Literature DB >> 21523168

4-Bromo-2-{[(pyridin-3-ylmeth-yl)imino]-meth-yl}phenol.

Kwang Ha1.   

Abstract

The title compound, C(13)H(11)BrN(2)O, is a polydentate Schiff base and reveals intra-molecular O-H⋯N hydrogen bonding between the hy-droxy O atom and the imino N atom. The dihedral angle between the aromatic ring and the pyridyl ring is 71.7 (1)°. In the crystal, the mol-ecules are stacked in columns along the c axis and several inter-molecular π-π inter-actions are present between the six-membered rings, with a shortest centroid-centroid distance of 3.707 (2) Å.

Entities:  

Year:  2011        PMID: 21523168      PMCID: PMC3051591          DOI: 10.1107/S1600536811003011

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of 4-bromo-2-{[(pyridin-2-ylmethyl)imino]methyl}phenol, see: Zhang et al. (2003 ▶).

Experimental

Crystal data

C13H11BrN2O M = 291.15 Monoclinic, a = 14.0947 (19) Å b = 6.0994 (8) Å c = 14.0373 (19) Å β = 103.704 (3)° V = 1172.4 (3) Å3 Z = 4 Mo Kα radiation μ = 3.49 mm−1 T = 200 K 0.30 × 0.22 × 0.14 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.833, T max = 1.000 8297 measured reflections 2906 independent reflections 1859 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.099 S = 1.13 2906 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.53 e Å−3 Δρmin = −0.84 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003011/ng5109sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003011/ng5109Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11BrN2OF(000) = 584
Mr = 291.15Dx = 1.649 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3009 reflections
a = 14.0947 (19) Åθ = 3.0–27.0°
b = 6.0994 (8) ŵ = 3.49 mm1
c = 14.0373 (19) ÅT = 200 K
β = 103.704 (3)°Block, yellow
V = 1172.4 (3) Å30.30 × 0.22 × 0.14 mm
Z = 4
Bruker SMART 1000 CCD diffractometer2906 independent reflections
Radiation source: fine-focus sealed tube1859 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 28.3°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −18→17
Tmin = 0.833, Tmax = 1.000k = −8→8
8297 measured reflectionsl = −13→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0134P)2 + 2.5694P] where P = (Fo2 + 2Fc2)/3
2906 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = −0.84 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.76468 (3)0.70338 (8)0.44621 (4)0.04693 (16)
O10.3873 (2)0.1972 (5)0.3696 (2)0.0395 (7)
H10.332 (4)0.283 (9)0.338 (4)0.081 (18)*
N10.3004 (2)0.5487 (6)0.2840 (2)0.0353 (8)
N20.0887 (2)0.9342 (6)0.4172 (3)0.0416 (9)
C10.4726 (3)0.5284 (6)0.3484 (3)0.0267 (8)
C20.4714 (3)0.3123 (6)0.3834 (3)0.0281 (8)
C30.5585 (3)0.2149 (7)0.4341 (3)0.0338 (9)
H30.55780.06870.45740.041*
C40.6450 (3)0.3279 (7)0.4507 (3)0.0338 (9)
H40.70380.26060.48550.041*
C50.6462 (3)0.5405 (7)0.4164 (3)0.0307 (9)
C60.5623 (3)0.6397 (7)0.3654 (3)0.0307 (9)
H60.56490.78450.34130.037*
C70.3835 (3)0.6408 (7)0.2984 (3)0.0307 (9)
H70.38760.78670.27610.037*
C80.2146 (3)0.6772 (8)0.2349 (3)0.0412 (10)
H8A0.18050.60190.17400.049*
H8B0.23580.82310.21690.049*
C90.1454 (2)0.7050 (7)0.3019 (3)0.0317 (8)
C100.1465 (3)0.8949 (7)0.3555 (3)0.0391 (10)
H100.19151.00610.34830.047*
C110.0261 (3)0.7758 (7)0.4251 (3)0.0378 (10)
H11−0.01640.79950.46750.045*
C120.0194 (3)0.5796 (7)0.3754 (3)0.0385 (10)
H12−0.02610.47090.38420.046*
C130.0800 (3)0.5436 (7)0.3127 (3)0.0373 (10)
H130.07660.40980.27740.045*
U11U22U33U12U13U23
Br10.0307 (2)0.0546 (3)0.0530 (3)−0.0087 (2)0.00510 (18)0.0004 (2)
O10.0347 (15)0.0333 (16)0.0524 (19)−0.0090 (13)0.0140 (14)0.0004 (15)
N10.0286 (16)0.043 (2)0.0354 (19)0.0039 (15)0.0092 (15)−0.0030 (16)
N20.0347 (18)0.046 (2)0.047 (2)−0.0025 (16)0.0159 (17)−0.0081 (18)
C10.0302 (19)0.027 (2)0.0246 (19)−0.0023 (15)0.0093 (16)−0.0021 (15)
C20.0327 (19)0.030 (2)0.0245 (19)−0.0043 (17)0.0121 (16)−0.0047 (17)
C30.041 (2)0.033 (2)0.032 (2)0.0032 (18)0.0174 (18)0.0026 (18)
C40.035 (2)0.040 (3)0.028 (2)0.0048 (18)0.0087 (17)0.0010 (18)
C50.0261 (18)0.038 (2)0.030 (2)−0.0020 (16)0.0106 (16)−0.0028 (17)
C60.035 (2)0.031 (2)0.028 (2)−0.0013 (16)0.0114 (17)0.0003 (16)
C70.035 (2)0.033 (2)0.026 (2)0.0058 (17)0.0119 (17)−0.0034 (16)
C80.031 (2)0.057 (3)0.035 (2)0.010 (2)0.0053 (18)0.002 (2)
C90.0216 (17)0.040 (2)0.031 (2)0.0056 (17)0.0015 (15)−0.0001 (19)
C100.029 (2)0.042 (3)0.046 (3)−0.0068 (18)0.0092 (19)−0.004 (2)
C110.0271 (19)0.050 (3)0.038 (2)−0.0008 (19)0.0098 (17)−0.001 (2)
C120.034 (2)0.042 (3)0.041 (2)−0.0079 (19)0.0106 (19)0.006 (2)
C130.039 (2)0.036 (2)0.033 (2)−0.0008 (19)0.0008 (18)−0.0017 (18)
Br1—C51.903 (4)C5—C61.369 (5)
O1—C21.352 (4)C6—H60.9500
O1—H10.96 (5)C7—H70.9500
N1—C71.271 (5)C8—C91.517 (5)
N1—C81.468 (5)C8—H8A0.9900
N2—C111.331 (5)C8—H8B0.9900
N2—C101.344 (5)C9—C101.379 (6)
C1—C61.406 (5)C9—C131.381 (5)
C1—C21.408 (5)C10—H100.9500
C1—C71.456 (5)C11—C121.377 (6)
C2—C31.397 (5)C11—H110.9500
C3—C41.372 (5)C12—C131.382 (6)
C3—H30.9500C12—H120.9500
C4—C51.384 (5)C13—H130.9500
C4—H40.9500
C2—O1—H1112 (3)C1—C7—H7119.2
C7—N1—C8117.6 (4)N1—C8—C9110.4 (3)
C11—N2—C10116.1 (4)N1—C8—H8A109.6
C6—C1—C2118.5 (3)C9—C8—H8A109.6
C6—C1—C7119.5 (3)N1—C8—H8B109.6
C2—C1—C7121.9 (3)C9—C8—H8B109.6
O1—C2—C3119.1 (4)H8A—C8—H8B108.1
O1—C2—C1121.2 (3)C10—C9—C13117.4 (4)
C3—C2—C1119.6 (3)C10—C9—C8120.4 (4)
C4—C3—C2120.7 (4)C13—C9—C8122.2 (4)
C4—C3—H3119.6N2—C10—C9124.8 (4)
C2—C3—H3119.6N2—C10—H10117.6
C3—C4—C5119.7 (4)C9—C10—H10117.6
C3—C4—H4120.2N2—C11—C12123.8 (4)
C5—C4—H4120.2N2—C11—H11118.1
C6—C5—C4121.0 (4)C12—C11—H11118.1
C6—C5—Br1119.2 (3)C11—C12—C13118.8 (4)
C4—C5—Br1119.7 (3)C11—C12—H12120.6
C5—C6—C1120.4 (4)C13—C12—H12120.6
C5—C6—H6119.8C9—C13—C12119.1 (4)
C1—C6—H6119.8C9—C13—H13120.5
N1—C7—C1121.7 (4)C12—C13—H13120.5
N1—C7—H7119.2
C6—C1—C2—O1179.8 (3)C6—C1—C7—N1−178.0 (4)
C7—C1—C2—O11.8 (5)C2—C1—C7—N10.0 (5)
C6—C1—C2—C30.4 (5)C7—N1—C8—C9−118.3 (4)
C7—C1—C2—C3−177.6 (3)N1—C8—C9—C1098.1 (5)
O1—C2—C3—C4−179.0 (3)N1—C8—C9—C13−81.3 (5)
C1—C2—C3—C40.4 (5)C11—N2—C10—C9−0.4 (6)
C2—C3—C4—C5−0.3 (6)C13—C9—C10—N2−0.1 (6)
C3—C4—C5—C6−0.6 (6)C8—C9—C10—N2−179.5 (4)
C3—C4—C5—Br1176.2 (3)C10—N2—C11—C120.8 (6)
C4—C5—C6—C11.3 (6)N2—C11—C12—C13−0.7 (6)
Br1—C5—C6—C1−175.5 (3)C10—C9—C13—C120.2 (6)
C2—C1—C6—C5−1.2 (5)C8—C9—C13—C12179.6 (4)
C7—C1—C6—C5176.8 (3)C11—C12—C13—C90.2 (6)
C8—N1—C7—C1178.6 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.96 (5)1.80 (5)2.616 (5)141 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.96 (5)1.80 (5)2.616 (5)141 (5)
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2.  Structure validation in chemical crystallography.

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