Literature DB >> 21550877

A multiscale graph theoretical approach to gene regulation networks: a case study in atrial fibrillation.

Federica Censi1, Alessandro Giuliani, Pietro Bartolini, Giovanni Calcagnini.   

Abstract

The changes in between gene expression correlation structure induced in heart tissue by atrial fibrillation are studied by means of a graph theoretical approach. As expected by general statistical mechanics principles, the disease increases the general connectivity of the gene regulation network; the multiscale character of the analysis allows us to get both a general appreciation of regulation network connectivity and the sketching of a biological interpretation of the studied disease. The presence of a still largely unknown, scale invariant, global correlation field encompassing the entire genome is demonstrated as well.

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Year:  2011        PMID: 21550877     DOI: 10.1109/TBME.2011.2150747

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  16 in total

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Journal:  Front Genet       Date:  2021-06-17       Impact factor: 4.599

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Authors:  Masa Tsuchiya; Alessandro Giuliani; Midori Hashimoto; Jekaterina Erenpreisa; Kenichi Yoshikawa
Journal:  PLoS One       Date:  2015-06-11       Impact factor: 3.240

3.  Analysis on differential gene expression data for prediction of new biological features in permanent atrial fibrillation.

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Journal:  PLoS One       Date:  2013-10-18       Impact factor: 3.240

4.  Integration analysis of microRNA and mRNA expression profiles in human peripheral blood lymphocytes cultured in modeled microgravity.

Authors:  C Girardi; C De Pittà; S Casara; E Calura; C Romualdi; L Celotti; M Mognato
Journal:  Biomed Res Int       Date:  2014-06-23       Impact factor: 3.411

5.  Transcriptional Network Architecture of Breast Cancer Molecular Subtypes.

Authors:  Guillermo de Anda-Jáuregui; Tadeo E Velázquez-Caldelas; Jesús Espinal-Enríquez; Enrique Hernández-Lemus
Journal:  Front Physiol       Date:  2016-11-22       Impact factor: 4.566

6.  Network-Based Predictors of Progression in Head and Neck Squamous Cell Carcinoma.

Authors:  Nasim Sanati; Ovidiu D Iancu; Guanming Wu; James E Jacobs; Shannon K McWeeney
Journal:  Front Genet       Date:  2018-05-29       Impact factor: 4.599

7.  Cell-Fate Determination from Embryo to Cancer Development: Genomic Mechanism Elucidated.

Authors:  Masa Tsuchiya; Alessandro Giuliani; Kenichi Yoshikawa
Journal:  Int J Mol Sci       Date:  2020-06-27       Impact factor: 5.923

8.  Ranking genome-wide correlation measurements improves microarray and RNA-seq based global and targeted co-expression networks.

Authors:  Franziska Liesecke; Dimitri Daudu; Rodolphe Dugé de Bernonville; Sébastien Besseau; Marc Clastre; Vincent Courdavault; Johan-Owen de Craene; Joel Crèche; Nathalie Giglioli-Guivarc'h; Gaëlle Glévarec; Olivier Pichon; Thomas Dugé de Bernonville
Journal:  Sci Rep       Date:  2018-07-18       Impact factor: 4.379

9.  Identification of Biologically Essential Nodes via Determinative Power in Logical Models of Cellular Processes.

Authors:  Trevor Pentzien; Bhanwar L Puniya; Tomáš Helikar; Mihaela T Matache
Journal:  Front Physiol       Date:  2018-08-31       Impact factor: 4.566

10.  Mitochondrial network genes in the skeletal muscle of amyotrophic lateral sclerosis patients.

Authors:  Camilla Bernardini; Federica Censi; Wanda Lattanzi; Marta Barba; Giovanni Calcagnini; Alessandro Giuliani; Giorgio Tasca; Mario Sabatelli; Enzo Ricci; Fabrizio Michetti
Journal:  PLoS One       Date:  2013-02-28       Impact factor: 3.240

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