Literature DB >> 21553909

Thermodynamic, diffusional, and structural anomalies in rigid-body water models.

Manish Agarwal1, Mohammad Parvez Alam, Charusita Chakravarty.   

Abstract

Structural, density, entropy, and diffusivity anomalies of the TIP4P/2005 model of water are mapped out over a wide range of densities and temperatures. The locus of temperatures of maximum density (TMD) for this model is very close to the experimental TMD locus for temperatures between 250 and 275 K. Four different water models (mTIP3P, TIP4P, TIP5P, and SPC/E) are compared with the TIP4P/2005 model in terms of their anomalous behavior. For all the water models, the density regimes for anomalous behavior are bounded by a low-density limit at around 0.85-0.90 g cm(-3) and a high-density limit at about 1.10-1.15 g cm(-3). The onset temperatures of the density anomaly in the various models show a much greater variation, ranging from 202 K for mTIP3P to 289 K for TIP5P. The order maps for the various water models are qualitatively very similar with the structurally anomalous regions almost superimposable in the q(tet)-τ plane. Comparison of the phase diagrams of water models with the region of liquid-state anomalies shows that the crystalline phases are much more sensitive to the choice of water models than the liquid state anomalies; for example, SPC/E and TIP4P/2005 show qualitatively similar liquid state anomalies but very different phase diagrams. The anomalies in the liquid in all the models occur at much lower pressures than those at which the melting line changes from negative to positive slope. The results in this study demonstrate several aspects of structure-entropy-diffusivity relationships of water models that can be compared with experiment and used to develop better atomistic and coarse-grained models for water.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21553909     DOI: 10.1021/jp110695t

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

1.  Bond orientational order in liquids: Towards a unified description of water-like anomalies, liquid-liquid transition, glass transition, and crystallization: Bond orientational order in liquids.

Authors:  Hajime Tanaka
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-31       Impact factor: 1.890

2.  Extrapolation and interpolation strategies for efficiently estimating structural observables as a function of temperature and density.

Authors:  Jacob I Monroe; Harold W Hatch; Nathan A Mahynski; M Scott Shell; Vincent K Shen
Journal:  J Chem Phys       Date:  2020-10-14       Impact factor: 3.488

3.  Connection between water's dynamical and structural properties: Insights from ab initio simulations.

Authors:  Cecilia Herrero; Michela Pauletti; Gabriele Tocci; Marcella Iannuzzi; Laurent Joly
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-19       Impact factor: 12.779

4.  Molecular Dynamics Simulations of Macromolecular Crystals.

Authors:  David S Cerutti; David A Case
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-11-16

5.  Water: A Tale of Two Liquids.

Authors:  Paola Gallo; Katrin Amann-Winkel; Charles Austen Angell; Mikhail Alexeevich Anisimov; Frédéric Caupin; Charusita Chakravarty; Erik Lascaris; Thomas Loerting; Athanassios Zois Panagiotopoulos; John Russo; Jonas Alexander Sellberg; Harry Eugene Stanley; Hajime Tanaka; Carlos Vega; Limei Xu; Lars Gunnar Moody Pettersson
Journal:  Chem Rev       Date:  2016-07-05       Impact factor: 60.622

6.  Relationship between structural order and water-like anomalies in metastable liquid silicon: Ab initio molecular dynamics.

Authors:  G Zhao; J L Yan; Y J Yu; M C Ding; X G Zhao; H Y Wang
Journal:  Sci Rep       Date:  2017-01-05       Impact factor: 4.379

7.  Machine learning coarse grained models for water.

Authors:  Henry Chan; Mathew J Cherukara; Badri Narayanan; Troy D Loeffler; Chris Benmore; Stephen K Gray; Subramanian K R S Sankaranarayanan
Journal:  Nat Commun       Date:  2019-01-22       Impact factor: 14.919

8.  Quantum-mechanical exploration of the phase diagram of water.

Authors:  Aleks Reinhardt; Bingqing Cheng
Journal:  Nat Commun       Date:  2021-01-26       Impact factor: 14.919

9.  Nanoconfined Fluids: Uniqueness of Water Compared to Other Liquids.

Authors:  Fabio Leoni; Carles Calero; Giancarlo Franzese
Journal:  ACS Nano       Date:  2021-11-22       Impact factor: 15.881

10.  Net charge changes in the calculation of relative ligand-binding free energies via classical atomistic molecular dynamics simulation.

Authors:  Maria M Reif; Chris Oostenbrink
Journal:  J Comput Chem       Date:  2013-11-19       Impact factor: 3.376

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.