Literature DB >> 21523090

Benzyl N-{2-[5-(4-chloro-phen-yl)-1,2,4-oxadiazol-3-yl]propan-2-yl}carbamate.

Hoong-Kun Fun, V Sumangala, G K Nagaraja, Boja Poojary, Suchada Chantrapromma.   

Abstract

In the title 1,2,4-oxadiazole derivative, C(19)H(18)ClN(3)O(3), the 1,2,4-oxadiazole ring makes dihedral angles of 12.83 (8) and 4.89 (8)°, respectively, with the benzyl and 4-chloro-phenyl rings, while the dihedral angle between the benzyl and 4-chloro-phenyl rings is 11.53 (7)°. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds into helical chains along the b axis. A weak C-H⋯π inter-action is also present.

Entities:  

Year:  2011        PMID: 21523090      PMCID: PMC3051527          DOI: 10.1107/S1600536811001504

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background to and applications of 1,2,4-oxadiazole derivatives, see: Chen et al. (1994 ▶); Chimirri et al. (1996 ▶); Clitherow et al. (1996 ▶); Nicolaides et al. (1998 ▶); Saunders et al. (1990 ▶); Showell et al. (1991 ▶); Swain et al. (1991 ▶); Tully et al. (1991 ▶); Watjen et al. (1989 ▶). For a related structure, see: Fun et al. (2011 ▶).

Experimental

Crystal data

C19H18ClN3O3 M = 371.81 Orthorhombic, a = 7.7501 (1) Å b = 11.0052 (2) Å c = 20.9834 (3) Å V = 1789.70 (5) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 297 K 0.41 × 0.35 × 0.21 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.908, T max = 0.951 15995 measured reflections 4556 independent reflections 3620 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.087 S = 1.02 4556 reflections 241 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1950 Friedel pairs Flack parameter: 0.01 (6) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001504/is2659sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001504/is2659Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18ClN3O3Dx = 1.380 Mg m3
Mr = 371.81Melting point = 405–409 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4556 reflections
a = 7.7501 (1) Åθ = 1.9–28.5°
b = 11.0052 (2) ŵ = 0.24 mm1
c = 20.9834 (3) ÅT = 297 K
V = 1789.70 (5) Å3Plate, colorless
Z = 40.41 × 0.35 × 0.21 mm
F(000) = 776
Bruker APEXII CCD area-detector diffractometer4556 independent reflections
Radiation source: sealed tube3620 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 28.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→8
Tmin = 0.908, Tmax = 0.951k = −14→14
15995 measured reflectionsl = −23→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0458P)2 + 0.0092P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4556 reflectionsΔρmax = 0.14 e Å3
241 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 1950 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.06337 (9)0.74415 (5)−0.14993 (2)0.08010 (19)
O10.90644 (16)0.42996 (9)0.11883 (5)0.0490 (3)
O20.62272 (16)0.60054 (11)0.29142 (7)0.0631 (4)
O30.71211 (14)0.79437 (9)0.30763 (6)0.0501 (3)
N11.00418 (18)0.59694 (10)0.16396 (6)0.0422 (3)
N20.89957 (19)0.41084 (11)0.18577 (6)0.0487 (3)
N30.90781 (17)0.65050 (11)0.29774 (6)0.0401 (3)
C11.0718 (2)0.70094 (14)0.03799 (7)0.0470 (4)
H1A1.10940.74460.07330.056*
C21.0945 (2)0.74801 (15)−0.02232 (8)0.0522 (4)
H2A1.14700.8233−0.02790.063*
C31.0385 (2)0.68209 (16)−0.07420 (7)0.0499 (4)
C40.9627 (2)0.56952 (14)−0.06747 (8)0.0517 (4)
H4A0.92830.5255−0.10310.062*
C50.9386 (2)0.52308 (13)−0.00694 (7)0.0469 (4)
H5A0.88590.4478−0.00170.056*
C60.9930 (2)0.58868 (12)0.04632 (7)0.0393 (3)
C70.96954 (19)0.54258 (12)0.11114 (7)0.0386 (3)
C80.9582 (2)0.51195 (12)0.20882 (7)0.0371 (3)
C90.9872 (2)0.53376 (12)0.27932 (7)0.0417 (4)
C100.7365 (2)0.67374 (13)0.29808 (7)0.0414 (3)
C110.5372 (2)0.83404 (16)0.32187 (8)0.0528 (4)
H11A0.45520.77440.30640.063*
H11B0.51410.91060.30070.063*
C120.51699 (19)0.84918 (13)0.39282 (7)0.0423 (3)
C130.5898 (2)0.94799 (14)0.42406 (9)0.0545 (4)
H13A0.64801.00700.40080.065*
C140.5766 (3)0.95920 (16)0.48927 (9)0.0621 (5)
H14A0.62701.02530.50960.074*
C150.4903 (3)0.87436 (17)0.52416 (9)0.0591 (5)
H15A0.48260.88250.56820.071*
C160.4146 (2)0.77656 (16)0.49429 (8)0.0572 (4)
H16A0.35410.71910.51790.069*
C170.4292 (2)0.76457 (13)0.42877 (8)0.0496 (4)
H17A0.37880.69810.40870.060*
C181.1805 (2)0.54871 (16)0.28978 (9)0.0562 (5)
H18A1.22200.61550.26470.084*
H18B1.23890.47560.27730.084*
H18C1.20240.56450.33400.084*
C190.9170 (3)0.42786 (14)0.31875 (8)0.0592 (5)
H19A0.79700.41620.30920.089*
H19B0.93020.44560.36330.089*
H19C0.97990.35520.30850.089*
H1N30.973 (2)0.7115 (14)0.2985 (7)0.036 (4)*
U11U22U33U12U13U23
Cl10.1106 (5)0.0857 (4)0.0440 (2)0.0012 (3)0.0132 (3)0.0075 (2)
O10.0635 (7)0.0416 (5)0.0418 (6)−0.0124 (5)−0.0050 (6)−0.0044 (4)
O20.0508 (7)0.0552 (7)0.0833 (10)−0.0086 (6)−0.0013 (7)0.0010 (6)
O30.0486 (7)0.0433 (5)0.0584 (7)0.0076 (5)0.0118 (6)0.0012 (5)
N10.0508 (8)0.0373 (6)0.0384 (7)−0.0039 (5)0.0004 (6)−0.0046 (5)
N20.0609 (9)0.0431 (7)0.0422 (7)−0.0097 (6)−0.0013 (7)−0.0010 (5)
N30.0438 (8)0.0338 (6)0.0425 (7)−0.0013 (6)0.0046 (6)−0.0040 (5)
C10.0536 (10)0.0451 (8)0.0422 (8)−0.0064 (7)−0.0001 (8)−0.0097 (6)
C20.0575 (10)0.0478 (8)0.0514 (9)−0.0079 (8)0.0081 (8)−0.0012 (7)
C30.0530 (10)0.0577 (9)0.0389 (8)0.0070 (8)0.0062 (8)−0.0006 (7)
C40.0598 (11)0.0534 (9)0.0420 (8)0.0038 (8)−0.0090 (8)−0.0110 (7)
C50.0536 (11)0.0415 (8)0.0457 (8)−0.0013 (7)−0.0070 (8)−0.0065 (6)
C60.0399 (8)0.0388 (7)0.0390 (8)0.0034 (6)0.0000 (7)−0.0060 (5)
C70.0376 (8)0.0352 (7)0.0431 (8)−0.0002 (6)−0.0026 (7)−0.0057 (6)
C80.0374 (8)0.0328 (6)0.0410 (7)0.0000 (6)0.0007 (6)−0.0021 (5)
C90.0507 (10)0.0357 (7)0.0389 (8)0.0043 (6)0.0017 (7)−0.0032 (6)
C100.0496 (9)0.0419 (7)0.0327 (7)0.0033 (7)0.0047 (7)0.0044 (6)
C110.0474 (10)0.0591 (10)0.0518 (10)0.0146 (8)0.0031 (8)0.0053 (7)
C120.0345 (8)0.0425 (7)0.0499 (9)0.0088 (6)0.0019 (7)0.0026 (6)
C130.0503 (10)0.0438 (8)0.0692 (12)−0.0025 (8)0.0048 (9)0.0023 (8)
C140.0618 (12)0.0539 (10)0.0705 (12)0.0008 (9)−0.0075 (11)−0.0185 (8)
C150.0585 (12)0.0680 (11)0.0507 (10)0.0107 (9)0.0034 (9)−0.0074 (8)
C160.0589 (11)0.0567 (10)0.0561 (10)−0.0002 (9)0.0101 (9)0.0080 (7)
C170.0506 (10)0.0423 (8)0.0560 (9)−0.0043 (8)0.0001 (8)−0.0035 (7)
C180.0540 (11)0.0618 (10)0.0528 (10)0.0117 (8)−0.0128 (9)−0.0138 (8)
C190.0924 (15)0.0401 (8)0.0452 (9)0.0039 (9)0.0064 (10)0.0028 (6)
Cl1—C31.7404 (16)C8—C91.515 (2)
O1—C71.3422 (16)C9—C181.523 (2)
O1—N21.4213 (17)C9—C191.529 (2)
O2—C101.2023 (19)C11—C121.506 (2)
O3—C101.3558 (18)C11—H11A0.9700
O3—C111.455 (2)C11—H11B0.9700
N1—C71.2877 (18)C12—C171.378 (2)
N1—C81.3740 (19)C12—C131.390 (2)
N2—C81.2955 (18)C13—C141.378 (3)
N3—C101.352 (2)C13—H13A0.9300
N3—C91.4758 (18)C14—C151.362 (3)
N3—H1N30.841 (16)C14—H14A0.9300
C1—C21.379 (2)C15—C161.377 (3)
C1—C61.389 (2)C15—H15A0.9300
C1—H1A0.9300C16—C171.386 (2)
C2—C31.378 (2)C16—H16A0.9300
C2—H2A0.9300C17—H17A0.9300
C3—C41.378 (2)C18—H18A0.9600
C4—C51.382 (2)C18—H18B0.9600
C4—H4A0.9300C18—H18C0.9600
C5—C61.3957 (19)C19—H19A0.9600
C5—H5A0.9300C19—H19B0.9600
C6—C71.463 (2)C19—H19C0.9600
C7—O1—N2105.61 (10)O2—C10—O3124.84 (16)
C10—O3—C11116.99 (13)N3—C10—O3108.82 (14)
C7—N1—C8102.66 (12)O3—C11—C12109.46 (13)
C8—N2—O1103.21 (11)O3—C11—H11A109.8
C10—N3—C9125.11 (13)C12—C11—H11A109.8
C10—N3—H1N3116.2 (10)O3—C11—H11B109.8
C9—N3—H1N3116.6 (10)C12—C11—H11B109.8
C2—C1—C6120.39 (14)H11A—C11—H11B108.2
C2—C1—H1A119.8C17—C12—C13118.11 (15)
C6—C1—H1A119.8C17—C12—C11121.18 (14)
C3—C2—C1119.14 (15)C13—C12—C11120.70 (15)
C3—C2—H2A120.4C14—C13—C12120.56 (16)
C1—C2—H2A120.4C14—C13—H13A119.7
C2—C3—C4121.76 (15)C12—C13—H13A119.7
C2—C3—Cl1118.67 (13)C15—C14—C13120.61 (17)
C4—C3—Cl1119.56 (13)C15—C14—H14A119.7
C3—C4—C5118.97 (14)C13—C14—H14A119.7
C3—C4—H4A120.5C14—C15—C16120.02 (18)
C5—C4—H4A120.5C14—C15—H15A120.0
C4—C5—C6120.26 (15)C16—C15—H15A120.0
C4—C5—H5A119.9C15—C16—C17119.42 (16)
C6—C5—H5A119.9C15—C16—H16A120.3
C1—C6—C5119.47 (14)C17—C16—H16A120.3
C1—C6—C7118.68 (13)C12—C17—C16121.27 (15)
C5—C6—C7121.84 (14)C12—C17—H17A119.4
N1—C7—O1113.68 (13)C16—C17—H17A119.4
N1—C7—C6127.82 (13)C9—C18—H18A109.5
O1—C7—C6118.50 (12)C9—C18—H18B109.5
N2—C8—N1114.83 (13)H18A—C18—H18B109.5
N2—C8—C9123.53 (13)C9—C18—H18C109.5
N1—C8—C9121.50 (12)H18A—C18—H18C109.5
N3—C9—C8109.39 (12)H18B—C18—H18C109.5
N3—C9—C18106.14 (13)C9—C19—H19A109.5
C8—C9—C18107.66 (13)C9—C19—H19B109.5
N3—C9—C19111.94 (13)H19A—C19—H19B109.5
C8—C9—C19110.79 (12)C9—C19—H19C109.5
C18—C9—C19110.72 (15)H19A—C19—H19C109.5
O2—C10—N3126.34 (14)H19B—C19—H19C109.5
C7—O1—N2—C8−0.08 (16)C10—N3—C9—C18−177.07 (15)
C6—C1—C2—C3−0.2 (3)C10—N3—C9—C19−56.2 (2)
C1—C2—C3—C4−1.0 (3)N2—C8—C9—N3−131.00 (16)
C1—C2—C3—Cl1178.49 (14)N1—C8—C9—N353.48 (19)
C2—C3—C4—C51.6 (3)N2—C8—C9—C18114.08 (17)
Cl1—C3—C4—C5−177.88 (13)N1—C8—C9—C18−61.44 (18)
C3—C4—C5—C6−1.0 (3)N2—C8—C9—C19−7.1 (2)
C2—C1—C6—C50.7 (2)N1—C8—C9—C19177.35 (15)
C2—C1—C6—C7−179.32 (15)C9—N3—C10—O29.9 (3)
C4—C5—C6—C1−0.1 (2)C9—N3—C10—O3−170.43 (13)
C4—C5—C6—C7179.93 (15)C11—O3—C10—O211.3 (2)
C8—N1—C7—O1−0.38 (18)C11—O3—C10—N3−168.37 (12)
C8—N1—C7—C6−179.60 (15)C10—O3—C11—C1298.05 (16)
N2—O1—C7—N10.30 (18)O3—C11—C12—C17−104.15 (17)
N2—O1—C7—C6179.60 (13)O3—C11—C12—C1374.49 (18)
C1—C6—C7—N14.6 (2)C17—C12—C13—C141.1 (2)
C5—C6—C7—N1−175.44 (16)C11—C12—C13—C14−177.57 (16)
C1—C6—C7—O1−174.60 (14)C12—C13—C14—C15−0.7 (3)
C5—C6—C7—O15.4 (2)C13—C14—C15—C16−0.3 (3)
O1—N2—C8—N1−0.16 (18)C14—C15—C16—C170.9 (3)
O1—N2—C8—C9−175.95 (14)C13—C12—C17—C16−0.5 (2)
C7—N1—C8—N20.33 (19)C11—C12—C17—C16178.18 (15)
C7—N1—C8—C9176.22 (14)C15—C16—C17—C12−0.5 (3)
C10—N3—C9—C867.03 (18)
Cg1 is the centroid of the C12–C17 ring.
D—H···AD—HH···AD···AD—H···A
N3—H1N3···N2i0.840 (16)2.428 (15)3.2492 (18)165.7 (14)
C16—H16A···Cg1ii0.932.913.6700 (18)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C12–C17 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1N3⋯N2i0.840 (16)2.428 (15)3.2492 (18)165.7 (14)
C16—H16ACg1ii0.932.913.6700 (18)140

Symmetry codes: (i) ; (ii) .

  9 in total

1.  2-(oxadiazolyl)- and 2-(thiazolyl)imidazo[1,2-a]pyrimidines as agonists and inverse agonists at benzodiazepine receptors.

Authors:  W R Tully; C R Gardner; R J Gillespie; R Westwood
Journal:  J Med Chem       Date:  1991-07       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Novel quinuclidine-based ligands for the muscarinic cholinergic receptor.

Authors:  J Saunders; M Cassidy; S B Freedman; E A Harley; L L Iversen; C Kneen; A M MacLeod; K J Merchant; R J Snow; R Baker
Journal:  J Med Chem       Date:  1990-04       Impact factor: 7.446

4.  Tetrahydropyridyloxadiazoles: semirigid muscarinic ligands.

Authors:  G A Showell; T L Gibbons; C O Kneen; A M MacLeod; K Merchant; J Saunders; S B Freedman; S Patel; R Baker
Journal:  J Med Chem       Date:  1991-03       Impact factor: 7.446

5.  Novel benzodiazepine receptor partial agonists: oxadiazolylimidazobenzodiazepines.

Authors:  F Watjen; R Baker; M Engelstoff; R Herbert; A MacLeod; A Knight; K Merchant; J Moseley; J Saunders; C J Swain
Journal:  J Med Chem       Date:  1989-10       Impact factor: 7.446

6.  Synthesis and antitumor activity evaluation of Delta2-1,2,4-oxadiazoline derivatives.

Authors:  A Chimirri; S Grasso; A M Monforte; A Rao; M Zappala
Journal:  Farmaco       Date:  1996-02

7.  Novel 5-HT3 antagonists. Indole oxadiazoles.

Authors:  C J Swain; R Baker; C Kneen; J Moseley; J Saunders; E M Seward; G Stevenson; M Beer; J Stanton; K Watling
Journal:  J Med Chem       Date:  1991-01       Impact factor: 7.446

8.  Methyl 2-[2-(benzyl-oxycarbonyl-amino)-propan-2-yl]-5-hy-droxy-6-meth-oxy-pyrimidine-4-carboxyl-ate.

Authors:  Hoong-Kun Fun; V Sumangala; D Jagadeesh Prasad; Boja Poojary; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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