Literature DB >> 21540484

Conserved catalytic residues of the ALDH1L1 aldehyde dehydrogenase domain control binding and discharging of the coenzyme.

Yaroslav Tsybovsky1, Sergey A Krupenko.   

Abstract

The C-terminal domain (C(t)-FDH) of 10-formyltetrahydrofolate dehydrogenase (FDH, ALDH1L1) is an NADP(+)-dependent oxidoreductase and a structural and functional homolog of aldehyde dehydrogenases. Here we report the crystal structures of several C(t)-FDH mutants in which two essential catalytic residues adjacent to the nicotinamide ring of bound NADP(+), Cys-707 and Glu-673, were replaced separately or simultaneously. The replacement of the glutamate with an alanine causes irreversible binding of the coenzyme without any noticeable conformational changes in the vicinity of the nicotinamide ring. Additional replacement of cysteine 707 with an alanine (E673A/C707A double mutant) did not affect this irreversible binding indicating that the lack of the glutamate is solely responsible for the enhanced interaction between the enzyme and the coenzyme. The substitution of the cysteine with an alanine did not affect binding of NADP(+) but resulted in the enzyme lacking the ability to differentiate between the oxidized and reduced coenzyme: unlike the wild-type C(t)-FDH/NADPH complex, in the C707A mutant the position of NADPH is identical to the position of NADP(+) with the nicotinamide ring well ordered within the catalytic center. Thus, whereas the glutamate restricts the affinity for the coenzyme, the cysteine is the sensor of the coenzyme redox state. These conclusions were confirmed by coenzyme binding experiments. Our study further suggests that the binding of the coenzyme is additionally controlled by a long-range communication between the catalytic center and the coenzyme-binding domain and points toward an α-helix involved in the adenine moiety binding as a participant of this communication.

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Year:  2011        PMID: 21540484      PMCID: PMC3123100          DOI: 10.1074/jbc.M111.221069

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

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Journal:  Chem Biol Interact       Date:  2001-01-30       Impact factor: 5.192

2.  Relationships within the aldehyde dehydrogenase extended family.

Authors:  J Perozich; H Nicholas; B C Wang; R Lindahl; J Hempel
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

3.  Order and disorder in mitochondrial aldehyde dehydrogenase.

Authors:  T D Hurley; S Perez-Miller; H Breen
Journal:  Chem Biol Interact       Date:  2001-01-30       Impact factor: 5.192

4.  Differences in the roles of conserved glutamic acid residues in the active site of human class 3 and class 2 aldehyde dehydrogenases.

Authors:  C J Mann; H Weiner
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

5.  Crystal structure of the NADP+-dependent aldehyde dehydrogenase from Vibrio harveyi: structural implications for cofactor specificity and affinity.

Authors:  B Ahvazi; R Coulombe; M Delarge; M Vedadi; L Zhang; E Meighen; A Vrielink
Journal:  Biochem J       Date:  2000-08-01       Impact factor: 3.857

6.  Apo and holo crystal structures of an NADP-dependent aldehyde dehydrogenase from Streptococcus mutans.

Authors:  D Cobessi; F Tête-Favier; S Marchal; S Azza; G Branlant; A Aubry
Journal:  J Mol Biol       Date:  1999-07-02       Impact factor: 5.469

7.  Multiple conformations of NAD and NADH when bound to human cytosolic and mitochondrial aldehyde dehydrogenase.

Authors:  Philip K Hammen; Abdellah Allali-Hassani; Klaas Hallenga; Thomas D Hurley; Henry Weiner
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8.  The structure of retinal dehydrogenase type II at 2.7 A resolution: implications for retinal specificity.

Authors:  A L Lamb; M E Newcomer
Journal:  Biochemistry       Date:  1999-05-11       Impact factor: 3.162

9.  Role of glutamate-268 in the catalytic mechanism of nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase from Streptococcus mutans.

Authors:  S Marchal; S Rahuel-Clermont; G Branlant
Journal:  Biochemistry       Date:  2000-03-28       Impact factor: 3.162

10.  Monovalent cations requirements for the stability of betaine aldehyde dehydrogenase from Pseudomonas aeruginosa, porcine kidney and amaranth leaves.

Authors:  Elisa M Valenzuela-Soto; Roberto Velasco-García; Carlos Mújica-Jiménez; L Laraí Gaviria-González; Rosario A Muñoz-Clares
Journal:  Chem Biol Interact       Date:  2003-02-01       Impact factor: 5.192

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  19 in total

1.  Structure and biochemistry of phenylacetaldehyde dehydrogenase from the Pseudomonas putida S12 styrene catabolic pathway.

Authors:  Anders G Crabo; Baljit Singh; Tim Nguyen; Shahram Emami; George T Gassner; Matthew H Sazinsky
Journal:  Arch Biochem Biophys       Date:  2017-01-31       Impact factor: 4.013

2.  The mechanism of discrimination between oxidized and reduced coenzyme in the aldehyde dehydrogenase domain of Aldh1l1.

Authors:  Yaroslav Tsybovsky; Yuryi Malakhau; Kyle C Strickland; Sergey A Krupenko
Journal:  Chem Biol Interact       Date:  2013-01-05       Impact factor: 5.192

3.  Crystal Structure of Aldehyde Dehydrogenase 16 Reveals Trans-Hierarchical Structural Similarity and a New Dimer.

Authors:  Li-Kai Liu; John J Tanner
Journal:  J Mol Biol       Date:  2018-12-07       Impact factor: 5.469

Review 4.  Loss of ALDH1L1 folate enzyme confers a selective metabolic advantage for tumor progression.

Authors:  Sergey A Krupenko; Natalia I Krupenko
Journal:  Chem Biol Interact       Date:  2019-02-20       Impact factor: 5.192

5.  Adenine binding mode is a key factor in triggering the early release of NADH in coenzyme A-dependent methylmalonate semialdehyde dehydrogenase.

Authors:  Raphaël Bchini; Hélène Dubourg-Gerecke; Sophie Rahuel-Clermont; André Aubry; Guy Branlant; Claude Didierjean; François Talfournier
Journal:  J Biol Chem       Date:  2012-07-10       Impact factor: 5.157

6.  Aldehyde dehydrogenase homologous folate enzymes: Evolutionary switch between cytoplasmic and mitochondrial localization.

Authors:  Natalia I Krupenko; Roger S Holmes; Yaroslav Tsybovsky; Sergey A Krupenko
Journal:  Chem Biol Interact       Date:  2014-12-27       Impact factor: 5.192

7.  Structural basis for a cofactor-dependent oxidation protection and catalysis of cyanobacterial succinic semialdehyde dehydrogenase.

Authors:  Jinseo Park; Sangkee Rhee
Journal:  J Biol Chem       Date:  2013-04-15       Impact factor: 5.157

8.  Molecular characterization of a thermostable aldehyde dehydrogenase (ALDH) from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7.

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Review 9.  Aldehyde dehydrogenases: from eye crystallins to metabolic disease and cancer stem cells.

Authors:  Vasilis Vasiliou; David C Thompson; Clay Smith; Mayumi Fujita; Ying Chen
Journal:  Chem Biol Interact       Date:  2012-11-16       Impact factor: 5.192

10.  NAD+ promotes assembly of the active tetramer of aldehyde dehydrogenase 7A1.

Authors:  David A Korasick; Tommi A White; Srinivas Chakravarthy; John J Tanner
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