, Isabella Tessari, Luigi Bubacco, Bruno Samorì, Marco Brucale.   

Abstract

Protecting osmolytes are widespread small organic molecules able to stabilize the folded state of most proteins against various denaturing stresses in vivo. The osmophobic model explains thermodynamically their action through a preferential exclusion of the osmolyte molecules from the protein surface, thus favoring the formation of intrapeptide hydrogen bonds. Few works addressed the influence of protecting osmolytes on the protein unfolding transition state and kinetics. Among those, previous single molecule force spectroscopy experiments evidenced a complexation of the protecting osmolyte molecules at the unfolding transition state of the protein, in apparent contradiction with the osmophobic nature of the protein backbone. We present single-molecule evidence that glycerol, which is a ubiquitous protecting osmolyte, stabilizes a globular protein against mechanical unfolding without binding into its unfolding transition state structure. We show experimentally that glycerol does not change the position of the unfolding transition state as projected onto the mechanical reaction coordinate. Moreover, we compute theoretically the projection of the unfolding transition state onto two other common reaction coordinates, that is, the number of native peptide bonds and the weighted number of native contacts. To that end, we augment an analytic Ising-like protein model with support for group-transfer free energies. Using this model, we find again that the position of the unfolding transition state does not change in the presence of glycerol, giving further support to the conclusions based on the single-molecule experiments.
Copyright © 2011 Wiley-Liss, Inc.

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Year:  2011        PMID: 21557325     DOI: 10.1002/prot.23045

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  4 in total

1.  Worm-like Ising model for protein mechanical unfolding under the effect of osmolytes.

Authors:  Daniel Aioanei; Marco Brucale; Isabella Tessari; Luigi Bubacco; Bruno Samorì
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

2.  Probing Small Molecule Binding to Unfolded Polyprotein Based on its Elasticity and Refolding.

Authors:  Ricksen S Winardhi; Qingnan Tang; Jin Chen; Mingxi Yao; Jie Yan
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

3.  Single-Molecule Chemo-Mechanical Spectroscopy Provides Structural Identity of Folding Intermediates.

Authors:  Hesam N Motlagh; Dmitri Toptygin; Christian M Kaiser; Vincent J Hilser
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

Review 4.  The Wako-Saitô-Muñoz-Eaton Model for Predicting Protein Folding and Dynamics.

Authors:  Koji Ooka; Runjing Liu; Munehito Arai
Journal:  Molecules       Date:  2022-07-12       Impact factor: 4.927

  4 in total

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