Literature DB >> 21528450

Purification and assembly of human Argonaute, Dicer, and TRBP complexes.

Nabanita De1, Ian J Macrae.   

Abstract

The RNA-induced silencing complex (RISC) is a programmable gene-silencing machine involved in many aspects of eukaryotic biology. In humans, RISC is programmed or "loaded" with a small-guide RNA by the action of a tri-molecular assembly termed the RISC-loading complex (RLC). The human RLC is composed of the proteins Dicer, TRBP, and Argonaute2 (Ago2). To facilitate structural and biochemical dissection of the RISC-loading process, we have developed a system for the in vitro reconstitution of the human RLC. Here, we describe in detail methods for the expression and purification of recombinant Dicer, TRBP, and Ago2 and protocols for the assembly of RLCs and RLC subcomplexes. We also describe several simple assays to observe the biochemical activities of the assembled protein complexes.

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Year:  2011        PMID: 21528450      PMCID: PMC3532949          DOI: 10.1007/978-1-61779-046-1_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle.

Authors:  R T Batey; M B Sagar; J A Doudna
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

2.  Asymmetry in the assembly of the RNAi enzyme complex.

Authors:  Dianne S Schwarz; György Hutvágner; Tingting Du; Zuoshang Xu; Neil Aronin; Phillip D Zamore
Journal:  Cell       Date:  2003-10-17       Impact factor: 41.582

3.  Functional siRNAs and miRNAs exhibit strand bias.

Authors:  Anastasia Khvorova; Angela Reynolds; Sumedha D Jayasena
Journal:  Cell       Date:  2003-10-17       Impact factor: 41.582

4.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

5.  Human RISC couples microRNA biogenesis and posttranscriptional gene silencing.

Authors:  Richard I Gregory; Thimmaiah P Chendrimada; Neil Cooch; Ramin Shiekhattar
Journal:  Cell       Date:  2005-11-03       Impact factor: 41.582

6.  A protein sensor for siRNA asymmetry.

Authors:  Yukihide Tomari; Christian Matranga; Benjamin Haley; Natalia Martinez; Phillip D Zamore
Journal:  Science       Date:  2004-11-19       Impact factor: 47.728

7.  Purified Argonaute2 and an siRNA form recombinant human RISC.

Authors:  Fabiola V Rivas; Niraj H Tolia; Ji-Joon Song; Juan P Aragon; Jidong Liu; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Nat Struct Mol Biol       Date:  2005-03-30       Impact factor: 15.369

Review 8.  RNAi: the nuts and bolts of the RISC machine.

Authors:  Witold Filipowicz
Journal:  Cell       Date:  2005-07-15       Impact factor: 41.582

9.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

10.  In vitro reconstitution of the human RISC-loading complex.

Authors:  Ian J MacRae; Enbo Ma; Min Zhou; Carol V Robinson; Jennifer A Doudna
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-04       Impact factor: 11.205

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  10 in total

1.  Molecular basis for interaction of let-7 microRNAs with Lin28.

Authors:  Yunsun Nam; Casandra Chen; Richard I Gregory; James J Chou; Piotr Sliz
Journal:  Cell       Date:  2011-11-10       Impact factor: 41.582

2.  The crystal structure of human Argonaute2.

Authors:  Nicole T Schirle; Ian J MacRae
Journal:  Science       Date:  2012-04-26       Impact factor: 47.728

3.  A Macrocyclic Peptide Ligand Binds the Oncogenic MicroRNA-21 Precursor and Suppresses Dicer Processing.

Authors:  Matthew D Shortridge; Matthew J Walker; Tom Pavelitz; Yu Chen; Wen Yang; Gabriele Varani
Journal:  ACS Chem Biol       Date:  2017-05-02       Impact factor: 5.100

4.  Helix-7 in Argonaute2 shapes the microRNA seed region for rapid target recognition.

Authors:  Shannon M Klum; Stanley D Chandradoss; Nicole T Schirle; Chirlmin Joo; Ian J MacRae
Journal:  EMBO J       Date:  2017-09-22       Impact factor: 11.598

5.  Single-pot enzymatic synthesis of Dicer-substrate siRNAs.

Authors:  Keelan Z Guiley; Ashley J Pratt; Ian J MacRae
Journal:  Nucleic Acids Res       Date:  2011-12-20       Impact factor: 16.971

6.  TRBP and eIF6 homologue in Marsupenaeus japonicus play crucial roles in antiviral response.

Authors:  Shuai Wang; An-Jing Chen; Li-Jie Shi; Xiao-Fan Zhao; Jin-Xing Wang
Journal:  PLoS One       Date:  2012-01-18       Impact factor: 3.240

7.  Global Approaches to the Role of miRNAs in Drug-Induced Changes in Gene Expression.

Authors:  Jodi E Eipper-Mains; Betty A Eipper; Richard E Mains
Journal:  Front Genet       Date:  2012-06-13       Impact factor: 4.599

8.  Argonaute Utilization for miRNA Silencing Is Determined by Phosphorylation-Dependent Recruitment of LIM-Domain-Containing Proteins.

Authors:  Katherine S Bridge; Kunal M Shah; Yigen Li; Daniel E Foxler; Sybil C K Wong; Duncan C Miller; Kathryn M Davidson; John G Foster; Ruth Rose; Michael R Hodgkinson; Paulo S Ribeiro; A Aziz Aboobaker; Kenta Yashiro; Xiaozhong Wang; Paul R Graves; Michael J Plevin; Dimitris Lagos; Tyson V Sharp
Journal:  Cell Rep       Date:  2017-07-05       Impact factor: 9.423

Review 9.  Autophagy-Regulating microRNAs and Cancer.

Authors:  Devrim Gozuacik; Yunus Akkoc; Deniz Gulfem Ozturk; Muhammed Kocak
Journal:  Front Oncol       Date:  2017-04-18       Impact factor: 6.244

Review 10.  Biogenesis and mechanism of action of small non-coding RNAs: insights from the point of view of structural biology.

Authors:  Marina C Costa; Ana Lúcia Leitão; Francisco J Enguita
Journal:  Int J Mol Sci       Date:  2012-08-17       Impact factor: 6.208

  10 in total

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