Literature DB >> 21539368

The directive of the protein: how does cytochrome P450 select the mechanism of dopamine formation?

Patric Schyman1, Wenzhen Lai, Hui Chen, Yong Wang, Sason Shaik.   

Abstract

Dopamine can be generated from tyramine via arene hydroxylation catalyzed by a cytochrome P450 enzyme (CYP2D6). Our quantum mechanical/molecular mechanical (QM/MM) results reveal the decisive impact of the protein in selecting the 'best' reaction mechanism. Instead of the traditional Meisenheimer-complex mechanism, the study reveals a mechanism involving an initial hydrogen atom transfer from the phenolic hydroxyl group of the tyramine to the iron-oxo of the compound I (Cpd I), followed by a ring-π radical rebound that eventually leads to dopamine by keto-enol rearrangement. This mechanism is not viable in the gas phase since the O-H bond activation by Cpd I is endothermic and the process does not form a stable intermediate. By contrast, the in-protein reaction has a low barrier and is exothermic. It is shown that the local electric field of the protein environment serves as a template that stabilizes the intermediate of the H-abstraction step and thereby mediates the catalysis of dopamine formation at a lower energy cost. Furthermore, it is shown that external electric fields can either catalyze or inhibit the process depending on their directionality.

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Year:  2011        PMID: 21539368     DOI: 10.1021/ja201665x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Dichotomous hydrogen atom transfer vs proton-coupled electron transfer during activation of X-H bonds (X = C, N, O) by nonheme iron-oxo complexes of variable basicity.

Authors:  Dandamudi Usharani; David C Lacy; A S Borovik; Sason Shaik
Journal:  J Am Chem Soc       Date:  2013-11-04       Impact factor: 15.419

2.  The cytochrome P450 2D6*10 genetic polymorphism alters postoperative analgesia.

Authors:  Xiao-Bin Wei; Xi Xiao; Zhou-Xin Han; Dan-Qin Lin; Ping Yu
Journal:  Int J Clin Exp Med       Date:  2015-02-15

3.  Mechanism of the P450-Catalyzed Oxidative Cyclization in the Biosynthesis of Griseofulvin.

Authors:  Jessica M Grandner; Ralph A Cacho; Yi Tang; K N Houk
Journal:  ACS Catal       Date:  2016-05-31       Impact factor: 13.084

4.  Binuclear rhenium carbonyl nitrosyls related to dicobalt octacarbonyl and their decarbonylation products.

Authors:  Bing Xu; Qian-Shu Li; Yaoming Xie; R Bruce King
Journal:  J Mol Model       Date:  2016-06-16       Impact factor: 1.810

5.  Bis(heptalene) "submarine" metal dimer sandwich compounds (C12H10)2M2 (M = Ti, V, Cr, Mn, Fe, Co, Ni).

Authors:  Huidong Li; Hao Feng; Weiguo Sun; Qunchao Fan; Yaoming Xie; R Bruce King; Henry F Schaefer
Journal:  J Mol Model       Date:  2012-08-14       Impact factor: 1.810

6.  Quantum chemical study on the stability of honeybee queen pheromone against atmospheric factors.

Authors:  Rongwei Shi; Fanglin Liu
Journal:  J Mol Model       Date:  2016-05-20       Impact factor: 1.810

7.  How Do Perfluorinated Alkanoic Acids Elicit Cytochrome P450 to Catalyze Methane Hydroxylation? An MD and QM/MM Study.

Authors:  Chunsen Li; Sason Shaik
Journal:  RSC Adv       Date:  2013-03-07       Impact factor: 3.361

Review 8.  Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms.

Authors:  Johannes Kirchmair; Mark J Williamson; Jonathan D Tyzack; Lu Tan; Peter J Bond; Andreas Bender; Robert C Glen
Journal:  J Chem Inf Model       Date:  2012-02-17       Impact factor: 4.956

9.  Conformational turn triggers regio-selectivity in the bioactivation of thiophene-contained compounds mediated by cytochrome P450.

Authors:  Chun-Zhi Ai; Yong Liu; Du-Chu Chen; Yasmeen Saeed; Yi-Zhou Jiang
Journal:  J Biol Inorg Chem       Date:  2019-09-10       Impact factor: 3.358

10.  Identification of Genetic Loci Jointly Influencing Schizophrenia Risk and the Cognitive Traits of Verbal-Numerical Reasoning, Reaction Time, and General Cognitive Function.

Authors:  Olav B Smeland; Oleksandr Frei; Karolina Kauppi; W David Hill; Wen Li; Yunpeng Wang; Florian Krull; Francesco Bettella; Jon A Eriksen; Aree Witoelar; Gail Davies; Chun C Fan; Wesley K Thompson; Max Lam; Todd Lencz; Chi-Hua Chen; Torill Ueland; Erik G Jönsson; Srdjan Djurovic; Ian J Deary; Anders M Dale; Ole A Andreassen
Journal:  JAMA Psychiatry       Date:  2017-10-01       Impact factor: 21.596

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