Literature DB >> 21551329

Bryocella elongata gen. nov., sp. nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008.

Svetlana N Dedysh1, Irina S Kulichevskaya1, Yulia M Serkebaeva1, Maria A Mityaeva1, Vladimir V Sorokin1, Natalia E Suzina2, W Irene C Rijpstra3, Jaap S Sinninghe Damsté3.   

Abstract

An aerobic, pink-pigmented, chemo-organotrophic bacterium, designated strain SN10(T), was isolated from a methanotrophic enrichment culture obtained from an acidic Sphagnum peat. This isolate was represented by Gram-negative, non-motile rods that multiply by normal cell division and form rosettes. Strain SN10(T) is an obligately acidophilic, mesophilic bacterium capable of growth at pH 3.2-6.6 (with an optimum at pH 4.7-5.2) and at 6-32 °C (with an optimum at 20-24 °C). The preferred growth substrates are sugars and several heteropolysaccharides of plant and microbial origin, such as pectin, lichenan, fucoidan and gellan gum. While not being capable of growth on C(1) compounds, strain SN10(T) can develop in co-culture with exopolysaccharide-producing methanotrophs by utilization of their capsular material. The major fatty acids determined in strain SN10(T) using the conventional lipid extraction procedure are iso-C(15:0) and C(16:1)ω7c. Upon hydrolysis of total cell material, substantial amounts of the uncommon membrane-spanning lipid 13,16-dimethyl octacosanedioic acid (isodiabolic acid) were also detected. The polar lipids are two phosphohexoses, phosphatidylethanolamine, phosphatidylglycerol and several phospholipids of unknown structure. The major quinone is MK-8. Pigments are carotenoids. The G+C content of the DNA is 60.7 mol%. Strain SN10(T) forms a separate lineage within subdivision 1 of the phylum Acidobacteria and displays 94.0-95.4% 16S rRNA gene sequence similarity to members of the genera Edaphobacter and Granulicella, 93.0-93.7% similarity to members of the genus Terriglobus and 92.2-92.3 % similarity to the type strains of Telmatobacter bradus and Acidobacterium capsulatum. Therefore, strain SN10(T) is classified within a novel genus and species, for which the name Bryocella elongata gen. nov., sp. nov. is proposed. Strain SN10(T) (=LMG 25276(T) =DSM 22489(T)) is the type strain of Bryocella elongata. An emended description of Edaphobacter aggregans Koch et al. 2008 is also given.

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Year:  2011        PMID: 21551329     DOI: 10.1099/ijs.0.031898-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  18 in total

1.  13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Johan W H Weijers; Bärbel U Foesel; Jörg Overmann; Svetlana N Dedysh
Journal:  Appl Environ Microbiol       Date:  2011-04-22       Impact factor: 4.792

2.  Thermotomaculum hydrothermale gen. nov., sp. nov., a novel heterotrophic thermophile within the phylum Acidobacteria from a deep-sea hydrothermal vent chimney in the Southern Okinawa Trough.

Authors:  Hiroshi Izumi; Takuro Nunoura; Masayuki Miyazaki; Sayaka Mino; Tomohiro Toki; Ken Takai; Yoshihiko Sako; Tomoo Sawabe; Satoshi Nakagawa
Journal:  Extremophiles       Date:  2012-01-03       Impact factor: 2.395

3.  Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Bärbel U Foesel; Pia K Wüst; Jörg Overmann; Marcus Tank; Donald A Bryant; Peter F Dunfield; Karen Houghton; Matthew B Stott
Journal:  Appl Environ Microbiol       Date:  2014-06-13       Impact factor: 4.792

4.  Soil Acidobacteria Strain AB23 Resistance to Oxidative Stress Through Production of Carotenoids.

Authors:  Otávio Henrique Bezerra Pinto; Flávio Silva Costa; Gisele Regina Rodrigues; Rosiane Andrade da Costa; Gabriel da Rocha Fernandes; Osmindo Rodrigues Pires Júnior; Cristine Chaves Barreto
Journal:  Microb Ecol       Date:  2020-07-02       Impact factor: 4.552

5.  Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation.

Authors:  Paula García-Fraile; Oldrich Benada; Tomáš Cajthaml; Petr Baldrian; Salvador Lladó
Journal:  Appl Environ Microbiol       Date:  2015-11-06       Impact factor: 4.792

6.  Cultivating uncultured bacteria from northern wetlands: knowledge gained and remaining gaps.

Authors:  Svetlana N Dedysh
Journal:  Front Microbiol       Date:  2011-09-16       Impact factor: 5.640

7.  Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil.

Authors:  Suman R Rawat; Minna K Männistö; Valentin Starovoytov; Lynne Goodwin; Matt Nolan; Loren J Hauser; Miriam Land; Karen Walston Davenport; Tanja Woyke; Max M Häggblom
Journal:  Stand Genomic Sci       Date:  2013-09-30

8.  Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes.

Authors:  Elisa C P Catão; Fabyano A C Lopes; Janaína F Araújo; Alinne P de Castro; Cristine C Barreto; Mercedes M C Bustamante; Betania F Quirino; Ricardo H Krüger
Journal:  Int J Microbiol       Date:  2014-09-15

Review 9.  The Ecology of Acidobacteria: Moving beyond Genes and Genomes.

Authors:  Anna M Kielak; Cristine C Barreto; George A Kowalchuk; Johannes A van Veen; Eiko E Kuramae
Journal:  Front Microbiol       Date:  2016-05-31       Impact factor: 5.640

10.  Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil.

Authors:  Suman R Rawat; Minna K Männistö; Valentin Starovoytov; Lynne Goodwin; Matt Nolan; Loren Hauser; Miriam Land; Karen Walston Davenport; Tanja Woyke; Max M Häggblom
Journal:  Stand Genomic Sci       Date:  2013-12-05
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