Literature DB >> 21525642

Effective scavenging at cryotemperatures: further increasing the dose tolerance of protein crystals.

Eugenio De la Mora1, Ian Carmichael, Elspeth F Garman.   

Abstract

The rate of radiation damage to macromolecular crystals at both room temperature and 100 K has previously been shown to be reduced by the use of certain radical scavengers. Here the effects of sodium nitrate, an electron scavenger, are investigated at 100 K. For sodium nitrate at a concentration of 0.5 M in chicken egg-white lysozyme crystals, the dose tolerance is increased by a factor of two as judged from the global damage parameters, and no specific structural damage to the disulfide bonds is seen until the dose is greatly in excess (more than a factor of five) of the value at which damage appears in electron density maps derived from a scavenger-free crystal. In the electron density maps, ordered nitrate ions adjacent to the disulfide bonds are seen to lose an O atom, and appear to protect the disulfide bonds. In addition, results reinforcing previous reports on the effectiveness of ascorbate are presented. The mechanisms of action of both scavengers in the crystalline environment are elucidated.

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Year:  2011        PMID: 21525642     DOI: 10.1107/S0909049511007163

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  13 in total

1.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

2.  Global radiation damage: temperature dependence, time dependence and how to outrun it.

Authors:  Matthew Warkentin; Jesse B Hopkins; Ryan Badeau; Anne M Mulichak; Lisa J Keefe; Robert E Thorne
Journal:  J Synchrotron Radiat       Date:  2012-11-29       Impact factor: 2.616

3.  Estimate your dose: RADDOSE-3D.

Authors:  Charles S Bury; Jonathan C Brooks-Bartlett; Steven P Walsh; Elspeth F Garman
Journal:  Protein Sci       Date:  2017-11-06       Impact factor: 6.725

4.  Kinetic modeling of the X-ray-induced damage to a metalloprotein.

Authors:  Katherine M Davis; Irina Kosheleva; Robert W Henning; Gerald T Seidler; Yulia Pushkar
Journal:  J Phys Chem B       Date:  2013-07-25       Impact factor: 2.991

5.  Macromolecular crystallography radiation damage research: what's new?

Authors:  Elspeth F Garman; Martin Weik
Journal:  J Synchrotron Radiat       Date:  2011-04-27       Impact factor: 2.616

6.  Outrunning free radicals in room-temperature macromolecular crystallography.

Authors:  Robin L Owen; Danny Axford; Joanne E Nettleship; Raymond J Owens; James I Robinson; Ann W Morgan; Andrew S Doré; Guillaume Lebon; Christopher G Tate; Elizabeth E Fry; Jingshan Ren; David I Stuart; Gwyndaf Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-06-15

7.  OH cleavage from tyrosine: debunking a myth.

Authors:  Charles S Bury; Ian Carmichael; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

8.  To scavenge or not to scavenge, that is STILL the question.

Authors:  Elizabeth G Allan; Melissa C Kander; Ian Carmichael; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2012-12-05       Impact factor: 2.616

9.  A survey of global radiation damage to 15 different protein crystal types at room temperature: a new decay model.

Authors:  Ricardo Miguel Ferraz Leal; Gleb Bourenkov; Silvia Russi; Alexander N Popov
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

10.  Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability.

Authors:  Timothy D Frouws; Philip D Barth; Timothy J Richmond
Journal:  J Mol Biol       Date:  2017-11-04       Impact factor: 5.469

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