Literature DB >> 21523164

[1-(Carb-oxy-meth-yl)cyclo-hex-yl]methanaminium nitrate.

Elise J C de Vries1, Caryn Gamble, Ahmed Shaikjee.   

Abstract

The title compound, C(9)H(18)NO(2) (+)·NO(3) (-), is an anhydrous nitrate salt of gabapentin, which is formed serendipitously in the presence of selected non-coordinating metals. The crystal structure involves extensive hydrogen bonding between the -NH(3) (+) and -COOH groups and the nitrate anion.

Entities:  

Year:  2011        PMID: 21523164      PMCID: PMC3051645          DOI: 10.1107/S1600536811001267

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ibers (2001 ▶); Ananda et al. (2003 ▶); Reece & Levendis (2008 ▶); Braga et al. (2008 ▶); Fabbiani et al. (2010 ▶). For the role of γ-amino­butyric acid (GABA) as an inhibitory neurotransmitter, see: Bowery (1993 ▶). Gabapentin is used as a neuroleptic drug in the treatment of epilepsy (Taylor, 1993 ▶) but its applications have been extended to the treatment of neuropathic pain (Magnus, 1999 ▶).

Experimental

Crystal data

C9H18NO2NO3 M = 234.25 Orthorhombic, a = 8.1743 (8) Å b = 11.5945 (11) Å c = 12.0396 (9) Å V = 1141.08 (18) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 173 K 0.65 × 0.15 × 0.14 mm

Data collection

Bruker APEXII CCD diffractometer 5654 measured reflections 1448 independent reflections 1278 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.084 S = 1.06 1448 reflections 146 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-NT (Bruker, 2005 ▶); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008) ▶; program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) ▶; molecular graphics: X-SEED (Barbour, 2001 ▶; Atwood & Barbour, 2003 ▶); software used to prepare material for publication: X-SEED. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001267/pb2049sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001267/pb2049Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H18NO2+·NO3F(000) = 504
Mr = 234.25Dx = 1.364 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1858 reflections
a = 8.1743 (8) Åθ = 3.0–25.8°
b = 11.5945 (11) ŵ = 0.11 mm1
c = 12.0396 (9) ÅT = 173 K
V = 1141.08 (18) Å3Plate, colourless
Z = 40.65 × 0.15 × 0.14 mm
Bruker APEXII CCD diffractometer1278 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
graphiteθmax = 27.0°, θmin = 2.4°
φ and ω scansh = −10→8
5654 measured reflectionsk = −12→14
1448 independent reflectionsl = −13→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0451P)2 + 0.0272P] where P = (Fo2 + 2Fc2)/3
1448 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5335 (2)0.08869 (17)0.35572 (15)0.0209 (4)
C20.3870 (2)0.03596 (17)0.41650 (16)0.0221 (4)
H2A0.42500.00310.48790.026*
H2B0.30760.09790.43370.026*
C30.3003 (3)−0.0580 (2)0.35067 (17)0.0301 (5)
H3B0.2046−0.08600.39320.036*
H3A0.3756−0.12380.33930.036*
C40.2437 (3)−0.0124 (2)0.23826 (18)0.0369 (6)
H4B0.15970.04800.24970.044*
H4A0.1931−0.07590.19530.044*
C50.3869 (3)0.0380 (2)0.17244 (17)0.0354 (6)
H5A0.4643−0.02460.15300.042*
H5B0.34560.07210.10250.042*
C60.4764 (3)0.13032 (18)0.23945 (16)0.0272 (5)
H6B0.40310.19750.24900.033*
H6A0.57320.15640.19680.033*
C70.5943 (3)0.19806 (17)0.41759 (16)0.0255 (5)
H7A0.69850.22300.38330.031*
H7B0.51360.26050.40550.031*
C80.6213 (3)0.18538 (18)0.54059 (17)0.0243 (5)
C90.6729 (3)0.0019 (2)0.33743 (16)0.0273 (5)
H9A0.6386−0.05380.27970.033*
H9B0.76940.04400.30860.033*
N10.7225 (2)−0.06315 (16)0.43807 (14)0.0290 (4)
H1A0.8126−0.10630.42260.043*
H1B0.6393−0.11030.45960.043*
H1C0.7460−0.01280.49380.043*
O10.7213 (2)0.12161 (14)0.58267 (12)0.0343 (4)
O20.5264 (2)0.25326 (14)0.59950 (11)0.0325 (4)
H2C0.54560.24340.66740.039*
N20.4911 (2)0.27445 (15)0.87814 (13)0.0245 (4)
O30.3960 (2)0.34667 (14)0.84059 (13)0.0397 (4)
O40.5086 (2)0.26085 (14)0.97989 (11)0.0351 (4)
O50.5740 (2)0.21168 (14)0.81312 (11)0.0333 (4)
U11U22U33U12U13U23
C10.0231 (11)0.0206 (10)0.0191 (9)−0.0003 (8)0.0014 (8)0.0006 (7)
C20.0206 (10)0.0232 (10)0.0224 (9)0.0005 (9)0.0021 (8)0.0002 (8)
C30.0306 (12)0.0289 (12)0.0307 (11)−0.0083 (10)−0.0026 (10)0.0029 (9)
C40.0397 (14)0.0353 (13)0.0358 (13)−0.0083 (12)−0.0138 (10)−0.0028 (10)
C50.0492 (15)0.0355 (13)0.0215 (10)−0.0054 (12)−0.0070 (10)0.0010 (9)
C60.0330 (13)0.0274 (11)0.0212 (10)−0.0035 (10)−0.0009 (9)0.0051 (8)
C70.0265 (11)0.0211 (10)0.0288 (11)−0.0043 (9)−0.0007 (9)0.0025 (8)
C80.0220 (11)0.0213 (10)0.0297 (11)−0.0052 (9)−0.0004 (9)−0.0016 (8)
C90.0294 (11)0.0283 (12)0.0241 (10)0.0030 (10)0.0062 (9)0.0031 (9)
N10.0279 (10)0.0273 (10)0.0318 (10)0.0078 (8)0.0056 (8)0.0008 (8)
O10.0364 (10)0.0356 (9)0.0307 (8)0.0084 (8)−0.0063 (7)−0.0017 (7)
O20.0340 (9)0.0381 (9)0.0254 (7)0.0089 (8)−0.0028 (6)−0.0040 (6)
N20.0241 (10)0.0224 (9)0.0268 (9)−0.0001 (8)−0.0017 (7)0.0001 (7)
O30.0399 (10)0.0424 (10)0.0369 (9)0.0201 (9)−0.0004 (8)0.0076 (7)
O40.0458 (10)0.0381 (9)0.0214 (7)0.0065 (8)−0.0056 (7)−0.0010 (7)
O50.0353 (9)0.0357 (9)0.0288 (8)0.0143 (8)−0.0002 (7)−0.0053 (7)
C1—C21.531 (3)C6—H6A0.9900
C1—C91.536 (3)C7—C81.504 (3)
C1—C71.552 (3)C7—H7A0.9900
C1—C61.552 (3)C7—H7B0.9900
C2—C31.522 (3)C8—O11.214 (3)
C2—H2A0.9900C8—O21.313 (3)
C2—H2B0.9900C9—N11.484 (3)
C3—C41.525 (3)C9—H9A0.9900
C3—H3B0.9900C9—H9B0.9900
C3—H3A0.9900N1—H1A0.9100
C4—C51.530 (3)N1—H1B0.9100
C4—H4B0.9900N1—H1C0.9100
C4—H4A0.9900O2—H2C0.8400
C5—C61.528 (3)N2—O31.229 (2)
C5—H5A0.9900N2—O41.243 (2)
C5—H5B0.9900N2—O51.266 (2)
C6—H6B0.9900
C2—C1—C9112.79 (16)C5—C6—H6B108.8
C2—C1—C7110.32 (16)C1—C6—H6B108.8
C9—C1—C7111.50 (17)C5—C6—H6A108.8
C2—C1—C6108.67 (17)C1—C6—H6A108.8
C9—C1—C6107.29 (16)H6B—C6—H6A107.7
C7—C1—C6105.95 (16)C8—C7—C1116.07 (16)
C3—C2—C1113.65 (16)C8—C7—H7A108.3
C3—C2—H2A108.8C1—C7—H7A108.3
C1—C2—H2A108.8C8—C7—H7B108.3
C3—C2—H2B108.8C1—C7—H7B108.3
C1—C2—H2B108.8H7A—C7—H7B107.4
H2A—C2—H2B107.7O1—C8—O2122.55 (19)
C2—C3—C4110.82 (19)O1—C8—C7124.7 (2)
C2—C3—H3B109.5O2—C8—C7112.73 (19)
C4—C3—H3B109.5N1—C9—C1114.76 (16)
C2—C3—H3A109.5N1—C9—H9A108.6
C4—C3—H3A109.5C1—C9—H9A108.6
H3B—C3—H3A108.1N1—C9—H9B108.6
C3—C4—C5111.1 (2)C1—C9—H9B108.6
C3—C4—H4B109.4H9A—C9—H9B107.6
C5—C4—H4B109.4C9—N1—H1A109.5
C3—C4—H4A109.4C9—N1—H1B109.5
C5—C4—H4A109.4H1A—N1—H1B109.5
H4B—C4—H4A108.0C9—N1—H1C109.5
C6—C5—C4111.14 (18)H1A—N1—H1C109.5
C6—C5—H5A109.4H1B—N1—H1C109.5
C4—C5—H5A109.4C8—O2—H2C109.5
C6—C5—H5B109.4O3—N2—O4121.46 (18)
C4—C5—H5B109.4O3—N2—O5120.20 (16)
H5A—C5—H5B108.0O4—N2—O5118.34 (18)
C5—C6—C1113.72 (17)
C9—C1—C2—C3−65.3 (2)C7—C1—C6—C5−170.79 (19)
C7—C1—C2—C3169.32 (17)C2—C1—C7—C849.5 (2)
C6—C1—C2—C353.6 (2)C9—C1—C7—C8−76.7 (2)
C1—C2—C3—C4−56.9 (3)C6—C1—C7—C8166.91 (19)
C2—C3—C4—C556.0 (3)C1—C7—C8—O163.3 (3)
C3—C4—C5—C6−54.9 (3)C1—C7—C8—O2−118.1 (2)
C4—C5—C6—C154.1 (3)C2—C1—C9—N1−49.7 (2)
C2—C1—C6—C5−52.2 (2)C7—C1—C9—N175.1 (2)
C9—C1—C6—C570.0 (2)C6—C1—C9—N1−169.31 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O5i0.912.022.828 (2)147
N1—H1A···O4i0.912.413.215 (2)147
N1—H1A···N2i0.912.583.465 (3)164
N1—H1B···O4ii0.912.062.951 (3)168
N1—H1B···O3ii0.912.473.022 (2)119
N1—H1B···N2ii0.912.603.390 (3)146
N1—H1C···O10.911.902.760 (2)157
O2—H2C···O50.841.812.646 (2)175
O2—H2C···N20.842.603.376 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O5i0.912.022.828 (2)147
N1—H1A⋯O4i0.912.413.215 (2)147
N1—H1A⋯N2i0.912.583.465 (3)164
N1—H1B⋯O4ii0.912.062.951 (3)168
N1—H1B⋯O3ii0.912.473.022 (2)119
N1—H1B⋯N2ii0.912.603.390 (3)146
N1—H1C⋯O10.911.902.760 (2)157
O2—H2C⋯O50.841.812.646 (2)175
O2—H2C⋯N20.842.603.376 (2)154

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Gabapentin and gabapentin monohydrate.

Authors:  J A Ibers
Journal:  Acta Crystallogr C       Date:  2001-05-15       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Nonepileptic uses of gabapentin.

Authors:  L Magnus
Journal:  Epilepsia       Date:  1999       Impact factor: 5.864

Review 4.  GABAB receptor pharmacology.

Authors:  N G Bowery
Journal:  Annu Rev Pharmacol Toxicol       Date:  1993       Impact factor: 13.820

5.  Polymorphs of gabapentin.

Authors:  Hayley A Reece; Demetrius C Levendis
Journal:  Acta Crystallogr C       Date:  2008-02-09       Impact factor: 1.172

  5 in total
  1 in total

1.  Tetraaqua-tetrakis-{μ(2)-[1-(carb-oxylato-meth-yl)cyclo-hex-yl]methanaminium}bis(μ(3)-hydroxido)bis(nitrato-κO,O')tetrazinc(II).

Authors:  Elise J C de Vries; Caryn Gamble; Ahmed Shaikjee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13
  1 in total

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