Literature DB >> 21548678

Cutoff radius effect of the isotropic periodic sum and Wolf method in liquid-vapor interfaces of water.

Kazuaki Z Takahashi1, Tetsu Narumi, Kenji Yasuoka.   

Abstract

As a more economical but similarly accurate computation method than the Ewald sum, the isotropic periodic sum (IPS) method for nonpolar molecules (IPSn) and polar molecules (IPSp), along with the Wolf method are of interest, but the cutoff radius dependence is an important issue. To evaluate the cutoff radius effect of the three methods, a water-vapor interfacial system has been studied by molecular dynamics. The Wolf method can produce adequate results for surface tension compared to that of the Ewald sum (within 2.9%) at a long enough cutoff radius, r(c). However, the estimation of the electrostatic potential profile and dipole orientational function is poor. The Wolf method cannot estimate electrostatic configuration at r(c) ≤ L(z)∕2 (L(z) is the longest lattice of the system). We have found that the convergence of the surface tension and the electrostatic configuration of the IPSn method is faster than that of the IPSp method. Moreover, the IPSn method is most accurate among the three methods for the same cutoff radius. Furthermore, the behavior of the surface tension against the cutoff radius shows a greater difference for the IPSn and IPSp method. The surface tension of the IPSp method fluctuates and presents a similar result to that of the Ewald sum, but the surface tension for the IPSn method greatly deviates near r(c) = L(z)∕3. The cause of this deviation is the difference between the interfacial configuration of the water surface and the cutoff treatment of the IPS method. The deviation becomes insignificant far from r(c) = L(z)∕3. In spite of this shortcoming, the IPSn method gives the most accurate result in estimating the surface tension at r(c) = L(z)∕2. From all the results in this work, the IPSn and IPSp method have been found to be more accurate than the Wolf method. In conclusion, the surface tension and structure of water-vapor interface can be calculated by the IPSn method when r(c) is greater than or equal to the longest lattice of the system. The IPSp method and the Wolf method require a longer cutoff radius than the longest lattice of the system to estimate interfacial properties.

Entities:  

Year:  2011        PMID: 21548678     DOI: 10.1063/1.3578473

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

1.  The homogeneity condition: A simple way to derive isotropic periodic sum potentials for efficient calculation of long-range interactions in molecular simulation.

Authors:  Xiongwu Wu; Bernard R Brooks
Journal:  J Chem Phys       Date:  2019-06-07       Impact factor: 3.488

2.  Treating electrostatics with Wolf summation in combined quantum mechanical and molecular mechanical simulations.

Authors:  Pedro Ojeda-May; Jingzhi Pu
Journal:  J Chem Phys       Date:  2015-11-07       Impact factor: 3.488

3.  Multilevel summation method for electrostatic force evaluation.

Authors:  David J Hardy; Zhe Wu; James C Phillips; John E Stone; Robert D Skeel; Klaus Schulten
Journal:  J Chem Theory Comput       Date:  2015-02-10       Impact factor: 6.006

4.  Computational scheme for pH-dependent binding free energy calculation with explicit solvent.

Authors:  Juyong Lee; Benjamin T Miller; Bernard R Brooks
Journal:  Protein Sci       Date:  2015-08-20       Impact factor: 6.725

5.  Critical test of isotropic periodic sum techniques with group-based cut-off schemes.

Authors:  Takuma Nozawa; Kenji Yasuoka; Kazuaki Z Takahashi
Journal:  Sci Rep       Date:  2018-03-08       Impact factor: 4.379

6.  Crack nucleation criterion and its application to impact indentation in glasses.

Authors:  Jian Luo; K Deenamma Vargheese; Adama Tandia; Guangli Hu; John C Mauro
Journal:  Sci Rep       Date:  2016-04-15       Impact factor: 4.379

7.  A Virtual Mixture Approach to the Study of Multistate Equilibrium: Application to Constant pH Simulation in Explicit Water.

Authors:  Xiongwu Wu; Bernard R Brooks
Journal:  PLoS Comput Biol       Date:  2015-10-27       Impact factor: 4.475

8.  A fast and accurate computational method for the linear-combination-based isotropic periodic sum.

Authors:  Kazuaki Z Takahashi; Takuma Nozawa; Kenji Yasuoka
Journal:  Sci Rep       Date:  2018-08-08       Impact factor: 4.379

  8 in total

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