Literature DB >> 21553844

Encapsulation of metal cations by the PhePhe ligand: a cation-π ion cage.

Robert C Dunbar1, Jeffrey D Steill, Jos Oomens.   

Abstract

Structures and binding thermochemistry are investigated for protonated PhePhe and for complexes of PhePhe with the alkaline-earth ions Ba(2+) and Ca(2+), the alkali-metal ions Li(+), Na(+), K(+), and Cs(+), and the transition-metal ion Ag(+). The two neighboring aromatic side chains open the possibility of a novel encapsulation motif of the metal ion in a double cation-π configuration, which is found to be realized for the alkaline-earth complexes and, in a variant form, for the Ag(+) complex. Experimentally, complexes are formed by electrospray ionization, trapped in an FT-ICR mass spectrometer, and characterized by infrared multiple photon dissociation (IRMPD) spectroscopy using the free electron laser FELIX. Interpretation is assisted by thermochemical and IR spectral calculations using density functional theory (DFT). The IRMPD spectrum of protonated PhePhe is reproduced with good fidelity by the calculated spectrum of the most stable conformation, although the additional presence of the secondmost stable conformation is not excluded. All metal-ion complexes have charge-solvated binding modes, with zwitterion (salt bridge) forms being much less stable. The amide oxygen always coordinates to the metal ion, as well as at least one phenyl ring (cation-π interaction). At least one additional chelation site is always occupied, which may be either the amino nitrogen or the carboxy carbonyl oxygen. The alkaline-earth complexes prefer a highly compact caged structure with both phenyl rings providing cation-π stabilization in a "sandwich" configuration (OORR chelation). The alkali-metal complexes prefer open-cage structures with only one cation-π interaction, except perhaps Cs(+). The Ag(+) complex shows a unique preference for the closed-cage amino-bound NORR structure. Ligand-driven perturbations of normal-mode frequencies are generally found to correlate linearly with metal-ion binding energy.

Entities:  

Year:  2011        PMID: 21553844     DOI: 10.1021/ja200219q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Consecutive fragmentation mechanisms of protonated ferulic acid probed by infrared multiple photon dissociation spectroscopy and electronic structure calculations.

Authors:  Sabrina M Martens; Rick A Marta; Jonathan K Martens; Terry B McMahon
Journal:  J Am Soc Mass Spectrom       Date:  2012-08-04       Impact factor: 3.109

2.  Investigation of the encapsulation of metal cations (Cu2+, Zn2+, Ca2+ and Ba2+) by the dipeptide Phe-Phe using natural bond orbital theory and molecular dynamics simulation.

Authors:  Snehasis Bhunia; Ajeet Singh; Animesh K Ojha
Journal:  J Mol Model       Date:  2017-02-22       Impact factor: 1.810

3.  A database of alkaline-earth-coordinated peptide cross sections: insight into general aspects of structure.

Authors:  Jonathan M Dilger; Stephen J Valentine; Matthew S Glover; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2013-03-20       Impact factor: 3.109

4.  Infrared multiple photon dissociation spectroscopy of a gas-phase oxo-molybdenum complex with 1,2-dithiolene ligands.

Authors:  Michael J van Stipdonk; Partha Basu; Sara A Dille; John K Gibson; Giel Berden; Jos Oomens
Journal:  J Phys Chem A       Date:  2014-07-10       Impact factor: 2.781

5.  Charge-state Resolved Infrared Multiple Photon Dissociation (IRMPD) Spectroscopy of Ubiquitin Ions in the Gas Phase.

Authors:  Yijie Yang; Guanhua Liao; Xianglei Kong
Journal:  Sci Rep       Date:  2017-11-29       Impact factor: 4.379

6.  Structural Diversity of Di-Metalized Arginine Evidenced by Infrared Multiple Photon Dissociation (IRMPD) Spectroscopy in the Gas Phase.

Authors:  Ruxia Feng; Yicheng Xu; Xianglei Kong
Journal:  Molecules       Date:  2021-10-29       Impact factor: 4.411

7.  Infrared multiple photon dissociation of cesium iodide clusters doped with mono-, di- and triglycine.

Authors:  Jakob Heller; Milan Ončák; Nina K Bersenkowitsch; Christian van der Linde; Martin K Beyer
Journal:  Eur J Mass Spectrom (Chichester)       Date:  2018-10-04       Impact factor: 1.067

Review 8.  Noncovalent Complexes of Cyclodextrin with Small Organic Molecules: Applications and Insights into Host-Guest Interactions in the Gas Phase and Condensed Phase.

Authors:  Jae-Ung Lee; Sung-Sik Lee; Sungyul Lee; Han Bin Oh
Journal:  Molecules       Date:  2020-09-04       Impact factor: 4.411

  8 in total

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