Literature DB >> 21528460

Immunoprecipitation of piRNPs and directional, next generation sequencing of piRNAs.

Yohei Kirino1, Anastassios Vourekas, Eugene Khandros, Zissimos Mourelatos.   

Abstract

Piwi interacting RNAs (piRNAs) are small (∼25 to ∼30 nucleotide) and are expressed in the germline. piRNAs bind to the Piwi subclade of Argonaute proteins and form the core ribonucleoproteins (RNPs) of piRNPs. We describe a method for the massive identification of piRNAs from immunopurified piRNPs. This strategy may also be used for immunopurification and directional sequencing of RNAs from other RNPs that contain small RNAs.

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Year:  2011        PMID: 21528460     DOI: 10.1007/978-1-61779-046-1_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells.

Authors:  Labib Rouhana; Ana P Vieira; Rachel H Roberts-Galbraith; Phillip A Newmark
Journal:  Development       Date:  2012-02-08       Impact factor: 6.868

Review 2.  Evolution of animal Piwi-interacting RNAs and prokaryotic CRISPRs.

Authors:  M Senthil Kumar; Kevin C Chen
Journal:  Brief Funct Genomics       Date:  2012-04-25       Impact factor: 4.241

3.  Impact of age-associated increase in 2'-O-methylation of miRNAs on aging and neurodegeneration in Drosophila.

Authors:  Masashi Abe; Ammar Naqvi; Gert-Jan Hendriks; Virzhiniya Feltzin; Yongqing Zhu; Andrey Grigoriev; Nancy M Bonini
Journal:  Genes Dev       Date:  2014-01-01       Impact factor: 11.361

4.  Kc167, a widely used Drosophila cell line, contains an active primary piRNA pathway.

Authors:  Nicholas Vrettos; Manolis Maragkakis; Panagiotis Alexiou; Zissimos Mourelatos
Journal:  RNA       Date:  2016-10-27       Impact factor: 4.942

5.  Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm.

Authors:  Anastassios Vourekas; Panagiotis Alexiou; Nicholas Vrettos; Manolis Maragkakis; Zissimos Mourelatos
Journal:  Nature       Date:  2016-03-07       Impact factor: 49.962

  5 in total

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