Literature DB >> 21543876

Cloning, expression, purification, crystallization and preliminary X-ray diffraction data of the Pyrococcus horikoshii RadA intein.

Andrzej Lyskowski1, Jesper S Oeemig, Anniina Jaakkonen, Katariina Rommi, Frank DiMaio, Dongwen Zhou, Tommi Kajander, David Baker, Alexander Wlodawer, Adrian Goldman, Hideo Iwaï.   

Abstract

The RadA intein from the hyperthermophilic archaebacterium Pyrococcus horikoshii was cloned, expressed and purified for subsequent structure determination. The protein crystallized rapidly in several conditions. The best crystals, which diffracted to 1.75 Å resolution, were harvested from drops consisting of 0.1 M HEPES pH 7.5, 3.0 M NaCl and were cryoprotected with Paratone-N before flash-cooling. The collected data were processed in the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 58.1, b = 67.4, c = 82.9 Å. Molecular replacement with Rosetta using energy- and density-guided structure optimization provided the initial solution, which is currently under refinement.

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Year:  2011        PMID: 21543876      PMCID: PMC3087655          DOI: 10.1107/S1744309111008372

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  28 in total

Review 1.  Protein splicing and related forms of protein autoprocessing.

Authors:  H Paulus
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

2.  Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element.

Authors:  S Chong; F B Mersha; D G Comb; M E Scott; D Landry; L M Vence; F B Perler; J Benner; R B Kucera; C A Hirvonen; J J Pelletier; H Paulus; M Q Xu
Journal:  Gene       Date:  1997-06-19       Impact factor: 3.688

Review 3.  Protein splicing in cis and in trans.

Authors:  Lana Saleh; Francine B Perler
Journal:  Chem Rec       Date:  2006       Impact factor: 6.771

4.  Crystal structures of an intein from the split dnaE gene of Synechocystis sp. PCC6803 reveal the catalytic model without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing.

Authors:  Ping Sun; Sheng Ye; Sebastien Ferrandon; Thomas C Evans; Ming-Qun Xu; Zihe Rao
Journal:  J Mol Biol       Date:  2005-09-30       Impact factor: 5.469

5.  High-resolution structure prediction and the crystallographic phase problem.

Authors:  Bin Qian; Srivatsan Raman; Rhiju Das; Philip Bradley; Airlie J McCoy; Randy J Read; David Baker
Journal:  Nature       Date:  2007-10-14       Impact factor: 49.962

Review 6.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

7.  In vivo and in vitro protein ligation by naturally occurring and engineered split DnaE inteins.

Authors:  A Sesilja Aranko; Sara Züger; Edith Buchinger; Hideo Iwaï
Journal:  PLoS One       Date:  2009-04-13       Impact factor: 3.240

8.  MrBUMP: an automated pipeline for molecular replacement.

Authors:  Ronan M Keegan; Martyn D Winn
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

9.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  3 in total

1.  NMR and crystal structures of the Pyrococcus horikoshii RadA intein guide a strategy for engineering a highly efficient and promiscuous intein.

Authors:  Jesper S Oeemig; Dongwen Zhou; Tommi Kajander; Alexander Wlodawer; Hideo Iwaï
Journal:  J Mol Biol       Date:  2012-05-02       Impact factor: 5.469

2.  Improved crystallographic models through iterated local density-guided model deformation and reciprocal-space refinement.

Authors:  Thomas C Terwilliger; Randy J Read; Paul D Adams; Axel T Brunger; Pavel V Afonine; Ralf W Grosse-Kunstleve; Li-Wei Hung
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-06-19

3.  phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta.

Authors:  Thomas C Terwilliger; Frank Dimaio; Randy J Read; David Baker; Gábor Bunkóczi; Paul D Adams; Ralf W Grosse-Kunstleve; Pavel V Afonine; Nathaniel Echols
Journal:  J Struct Funct Genomics       Date:  2012-03-15
  3 in total

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