| Literature DB >> 21541960 |
Yutaka Uejima1, Tomoharu Terashima, Ryo Maezono.
Abstract
We accelerated an ab initio molecular QMC calculation by using GPGPU. Only the bottle-neck part of the calculation is replaced by CUDA subroutine and performed on GPU. The performance on a (single core CPU + GPU) is compared with that on a (single core CPU with double precision), getting 23.6 (11.0) times faster calculations in single (double) precision treatments on GPU. The energy deviation caused by the single precision treatment was found to be within the accuracy required in the calculation, ∼10(-5) hartree. The accelerated computational nodes mounting GPU are combined to form a hybrid MPI cluster on which we confirmed the performance linearly scales to the number of nodes.Entities:
Keywords: CUDA; FMO; GPGPU; MPI; QM/MM; electronic structure; quantum Monte Carlo
Year: 2011 PMID: 21541960 DOI: 10.1002/jcc.21809
Source DB: PubMed Journal: J Comput Chem ISSN: 0192-8651 Impact factor: 3.376