Literature DB >> 21523177

4-Oxo-1,4-dihydro-benzo[h][1,3]thia-zeto[3,2-a]quinoline-1,3-dicarb-oxy-lic acid.

Louise N Dawe, Abeer Ahmed, Mohsen Daneshtalab.   

Abstract

In the title mol-ecule, C(16)H(9)NO(5)S, there is an intra-molecular O-H⋯O hydrogen bond involving the quinolone carbonyl O atom and a carboxyl OH group. In the crystal, inter-molecular O-H⋯O hydrogen bonds between the carbonyl group of the quinolone carboxyl group, and a second carboxyl group on the thia-zeto moiety lead to the formation of chains propagating along [201] and perpendicular to the π-stacks of mol-ecules.

Entities:  

Year:  2011        PMID: 21523177      PMCID: PMC3051750          DOI: 10.1107/S1600536811003333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological importance of thia­zetoquinoline anti­biotics, see: Ozaki et al. (1991 ▶). For similar work using different procedures, see: Ito et al. (1992 ▶, 1994 ▶); Matsuoka et al. (1999 ▶).

Experimental

Crystal data

C16H9NO5S M = 327.31 Monoclinic, a = 7.237 (2) Å b = 16.171 (5) Å c = 11.929 (4) Å β = 106.081 (8)° V = 1341.5 (7) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 153 K 0.18 × 0.04 × 0.04 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: numerical (ABSCOR; Higashi, 1999 ▶) T min = 0.974, T max = 0.996 17300 measured reflections 2769 independent reflections 2614 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.088 wR(F 2) = 0.164 S = 1.30 2769 reflections 214 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811003333/su2249sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003333/su2249Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H9NO5SF(000) = 672
Mr = 327.31Dx = 1.621 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ybcCell parameters from 4915 reflections
a = 7.237 (2) Åθ = 2.2–30.6°
b = 16.171 (5) ŵ = 0.27 mm1
c = 11.929 (4) ÅT = 153 K
β = 106.081 (8)°Needle, colourless
V = 1341.5 (7) Å30.18 × 0.04 × 0.04 mm
Z = 4
Rigaku Saturn diffractometer2769 independent reflections
Radiation source: fine-focus sealed tube2614 reflections with I > 2σ(I)
graphite - Rigaku SHINERint = 0.074
Detector resolution: 14.63 pixels mm-1θmax = 26.5°, θmin = 2.5°
ω scansh = −9→9
Absorption correction: numerical (ABSCOR; Higashi, 1999)k = −20→20
Tmin = 0.974, Tmax = 0.996l = −14→14
17300 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.088Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H atoms treated by a mixture of independent and constrained refinement
S = 1.30w = 1/[σ2(Fo2) + (0.0366P)2 + 2.1946P] where P = (Fo2 + 2Fc2)/3
2769 reflections(Δ/σ)max < 0.001
214 parametersΔρmax = 0.31 e Å3
2 restraintsΔρmin = −0.31 e Å3
Experimental. Spectroscopic data:1H-NMR: (500 MHz, DMSO-d6): δ= 8.27(1H, d, J=8.8), 8.25(1H, d, J=8.4), 8.17(1H, d, J=7.5), 8.02(1H, d, J=8.80), 7.83(1H, dd, J=11.0, 4.0), 7.81–7.76(1H, m), 7.73(1H, s)}. 13C-NMR: (500 MHz, DMSO-d6): δ= 175.76, 165.64, 165.25, 164.26, 136.09, 135.26, 129.58, 128.97, 127.58, 126.05, 122.67, 122.33, 121.53, 121.15, 103.64, 70.43.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.60834 (14)0.26465 (6)0.14885 (8)0.0347 (3)
O10.5029 (4)−0.01520 (17)0.3384 (2)0.0387 (7)
O20.2537 (4)0.33079 (19)−0.0999 (3)0.0512 (8)
O30.1270 (4)0.25356 (17)0.0178 (2)0.0370 (6)
O40.7870 (4)0.20609 (17)0.3966 (2)0.0379 (7)
O50.7226 (4)0.08587 (19)0.4695 (2)0.0439 (7)
N10.4277 (4)0.14703 (17)0.0711 (2)0.0257 (6)
C10.5397 (5)0.1656 (2)0.1790 (3)0.0274 (7)
C20.5731 (5)0.1139 (2)0.2722 (3)0.0289 (8)
C30.4829 (5)0.0354 (2)0.2544 (3)0.0303 (8)
C40.3696 (5)0.0139 (2)0.1369 (3)0.0277 (8)
C50.2892 (5)−0.0668 (2)0.1153 (3)0.0318 (8)
H50.3105−0.10570.17740.038*
C60.1828 (5)−0.0887 (2)0.0074 (3)0.0317 (8)
H60.1297−0.1428−0.00480.038*
C70.1484 (5)−0.0329 (2)−0.0882 (3)0.0281 (8)
C80.0343 (5)−0.0566 (2)−0.2002 (3)0.0327 (8)
H8−0.0180−0.1108−0.21180.039*
C9−0.0019 (5)−0.0027 (3)−0.2920 (3)0.0364 (9)
H9−0.0819−0.0190−0.36610.044*
C100.0790 (6)0.0762 (2)−0.2765 (3)0.0359 (9)
H100.05520.1130−0.34100.043*
C110.1927 (5)0.1015 (2)−0.1696 (3)0.0324 (8)
H110.24750.1553−0.16110.039*
C120.2288 (5)0.0480 (2)−0.0719 (3)0.0275 (8)
C130.3401 (5)0.0702 (2)0.0439 (3)0.0254 (7)
C140.4427 (5)0.2249 (2)0.0104 (3)0.0298 (8)
H140.50900.2174−0.05210.036*
C150.2618 (5)0.2759 (2)−0.0304 (3)0.0327 (8)
C160.7025 (5)0.1379 (2)0.3852 (3)0.0332 (9)
H5A0.649 (6)0.039 (2)0.432 (4)0.052*
H30.008 (4)0.277 (2)−0.029 (3)0.044*
U11U22U33U12U13U23
S10.0343 (5)0.0303 (5)0.0351 (5)−0.0046 (4)0.0023 (4)−0.0016 (4)
O10.0403 (16)0.0408 (16)0.0313 (14)0.0000 (12)0.0036 (12)0.0104 (12)
O20.0460 (17)0.0450 (17)0.062 (2)0.0053 (14)0.0138 (15)0.0244 (16)
O30.0304 (14)0.0391 (15)0.0396 (15)0.0034 (12)0.0065 (12)0.0059 (12)
O40.0335 (14)0.0420 (16)0.0337 (14)−0.0013 (13)0.0022 (11)−0.0073 (12)
O50.0438 (17)0.0558 (19)0.0260 (14)−0.0055 (14)−0.0006 (12)0.0038 (13)
N10.0257 (15)0.0240 (15)0.0263 (15)−0.0017 (12)0.0053 (12)0.0024 (12)
C10.0220 (17)0.0300 (18)0.0289 (18)−0.0005 (14)0.0051 (14)−0.0049 (15)
C20.0265 (18)0.033 (2)0.0273 (18)−0.0005 (15)0.0080 (14)−0.0024 (15)
C30.0285 (18)0.036 (2)0.0268 (18)0.0060 (16)0.0076 (14)0.0044 (15)
C40.0243 (17)0.0300 (19)0.0294 (18)0.0035 (15)0.0087 (14)0.0009 (15)
C50.0285 (19)0.0283 (19)0.040 (2)0.0039 (15)0.0111 (16)0.0066 (16)
C60.0278 (18)0.0252 (19)0.042 (2)0.0007 (15)0.0092 (16)0.0008 (16)
C70.0237 (17)0.0275 (18)0.0326 (19)0.0035 (14)0.0072 (14)−0.0029 (15)
C80.0259 (18)0.033 (2)0.039 (2)−0.0002 (15)0.0076 (16)−0.0087 (17)
C90.0282 (19)0.045 (2)0.031 (2)0.0022 (17)0.0004 (15)−0.0106 (17)
C100.039 (2)0.038 (2)0.0280 (19)0.0004 (18)0.0058 (16)0.0025 (17)
C110.034 (2)0.0300 (19)0.0323 (19)−0.0032 (16)0.0082 (16)−0.0041 (16)
C120.0220 (17)0.0298 (19)0.0303 (18)0.0010 (14)0.0065 (14)−0.0007 (15)
C130.0224 (16)0.0250 (17)0.0302 (18)0.0013 (14)0.0094 (14)0.0003 (15)
C140.0265 (18)0.0290 (19)0.0329 (19)0.0002 (15)0.0065 (15)0.0027 (15)
C150.035 (2)0.0271 (19)0.0325 (19)−0.0016 (16)0.0029 (16)−0.0013 (16)
C160.0300 (19)0.044 (2)0.0267 (19)0.0051 (17)0.0093 (15)−0.0021 (17)
S1—C11.744 (4)C5—C61.351 (5)
S1—C141.866 (4)C5—H50.9500
O1—C31.271 (4)C6—C71.421 (5)
O2—C151.205 (4)C6—H60.9500
O3—C151.314 (5)C7—C81.416 (5)
O3—H30.963 (19)C7—C121.423 (5)
O4—C161.250 (5)C8—C91.366 (5)
O5—C161.288 (5)C8—H80.9500
O5—H5A0.965 (19)C9—C101.394 (6)
N1—C11.350 (4)C9—H90.9500
N1—C131.392 (4)C10—C111.375 (5)
N1—C141.472 (4)C10—H100.9500
C1—C21.358 (5)C11—C121.416 (5)
C2—C31.416 (5)C11—H110.9500
C2—C161.464 (5)C12—C131.438 (5)
C3—C41.456 (5)C14—C151.509 (5)
C4—C131.406 (5)C14—H141.0000
C4—C51.423 (5)
C1—S1—C1473.49 (16)C7—C8—H8119.5
C15—O3—H3107 (3)C8—C9—C10119.8 (3)
C16—O5—H5A103 (3)C8—C9—H9120.1
C1—N1—C13122.3 (3)C10—C9—H9120.1
C1—N1—C1499.9 (3)C11—C10—C9121.1 (4)
C13—N1—C14137.7 (3)C11—C10—H10119.5
N1—C1—C2124.6 (3)C9—C10—H10119.5
N1—C1—S197.9 (2)C10—C11—C12120.5 (3)
C2—C1—S1137.5 (3)C10—C11—H11119.7
C1—C2—C3117.2 (3)C12—C11—H11119.7
C1—C2—C16121.0 (3)C11—C12—C7118.3 (3)
C3—C2—C16121.8 (3)C11—C12—C13124.3 (3)
O1—C3—C2120.8 (3)C7—C12—C13117.3 (3)
O1—C3—C4121.0 (3)N1—C13—C4115.7 (3)
C2—C3—C4118.2 (3)N1—C13—C12123.0 (3)
C13—C4—C5119.1 (3)C4—C13—C12121.3 (3)
C13—C4—C3121.8 (3)N1—C14—C15116.8 (3)
C5—C4—C3119.1 (3)N1—C14—S188.6 (2)
C6—C5—C4120.6 (3)C15—C14—S1112.6 (3)
C6—C5—H5119.7N1—C14—H14112.3
C4—C5—H5119.7C15—C14—H14112.3
C5—C6—C7121.7 (3)S1—C14—H14112.3
C5—C6—H6119.2O2—C15—O3127.1 (4)
C7—C6—H6119.2O2—C15—C14119.8 (4)
C8—C7—C6120.8 (3)O3—C15—C14113.1 (3)
C8—C7—C12119.2 (3)O4—C16—O5123.0 (3)
C6—C7—C12120.0 (3)O4—C16—C2120.2 (3)
C9—C8—C7121.0 (4)O5—C16—C2116.8 (4)
C9—C8—H8119.5
D—H···AD—HH···AD···AD—H···A
O5—H5A···O10.96 (4)1.57 (4)2.504 (4)161 (4)
O3—H3···O4i0.97 (3)1.62 (3)2.569 (4)166 (3)
π···πDistanceAngle of Elevation
Cg1···Cg2i3.560 (2)19.56
Cg3···Cg2i3.644 (2)22.75
Cg3···Cg3i3.688 (2)24.39
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O10.96 (4)1.57 (4)2.504 (4)161 (4)
O3—H3⋯O4i0.97 (3)1.62 (3)2.569 (4)166 (3)

Symmetry code: (i) .

Table 2

π⋯π inter­actions (Å, °)

Angle of elevation defined as the angle of the Cg(I)→Cg(J) vector and the normal to plane J. Cg1, Cg2 and Cg3 are the centroids of the C7–C12, N1/C1–C4/C13 and C4–C7/C12/C13 rings, respectively.

π⋯πDistanceAngle of Elevation
Cg1⋯Cg2i3.560 (2)19.56
Cg3⋯Cg2i3.644 (2)22.75
Cg3⋯Cg3i3.688 (2)24.39

Symmetry code: (i) −x + 1, −y, −z.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  In vivo evaluation of NM441, a new thiazeto-quinoline derivative.

Authors:  M Ozaki; M Matsuda; Y Tomii; K Kimura; J Segawa; M Kitano; M Kise; K Shibata; M Otsuki; T Nishino
Journal:  Antimicrob Agents Chemother       Date:  1991-12       Impact factor: 5.191

3.  Synthesis and antibacterial activity of novel 7-substituted-6-fluoro-1- fluoromethyl-4-oxo-4H-[1,3thiazeto[3,2-a]quinoline-3-carboxylic acid derivatives.

Authors:  M Matsuoka; J Segawa; I Amimoto; Y Masui; Y Tomii; M Kitano; M Kise
Journal:  Chem Pharm Bull (Tokyo)       Date:  1999-12       Impact factor: 1.645

  3 in total

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