Literature DB >> 21523161

1-(4-Chloro-phen-yl)-3-{5-[(E)-2-phenyl-ethen-yl]-1,3,4-thia-diazol-2-yl}urea.

Xiu-Huan Zhan1, Zi-Yun Wang.   

Abstract

In the title compound, C(17)n class="Chemical">H(13)ClN(4)OS, the 1,3,4-thia-diazole ring makes dihedral angles of 9.70 (15) and 7.22 (10)° with the benzene and phenyl rings, respectively; the dihedral angle between these two rings is 6.37 (19)°. In the crystal, pairs of N-H⋯N and C-H⋯O hydrogen bonds between inversion-related mol-ecules result in supra-molecular ribbons displaying alternate R(2) (2)(8) and R(2) (2)(14) graph-set ring motifs.

Entities:  

Year:  2011        PMID: 21523161      PMCID: PMC3051607          DOI: 10.1107/S1600536811002479

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of urea derivatives, see: n class="Gene">Abad et al. (2004 ▶); Chen et al. (2005 ▶); Yonova & Stoilkova (2005 ▶). For the biological activity of 1,3,4-thia­diazole derivatives, see: Guzeldemirci & Kucukbasmaci (2010 ▶); Song & Tan (2008 ▶); Zou et al. (2002 ▶). For the synthesis, see: Song et al. (2007 ▶).

Experimental

Crystal data

C17H13ClN4OS M = 356.82 Monoclinic, a = 11.2399 (6) Å b = 4.1032 (2) Å c = 35.2497 (16) Å β = 91.525 (4)° V = 1625.12 (14) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 298 K 0.40 × 0.06 × 0.02 mm

Data collection

Bruker SMART CCD area-detector diffractometer 10860 measured reflections 3708 independent reflections 2081 reflections with I > 2σ(I) R int = 0.091

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.154 S = 1.01 3708 reflections 223 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811002479/is2664sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002479/is2664Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13ClN4OSF(000) = 736
Mr = 356.82Dx = 1.458 Mg m3Dm = 1.459 Mg m3Dm measured by not measured
Monoclinic, P21/cMelting point > 573 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 11.2399 (6) ÅCell parameters from 1521 reflections
b = 4.1032 (2) Åθ = 2.9–23.2°
c = 35.2497 (16) ŵ = 0.38 mm1
β = 91.525 (4)°T = 298 K
V = 1625.12 (14) Å3Block, colorless
Z = 40.40 × 0.06 × 0.02 mm
Bruker SMART CCD area-detector diffractometer2081 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.091
graphiteθmax = 27.5°, θmin = 1.8°
φ and ω scansh = −14→14
10860 measured reflectionsk = −5→5
3708 independent reflectionsl = −45→35
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0498P)2] where P = (Fo2 + 2Fc2)/3
3708 reflections(Δ/σ)max = 0.001
223 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9546 (3)−0.0487 (8)−0.10673 (10)0.0517 (9)
C20.9869 (3)0.0032 (9)−0.06905 (10)0.0559 (10)
H21.0585−0.0780−0.05920.067*
C30.9118 (3)0.1766 (8)−0.04629 (10)0.0519 (9)
H30.93300.2130−0.02100.062*
C40.8049 (3)0.2972 (8)−0.06083 (10)0.0440 (8)
C50.7739 (3)0.2341 (9)−0.09865 (10)0.0536 (9)
H50.70120.3078−0.10850.064*
C60.8486 (3)0.0657 (9)−0.12150 (10)0.0565 (10)
H60.82770.0291−0.14680.068*
C70.7271 (3)0.5485 (8)−0.00213 (10)0.0468 (8)
C80.6130 (3)0.8377 (8)0.04418 (10)0.0458 (8)
C90.5972 (3)0.9536 (8)0.10951 (9)0.0470 (8)
C100.6089 (3)0.9901 (8)0.15047 (10)0.0499 (9)
H100.55131.11210.16260.060*
C110.6956 (3)0.8619 (8)0.17178 (10)0.0491 (9)
H110.75010.73420.15910.059*
C120.7170 (3)0.8949 (8)0.21285 (10)0.0505 (9)
C130.6371 (4)1.0434 (9)0.23675 (11)0.0639 (10)
H130.56601.12670.22680.077*
C140.6625 (5)1.0679 (11)0.27489 (12)0.0839 (13)
H140.60791.16540.29070.101*
C150.7677 (5)0.9501 (11)0.28999 (12)0.0881 (15)
H150.78430.96830.31590.106*
C160.8480 (4)0.8058 (11)0.26689 (13)0.0810 (13)
H160.91970.72730.27700.097*
C170.8222 (4)0.7772 (9)0.22848 (11)0.0656 (11)
H170.87680.67670.21290.079*
Cl11.05145 (9)−0.2566 (3)−0.13606 (3)0.0742 (4)
N10.7246 (2)0.4851 (7)−0.04021 (8)0.0500 (8)
H1A0.670 (3)0.583 (8)−0.0530 (9)0.060*
N20.6343 (3)0.7450 (8)0.00788 (9)0.0540 (8)
H2A0.588 (3)0.822 (8)−0.0081 (10)0.065*
N30.5194 (2)1.0175 (7)0.05141 (8)0.0548 (8)
N40.5103 (2)1.0847 (7)0.08984 (8)0.0539 (8)
O10.7993 (2)0.4425 (6)0.02092 (6)0.0620 (7)
S10.69949 (7)0.7370 (2)0.08328 (2)0.0497 (3)
U11U22U33U12U13U23
C10.045 (2)0.051 (2)0.060 (2)−0.0060 (17)−0.0008 (18)0.0119 (18)
C20.0382 (19)0.064 (2)0.065 (3)0.0002 (18)−0.0084 (18)0.019 (2)
C30.042 (2)0.065 (2)0.047 (2)−0.0022 (17)−0.0103 (16)0.0139 (18)
C40.0360 (17)0.046 (2)0.050 (2)−0.0055 (15)−0.0075 (15)0.0151 (17)
C50.043 (2)0.064 (2)0.052 (2)−0.0041 (18)−0.0138 (17)0.012 (2)
C60.057 (2)0.065 (2)0.047 (2)−0.0064 (19)−0.0108 (19)0.0081 (19)
C70.0388 (19)0.051 (2)0.050 (2)−0.0031 (16)−0.0126 (16)0.0128 (18)
C80.0393 (19)0.050 (2)0.048 (2)−0.0026 (15)−0.0126 (15)0.0128 (17)
C90.0367 (18)0.052 (2)0.052 (2)−0.0047 (15)−0.0042 (16)0.0126 (17)
C100.0432 (19)0.054 (2)0.053 (2)−0.0010 (17)0.0034 (17)0.0024 (18)
C110.048 (2)0.049 (2)0.051 (2)−0.0004 (16)−0.0034 (17)0.0044 (17)
C120.057 (2)0.050 (2)0.044 (2)−0.0060 (17)−0.0064 (18)0.0063 (17)
C130.071 (3)0.068 (3)0.053 (3)0.007 (2)−0.001 (2)0.001 (2)
C140.120 (4)0.074 (3)0.059 (3)0.007 (3)0.012 (3)−0.009 (2)
C150.142 (5)0.071 (3)0.051 (3)−0.006 (3)−0.023 (3)−0.001 (2)
C160.099 (4)0.076 (3)0.066 (3)0.003 (3)−0.025 (3)0.003 (3)
C170.070 (3)0.072 (3)0.054 (2)0.007 (2)−0.011 (2)0.004 (2)
Cl10.0655 (7)0.0789 (7)0.0785 (8)0.0047 (5)0.0083 (5)0.0018 (6)
N10.0393 (16)0.060 (2)0.0493 (19)0.0041 (14)−0.0180 (14)0.0090 (15)
N20.0420 (17)0.070 (2)0.049 (2)0.0067 (15)−0.0162 (13)0.0101 (17)
N30.0385 (16)0.071 (2)0.0543 (19)0.0026 (15)−0.0145 (14)0.0089 (16)
N40.0385 (16)0.066 (2)0.057 (2)−0.0004 (14)−0.0077 (14)0.0098 (16)
O10.0511 (15)0.0825 (18)0.0513 (15)0.0170 (13)−0.0186 (12)0.0107 (14)
S10.0397 (5)0.0609 (6)0.0479 (5)0.0024 (4)−0.0117 (4)0.0111 (5)
C1—C61.370 (4)C9—S11.739 (3)
C1—C21.384 (5)C10—C111.324 (4)
C1—Cl11.744 (4)C10—H100.9300
C2—C31.378 (5)C11—C121.468 (4)
C2—H20.9300C11—H110.9300
C3—C41.385 (4)C12—C171.379 (5)
C3—H30.9300C12—C131.388 (5)
C4—C51.393 (5)C13—C141.370 (5)
C4—N11.404 (4)C13—H130.9300
C5—C61.366 (5)C14—C151.372 (6)
C5—H50.9300C14—H140.9300
C6—H60.9300C15—C161.366 (6)
C7—O11.214 (4)C15—H150.9300
C7—N11.367 (4)C16—C171.382 (5)
C7—N21.372 (4)C16—H160.9300
C8—N31.316 (4)C17—H170.9300
C8—N21.362 (4)N1—H1A0.86 (3)
C8—S11.716 (3)N2—H2A0.82 (4)
C9—N41.299 (4)N3—N41.389 (4)
C9—C101.454 (4)
C6—C1—C2121.0 (3)C10—C11—C12128.5 (3)
C6—C1—Cl1119.5 (3)C10—C11—H11115.8
C2—C1—Cl1119.5 (3)C12—C11—H11115.8
C3—C2—C1119.3 (3)C17—C12—C13118.2 (3)
C3—C2—H2120.4C17—C12—C11118.6 (3)
C1—C2—H2120.4C13—C12—C11123.2 (3)
C2—C3—C4120.5 (3)C14—C13—C12120.4 (4)
C2—C3—H3119.7C14—C13—H13119.8
C4—C3—H3119.7C12—C13—H13119.8
C3—C4—C5118.7 (3)C13—C14—C15120.6 (4)
C3—C4—N1124.6 (3)C13—C14—H14119.7
C5—C4—N1116.8 (3)C15—C14—H14119.7
C6—C5—C4121.1 (3)C16—C15—C14119.8 (4)
C6—C5—H5119.4C16—C15—H15120.1
C4—C5—H5119.4C14—C15—H15120.1
C5—C6—C1119.4 (3)C15—C16—C17119.7 (4)
C5—C6—H6120.3C15—C16—H16120.1
C1—C6—H6120.3C17—C16—H16120.1
O1—C7—N1125.8 (3)C12—C17—C16121.1 (4)
O1—C7—N2122.6 (3)C12—C17—H17119.4
N1—C7—N2111.6 (3)C16—C17—H17119.4
N3—C8—N2120.0 (3)C7—N1—C4128.1 (3)
N3—C8—S1114.7 (3)C7—N1—H1A115 (2)
N2—C8—S1125.3 (3)C4—N1—H1A117 (2)
N4—C9—C10122.3 (3)C8—N2—C7124.0 (3)
N4—C9—S1115.2 (3)C8—N2—H2A114 (2)
C10—C9—S1122.5 (2)C7—N2—H2A122 (2)
C11—C10—C9124.6 (3)C8—N3—N4112.3 (3)
C11—C10—H10117.7C9—N4—N3111.4 (3)
C9—C10—H10117.7C8—S1—C986.31 (17)
C6—C1—C2—C3−0.9 (5)C13—C12—C17—C16−0.1 (6)
Cl1—C1—C2—C3177.9 (2)C11—C12—C17—C16179.0 (3)
C1—C2—C3—C40.2 (5)C15—C16—C17—C120.7 (6)
C2—C3—C4—C51.2 (5)O1—C7—N1—C4−2.2 (6)
C2—C3—C4—N1−177.8 (3)N2—C7—N1—C4179.4 (3)
C3—C4—C5—C6−2.0 (5)C3—C4—N1—C7−9.2 (5)
N1—C4—C5—C6177.1 (3)C5—C4—N1—C7171.7 (3)
C4—C5—C6—C11.4 (5)N3—C8—N2—C7−177.6 (3)
C2—C1—C6—C50.1 (5)S1—C8—N2—C72.0 (5)
Cl1—C1—C6—C5−178.7 (3)O1—C7—N2—C8−0.7 (5)
N4—C9—C10—C11−179.9 (3)N1—C7—N2—C8177.8 (3)
S1—C9—C10—C11−0.9 (5)N2—C8—N3—N4179.0 (3)
C9—C10—C11—C12177.6 (3)S1—C8—N3—N4−0.6 (4)
C10—C11—C12—C17−171.1 (3)C10—C9—N4—N3179.5 (3)
C10—C11—C12—C137.9 (6)S1—C9—N4—N30.4 (4)
C17—C12—C13—C14−0.7 (6)C8—N3—N4—C90.1 (4)
C11—C12—C13—C14−179.7 (4)N3—C8—S1—C90.7 (3)
C12—C13—C14—C150.8 (7)N2—C8—S1—C9−178.9 (3)
C13—C14—C15—C16−0.2 (7)N4—C9—S1—C8−0.6 (3)
C14—C15—C16—C17−0.5 (7)C10—C9—S1—C8−179.7 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1i0.932.553.432 (4)159
N2—H2A···N3ii0.82 (4)2.03 (4)2.848 (4)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O1i0.932.553.432 (4)159
N2—H2A⋯N3ii0.82 (4)2.03 (4)2.848 (4)174 (3)

Symmetry codes: (i) ; (ii) .

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