Literature DB >> 21528451

Detection of human Dicer and Argonaute 2 catalytic activity.

Marjorie P Perron1, Patricia Landry, Isabelle Plante, Patrick Provost.   

Abstract

The microRNA (miRNA)-guided RNA silencing pathway is a central and well-defined cellular process involved in messenger RNA (mRNA) translational control. This complex regulatory process is achieved by a well orchestrated machinery composed of a relatively few protein components, among which the ribonuclease III (RNase III) Dicer and Argonaute 2 (Ago2) play a central role. These two proteins are essential and it is of particular interest to measure and detect their catalytic activity under various situations and/or conditions. In this chapter, we describe different protocols that aim to study and determine the catalytic activity of Dicer and Ago2 in cell extracts, immune complexes, and size-fractionated cell extracts. Another protocol aimed at assessing miRNA binding to Ago2 is also described. These experimental approaches are likely to be useful to researchers investigating the main steps of miRNA biogenesis and function in human health and diseases.

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Year:  2011        PMID: 21528451      PMCID: PMC3557499          DOI: 10.1007/978-1-61779-046-1_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  35 in total

1.  Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain.

Authors:  L Cerutti; N Mian; A Bateman
Journal:  Trends Biochem Sci       Date:  2000-10       Impact factor: 13.807

2.  MicroRNA maturation: stepwise processing and subcellular localization.

Authors:  Yoontae Lee; Kipyoung Jeon; Jun-Tae Lee; Sunyoung Kim; V Narry Kim
Journal:  EMBO J       Date:  2002-09-02       Impact factor: 11.598

3.  Double RNA interference of DNMT3b and DNMT1 enhances DNA demethylation and gene reactivation.

Authors:  Yu-Wei Leu; Farahnaz Rahmatpanah; Huidong Shi; Susan H Wei; Joseph C Liu; Pearlly S Yan; Tim Hui-Ming Huang
Journal:  Cancer Res       Date:  2003-10-01       Impact factor: 12.701

4.  Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP.

Authors:  Haidi Zhang; Fabrice A Kolb; Vincent Brondani; Eric Billy; Witold Filipowicz
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

5.  Ribonuclease activity and RNA binding of recombinant human Dicer.

Authors:  Patrick Provost; David Dishart; Johanne Doucet; David Frendewey; Bengt Samuelsson; Olof Rådmark
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

6.  Developmental roles and molecular characterization of a Drosophila homologue of Arabidopsis Argonaute1, the founder of a novel gene superfamily.

Authors:  Y Kataoka; M Takeichi; T Uemura
Journal:  Genes Cells       Date:  2001-04       Impact factor: 1.891

7.  Existence of a microRNA pathway in anucleate platelets.

Authors:  Patricia Landry; Isabelle Plante; Dominique L Ouellet; Marjorie P Perron; Guy Rousseau; Patrick Provost
Journal:  Nat Struct Mol Biol       Date:  2009-08-09       Impact factor: 15.369

8.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

9.  Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain.

Authors:  Andreas Lingel; Bernd Simon; Elisa Izaurralde; Michael Sattler
Journal:  Nature       Date:  2003-11-16       Impact factor: 49.962

10.  A microRNA in a multiple-turnover RNAi enzyme complex.

Authors:  György Hutvágner; Phillip D Zamore
Journal:  Science       Date:  2002-08-01       Impact factor: 47.728

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  9 in total

1.  Dicer1-mediated miRNA processing shapes the mRNA profile and function of murine platelets.

Authors:  Jesse W Rowley; Stéphane Chappaz; Aurélie Corduan; Mark M W Chong; Robert Campbell; Amanda Khoury; Bhanu Kanth Manne; Jeremy G T Wurtzel; James V Michael; Lawrence E Goldfinger; Michele M Mumaw; Marvin T Nieman; Benjamin T Kile; Patrick Provost; Andrew S Weyrich
Journal:  Blood       Date:  2016-01-14       Impact factor: 22.113

2.  Dicer-dependent biogenesis of small RNAs derived from 7SL RNA.

Authors:  Yong-Feng Ren; Guiling Li; Jianmin Wu; Yong-Feng Xue; Yi-Jiang Song; Lu Lv; Xue-Jiao Zhang; Kai-Fu Tang
Journal:  PLoS One       Date:  2012-07-12       Impact factor: 3.240

Review 3.  Monitoring the spatiotemporal activities of miRNAs in small animal models using molecular imaging modalities.

Authors:  Patrick Baril; Safia Ezzine; Chantal Pichon
Journal:  Int J Mol Sci       Date:  2015-03-04       Impact factor: 5.923

4.  Infected erythrocyte-derived extracellular vesicles alter vascular function via regulatory Ago2-miRNA complexes in malaria.

Authors:  Pierre-Yves Mantel; Daisy Hjelmqvist; Michael Walch; Solange Kharoubi-Hess; Sandra Nilsson; Deepali Ravel; Marina Ribeiro; Christof Grüring; Siyuan Ma; Prasad Padmanabhan; Alexander Trachtenberg; Johan Ankarklev; Nicolas M Brancucci; Curtis Huttenhower; Manoj T Duraisingh; Ionita Ghiran; Winston P Kuo; Luis Filgueira; Roberta Martinelli; Matthias Marti
Journal:  Nat Commun       Date:  2016-10-10       Impact factor: 14.919

5.  Inhibition of Hepatitis C Virus in Mice by a Small Interfering RNA Targeting a Highly Conserved Sequence in Viral IRES Pseudoknot.

Authors:  Jae-Su Moon; Seung-Hoon Lee; Eun-Jung Kim; Hee Cho; Wooseong Lee; Geon-Woo Kim; Hyun-Ji Park; Seung-Woo Cho; Choongho Lee; Jong-Won Oh
Journal:  PLoS One       Date:  2016-01-11       Impact factor: 3.240

6.  TWEAK Negatively Regulates Human Dicer.

Authors:  Marine Lambert; Geneviève Pépin; Oscar Peralta-Zaragoza; Raphaël Matusiak; Sophia Ly; Patricia Landry; Patrick Provost
Journal:  Noncoding RNA       Date:  2016-10-25

7.  Regulation of human Dicer by the resident ER membrane protein CLIMP-63.

Authors:  Geneviève Pépin; Marjorie P Perron; Patrick Provost
Journal:  Nucleic Acids Res       Date:  2012-10-09       Impact factor: 16.971

8.  New insights into the promoterless transcription of DNA coligo templates by RNA polymerase III.

Authors:  Lodoe Lama; Christine I Seidl; Kevin Ryan
Journal:  Transcription       Date:  2014

9.  Effects of pathogen reduction systems on platelet microRNAs, mRNAs, activation, and function.

Authors:  Abdimajid Osman; Walter E Hitzler; Claudius U Meyer; Patricia Landry; Aurélie Corduan; Benoit Laffont; Eric Boilard; Peter Hellstern; Eleftherios C Vamvakas; Patrick Provost
Journal:  Platelets       Date:  2014-04-21       Impact factor: 3.862

  9 in total

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