Literature DB >> 21525640

Similarities and differences in radiation damage at 100 K versus 160 K in a crystal of thermolysin.

Douglas H Juers1, Martin Weik.   

Abstract

The temperature-dependence of radiation damage in macromolecular X-ray crystallography is currently much debated. Most protein crystallographic studies are based on data collected at 100 K. Data collection at temperatures below 100 K has been proposed to reduce radiation damage and above 100 K to be useful for kinetic crystallography that is aimed at the generation and trapping of protein intermediate states. Here the global and specific synchrotron-radiation sensitivity of crystalline thermolysin at 100 and 160 K are compared. Both types of damage are higher at 160 K than at 100 K. At 160 K more residue types are affected (Lys, Asp, Gln, Pro, Thr, Met, Asn) than at 100 K (Met, Asp, Glu, Lys). The X-ray-induced relative atomic B-factor increase is shown to correlate with the proximity of the atom to the nearest solvent channel at 160 K. Two models may explain the observed correlation: either an increase in static disorder or an increased attack of hydroxyl radicals from the solvent area of the crystal.

Entities:  

Year:  2011        PMID: 21525640     DOI: 10.1107/S0909049511007631

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  11 in total

1.  Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-08-09

2.  MAP_CHANNELS: a computation tool to aid in the visualization and characterization of solvent channels in macromolecular crystals.

Authors:  Douglas H Juers; Jon Ruffin
Journal:  J Appl Crystallogr       Date:  2014-11-28       Impact factor: 3.304

3.  Temperature-dependent radiation sensitivity and order of 70S ribosome crystals.

Authors:  Matthew Warkentin; Jesse B Hopkins; Jonah B Haber; Gregor Blaha; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-10-23

4.  Large-volume protein crystal growth for neutron macromolecular crystallography.

Authors:  Joseph D Ng; James K Baird; Leighton Coates; Juan M Garcia-Ruiz; Teresa A Hodge; Sijay Huang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-30       Impact factor: 1.056

5.  Spatial distribution of radiation damage to crystalline proteins at 25-300 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse B Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-08-18

6.  Global radiation damage: temperature dependence, time dependence and how to outrun it.

Authors:  Matthew Warkentin; Jesse B Hopkins; Ryan Badeau; Anne M Mulichak; Lisa J Keefe; Robert E Thorne
Journal:  J Synchrotron Radiat       Date:  2012-11-29       Impact factor: 2.616

7.  Macromolecular crystallography radiation damage research: what's new?

Authors:  Elspeth F Garman; Martin Weik
Journal:  J Synchrotron Radiat       Date:  2011-04-27       Impact factor: 2.616

Review 8.  Identifying and quantifying radiation damage at the atomic level.

Authors:  Markus Gerstel; Charlotte M Deane; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2015-02-14       Impact factor: 2.616

9.  Outrunning free radicals in room-temperature macromolecular crystallography.

Authors:  Robin L Owen; Danny Axford; Joanne E Nettleship; Raymond J Owens; James I Robinson; Ann W Morgan; Andrew S Doré; Guillaume Lebon; Christopher G Tate; Elizabeth E Fry; Jingshan Ren; David I Stuart; Gwyndaf Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-06-15

10.  OH cleavage from tyrosine: debunking a myth.

Authors:  Charles S Bury; Ian Carmichael; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

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