Literature DB >> 21523183

Methyl 2-{2-[(E)-(2-hy-droxy-3-meth-oxy-benzyl-idene)amino]-ethyl-amino}-cyclo-pentene-1-carbodithio-ate.

Saeid Menati, Ali Kakanejadi, Abbas Taeb, Giuseppe Bruno, Hadi Amiri Rudbari.   

Abstract

In the title Schiff base compound, C(17)H(22)n class="Chemical">N(2)O(2)S(2), which adopts an E configuration with respect to the imine C=N double bond, the C=N and N-C bond distances are 1.2789 (16) and 1.4546 (16) Å, respectively. In the mol-ecule there are intra-molecular O-H⋯N and N-H⋯S hydrogen bonds, and the CH=N-C substituent is almost coplanar with the benzene ring [C-N-C-C torsion angle = -178.80 (11)°]. The crystal packing is stabilized by inter-molecular C-H⋯O and C-H⋯π inter-actions involving the aromatic ring.

Entities:  

Year:  2011        PMID: 21523183      PMCID: PMC3051642          DOI: 10.1107/S1600536811002972

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For properties and applications of Schiff base compounds, see: Sabater et al. (1999 ▶); Di Bella & Fragala (2002 ▶); Lecren et al. (2007 ▶); Güngör & Gürkan (2010 ▶). For related structures, see: Pereira et al. (2008 ▶); Kumar et al. (1995 ▶); Asadi et al. (2009 ▶).

Experimental

Crystal data

C17H22N2O2S2 M = 350.49 Triclinic, a = 7.7933 (2) Å b = 10.3486 (2) Å c = 11.9532 (3) Å α = 108.038 (1)° β = 93.349 (1)° γ = 100.296 (1)° V = 895.19 (4) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 296 K 0.56 × 0.45 × 0.34 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.678, T max = 0.746 34525 measured reflections 4761 independent reflections 4235 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.109 S = 1.05 4761 reflections 211 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811002972/su2251sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002972/su2251Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H22N2O2S2Z = 2
Mr = 350.49F(000) = 372
Triclinic, P1Dx = 1.300 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7933 (2) ÅCell parameters from 9856 reflections
b = 10.3486 (2) Åθ = 2.7–29.0°
c = 11.9532 (3) ŵ = 0.31 mm1
α = 108.038 (1)°T = 296 K
β = 93.349 (1)°Prismatic, black
γ = 100.296 (1)°0.56 × 0.45 × 0.34 mm
V = 895.19 (4) Å3
Bruker APEXII CCD diffractometer4761 independent reflections
Radiation source: fine-focus sealed tube4235 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 29.1°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.678, Tmax = 0.746k = −14→14
34525 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0602P)2 + 0.160P] where P = (Fo2 + 2Fc2)/3
4761 reflections(Δ/σ)max = 0.002
211 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.34940 (5)0.35488 (3)0.20000 (3)0.05017 (11)
S20.29009 (5)0.64159 (4)0.22423 (3)0.05473 (11)
O1−0.09386 (17)1.17333 (16)0.37397 (12)0.0836 (4)
O20.00507 (12)1.04545 (10)0.17106 (8)0.0511 (2)
H20.04951.00770.11230.077*
N10.21120 (14)0.62955 (11)−0.03025 (9)0.0435 (2)
H10.21840.67270.04450.052*
N20.23401 (13)0.92834 (10)0.05271 (10)0.0433 (2)
C10.3828 (3)0.4423 (2)0.35518 (14)0.0785 (5)
H1A0.47440.52390.37310.118*
H1B0.41620.38170.39530.118*
H1C0.27610.46870.38100.118*
C20.29524 (14)0.47869 (11)0.13773 (10)0.0375 (2)
C30.26114 (14)0.42536 (11)0.01462 (10)0.0365 (2)
C40.22487 (13)0.49886 (11)−0.06190 (9)0.0360 (2)
C50.20752 (18)0.40864 (13)−0.18882 (10)0.0465 (3)
H5A0.31130.4324−0.22520.056*
H5B0.10540.4178−0.23390.056*
C60.1871 (2)0.26237 (15)−0.18208 (13)0.0625 (4)
H6A0.24650.2067−0.24220.075*
H6B0.06390.2176−0.19380.075*
C70.2702 (2)0.27904 (13)−0.05846 (11)0.0503 (3)
H7A0.20500.2117−0.02720.060*
H7B0.39110.2676−0.05960.060*
C80.18503 (17)0.70860 (13)−0.10912 (11)0.0461 (3)
H8A0.06180.7121−0.11970.055*
H8B0.21890.6634−0.18610.055*
C90.29423 (16)0.85464 (13)−0.05752 (12)0.0453 (3)
H9A0.41670.8509−0.04280.054*
H9B0.28500.9041−0.11380.054*
C100.33243 (16)0.95933 (13)0.15062 (12)0.0454 (3)
H100.44210.93560.14930.054*
C110.27848 (17)1.03029 (12)0.26352 (11)0.0461 (3)
C120.11586 (17)1.06993 (12)0.26856 (11)0.0449 (3)
C130.0665 (2)1.13836 (16)0.37903 (14)0.0592 (3)
C140.1797 (3)1.16566 (19)0.48081 (14)0.0744 (5)
H140.14661.21000.55410.089*
C150.3412 (3)1.1281 (2)0.47537 (15)0.0780 (5)
H150.41651.14870.54470.094*
C160.3908 (2)1.06093 (17)0.36880 (15)0.0652 (4)
H160.49931.03530.36580.078*
C17−0.1453 (3)1.2484 (3)0.4833 (2)0.1217 (11)
H17A−0.14751.19490.53630.183*
H17B−0.26031.26590.46960.183*
H17C−0.06301.33510.51800.183*
U11U22U33U12U13U23
S10.0626 (2)0.04592 (18)0.04539 (17)0.01308 (14)0.00025 (14)0.01981 (13)
S20.0818 (3)0.04600 (18)0.03766 (16)0.02337 (16)0.00973 (15)0.00942 (13)
O10.0729 (7)0.0936 (10)0.0702 (8)0.0283 (7)0.0167 (6)−0.0007 (7)
O20.0478 (5)0.0523 (5)0.0496 (5)0.0163 (4)−0.0034 (4)0.0101 (4)
N10.0560 (6)0.0407 (5)0.0373 (5)0.0170 (4)0.0067 (4)0.0138 (4)
N20.0452 (5)0.0389 (5)0.0488 (5)0.0130 (4)0.0043 (4)0.0167 (4)
C10.1227 (16)0.0735 (11)0.0439 (7)0.0214 (10)0.0018 (9)0.0266 (7)
C20.0363 (5)0.0385 (5)0.0389 (5)0.0075 (4)0.0053 (4)0.0142 (4)
C30.0356 (5)0.0345 (5)0.0381 (5)0.0071 (4)0.0032 (4)0.0105 (4)
C40.0321 (4)0.0382 (5)0.0369 (5)0.0070 (4)0.0033 (4)0.0112 (4)
C50.0549 (7)0.0438 (6)0.0359 (5)0.0074 (5)−0.0013 (5)0.0088 (5)
C60.0919 (11)0.0417 (7)0.0447 (7)0.0121 (7)−0.0077 (7)0.0050 (5)
C70.0654 (8)0.0371 (6)0.0449 (6)0.0130 (5)−0.0009 (5)0.0085 (5)
C80.0547 (6)0.0463 (6)0.0427 (6)0.0181 (5)0.0050 (5)0.0183 (5)
C90.0466 (6)0.0467 (6)0.0522 (7)0.0177 (5)0.0123 (5)0.0240 (5)
C100.0434 (6)0.0392 (6)0.0575 (7)0.0114 (4)0.0007 (5)0.0208 (5)
C110.0531 (6)0.0378 (5)0.0486 (6)0.0098 (5)−0.0049 (5)0.0174 (5)
C120.0517 (6)0.0365 (5)0.0459 (6)0.0074 (5)0.0000 (5)0.0146 (5)
C130.0685 (9)0.0524 (7)0.0531 (8)0.0121 (6)0.0091 (6)0.0119 (6)
C140.1066 (14)0.0683 (10)0.0437 (7)0.0165 (10)0.0050 (8)0.0136 (7)
C150.1076 (14)0.0729 (11)0.0508 (8)0.0220 (10)−0.0196 (9)0.0196 (8)
C160.0735 (9)0.0595 (8)0.0619 (9)0.0192 (7)−0.0176 (7)0.0202 (7)
C170.0930 (15)0.127 (2)0.1020 (17)0.0243 (15)0.0333 (13)−0.0292 (16)
S1—C21.7666 (11)C6—H6A0.9700
S1—C11.7740 (16)C6—H6B0.9700
S2—C21.6918 (12)C7—H7A0.9700
O1—C131.365 (2)C7—H7B0.9700
O1—C171.420 (2)C8—C91.5134 (18)
O2—C121.3377 (15)C8—H8A0.9700
O2—H20.8201C8—H8B0.9700
N1—C41.3126 (15)C9—H9A0.9700
N1—C81.4541 (15)C9—H9B0.9700
N1—H10.8595C10—C111.4493 (19)
N2—C101.2789 (16)C10—H100.9300
N2—C91.4546 (16)C11—C121.3991 (18)
C1—H1A0.9600C11—C161.4055 (18)
C1—H1B0.9600C12—C131.4037 (19)
C1—H1C0.9600C13—C141.382 (2)
C2—C31.3926 (15)C14—C151.381 (3)
C3—C41.4046 (15)C14—H140.9300
C3—C71.5124 (16)C15—C161.364 (3)
C4—C51.4984 (15)C15—H150.9300
C5—C61.521 (2)C16—H160.9300
C5—H5A0.9700C17—H17A0.9600
C5—H5B0.9700C17—H17B0.9600
C6—C71.5243 (19)C17—H17C0.9600
C2—S1—C1104.65 (7)N1—C8—C9109.96 (10)
C13—O1—C17116.50 (17)N1—C8—H8A109.7
C12—O2—H2109.5C9—C8—H8A109.7
C4—N1—C8126.44 (10)N1—C8—H8B109.7
C4—N1—H1116.8C9—C8—H8B109.7
C8—N1—H1116.7H8A—C8—H8B108.2
C10—N2—C9119.45 (11)N2—C9—C8110.36 (10)
S1—C1—H1A109.5N2—C9—H9A109.6
S1—C1—H1B109.5C8—C9—H9A109.6
H1A—C1—H1B109.5N2—C9—H9B109.6
S1—C1—H1C109.5C8—C9—H9B109.6
H1A—C1—H1C109.5H9A—C9—H9B108.1
H1B—C1—H1C109.5N2—C10—C11122.07 (11)
C3—C2—S2126.69 (9)N2—C10—H10119.0
C3—C2—S1112.17 (8)C11—C10—H10119.0
S2—C2—S1121.14 (7)C12—C11—C16119.61 (14)
C2—C3—C4126.43 (10)C12—C11—C10120.49 (11)
C2—C3—C7124.42 (10)C16—C11—C10119.90 (13)
C4—C3—C7109.03 (10)O2—C12—C11122.13 (12)
N1—C4—C3126.24 (10)O2—C12—C13118.47 (12)
N1—C4—C5122.93 (10)C11—C12—C13119.40 (12)
C3—C4—C5110.81 (10)O1—C13—C14125.93 (15)
C4—C5—C6103.91 (10)O1—C13—C12114.69 (14)
C4—C5—H5A111.0C14—C13—C12119.38 (15)
C6—C5—H5A111.0C15—C14—C13121.06 (16)
C4—C5—H5B111.0C15—C14—H14119.5
C6—C5—H5B111.0C13—C14—H14119.5
H5A—C5—H5B109.0C16—C15—C14120.29 (15)
C5—C6—C7105.86 (10)C16—C15—H15119.9
C5—C6—H6A110.6C14—C15—H15119.9
C7—C6—H6A110.6C15—C16—C11120.26 (16)
C5—C6—H6B110.6C15—C16—H16119.9
C7—C6—H6B110.6C11—C16—H16119.9
H6A—C6—H6B108.7O1—C17—H17A109.5
C3—C7—C6104.22 (10)O1—C17—H17B109.5
C3—C7—H7A110.9H17A—C17—H17B109.5
C6—C7—H7A110.9O1—C17—H17C109.5
C3—C7—H7B110.9H17A—C17—H17C109.5
C6—C7—H7B110.9H17B—C17—H17C109.5
H7A—C7—H7B108.9
C1—S1—C2—C3−178.88 (11)N1—C8—C9—N2−64.63 (13)
C1—S1—C2—S21.58 (11)C9—N2—C10—C11−178.80 (11)
S2—C2—C3—C43.59 (17)N2—C10—C11—C12−1.23 (19)
S1—C2—C3—C4−175.92 (9)N2—C10—C11—C16179.42 (12)
S2—C2—C3—C7179.08 (10)C16—C11—C12—O2178.90 (13)
S1—C2—C3—C7−0.43 (15)C10—C11—C12—O2−0.45 (18)
C8—N1—C4—C3175.70 (11)C16—C11—C12—C13−0.74 (19)
C8—N1—C4—C5−2.59 (19)C10—C11—C12—C13179.91 (12)
C2—C3—C4—N1−2.38 (19)C17—O1—C13—C142.1 (3)
C7—C3—C4—N1−178.45 (11)C17—O1—C13—C12−177.20 (19)
C2—C3—C4—C5176.08 (11)O2—C12—C13—O1−0.1 (2)
C7—C3—C4—C50.01 (13)C11—C12—C13—O1179.54 (13)
N1—C4—C5—C6−166.44 (12)O2—C12—C13—C14−179.49 (14)
C3—C4—C5—C615.04 (14)C11—C12—C13—C140.2 (2)
C4—C5—C6—C7−23.83 (16)O1—C13—C14—C15−178.55 (18)
C2—C3—C7—C6168.79 (12)C12—C13—C14—C150.7 (3)
C4—C3—C7—C6−15.05 (15)C13—C14—C15—C16−1.1 (3)
C5—C6—C7—C323.93 (16)C14—C15—C16—C110.5 (3)
C4—N1—C8—C9−140.36 (12)C12—C11—C16—C150.4 (2)
C10—N2—C9—C8111.43 (12)C10—C11—C16—C15179.77 (15)
Cg is the centroid of the C11–C16 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···S20.862.323.0275 (11)140
O2—H2···N20.821.852.5806 (14)147
C9—H9B···O2i0.972.513.1166 (16)120
C1—H1C···Cgii0.962.953.617 (2)128
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C11–C16 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S20.862.323.0275 (11)140
O2—H2⋯N20.821.852.5806 (14)147
C9—H9B⋯O2i0.972.513.1166 (16)120
C1—H1CCgii0.962.953.617 (2)128

Symmetry codes: (i) ; (ii) .

  3 in total

1.  One-dimensional supramolecular organization of single-molecule magnets.

Authors:  Lollita Lecren; Wolfgang Wernsdorfer; Yang-Guang Li; Alessandro Vindigni; Hitoshi Miyasaka; Rodolphe Clérac
Journal:  J Am Chem Soc       Date:  2007-03-29       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and spectroscopic properties of novel asymmetric Schiff bases.

Authors:  Ozlem Güngör; Perihan Gürkan
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2010-05-24       Impact factor: 4.098

  3 in total

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