Literature DB >> 21527443

Tales from an academic RNAi screening facility; FAQs.

Ming Jiang1, Rachael Instrell, Becky Saunders, Haakon Berven, Michael Howell.   

Abstract

RNAi technology is now a well-established and widely employed research technique that has been adopted by many researchers for use in large-scale screening campaigns. Here, we offer our experience of genome-wide siRNA screening from the perspective of a facility providing screening as a service to a wide range of researchers with diverse interests and approaches. We have experienced the emotional rollercoaster of screening from the exuberant early promise of a screen, the messy reality of the data through to the recognition of screen data as a potential information goldmine. Here, we use some of the questions we most frequently encounter to highlight the initial concerns of many researchers embarking on a siRNA screen and conclude that an informed view of what can be reasonably expected from a screen is essential to the most effective implementation of the technology. Along the way, we suggest that for this area of research at least, either centralization of the resources or close and open collaboration between interested parties offers distinct advantages.

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Year:  2011        PMID: 21527443     DOI: 10.1093/bfgp/elr016

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  3 in total

1.  G protein-coupled receptor kinase 2 promotes flaviviridae entry and replication.

Authors:  Caroline Le Sommer; Nicholas J Barrows; Shelton S Bradrick; James L Pearson; Mariano A Garcia-Blanco
Journal:  PLoS Negl Trop Dis       Date:  2012-09-13

2.  FlyRNAi.org--the database of the Drosophila RNAi screening center: 2012 update.

Authors:  Ian T Flockhart; Matthew Booker; Yanhui Hu; Benjamin McElvany; Quentin Gilly; Bernard Mathey-Prevot; Norbert Perrimon; Stephanie E Mohr
Journal:  Nucleic Acids Res       Date:  2011-11-08       Impact factor: 16.971

3.  HTS-DB: an online resource to publish and query data from functional genomics high-throughput siRNA screening projects.

Authors:  Rebecca E Saunders; Rachael Instrell; Rossella Rispoli; Ming Jiang; Michael Howell
Journal:  Database (Oxford)       Date:  2013-10-11       Impact factor: 3.451

  3 in total

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